LOCUS NM_119060 1225 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana SNF7 family protein (SNF7.1), mRNA.
ACCESSION NM_119060
VERSION NM_119060.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1225)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 1225)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1225)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1225)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003075).
On Sep 12, 2016 this sequence version replaced NM_119060.4.
FEATURES Location/Qualifiers
source 1..1225
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
gene 1..1225
/gene="SNF7.1"
/locus_tag="AT4G29160"
/gene_synonym="F19B15.190; F19B15_190; VPS32"
/db_xref="Araport:AT4G29160"
/db_xref="GeneID:829037"
/db_xref="TAIR:AT4G29160"
CDS 271..930
/gene="SNF7.1"
/locus_tag="AT4G29160"
/gene_synonym="F19B15.190; F19B15_190; VPS32"
/inference="Similar to RNA sequence,
EST:INSD:EG515125.1,INSD:EL322890.1,INSD:EL191865.1,
INSD:EL043117.1,INSD:CB261337.1,INSD:AV783876.1,
INSD:EL199251.1,INSD:EL143363.1,INSD:EL276347.1,
INSD:BP837149.1,INSD:EL027398.1,INSD:BP827688.1,
INSD:AV822992.1,INSD:EL294018.1,INSD:EH976913.1,
INSD:EL106637.1,INSD:Z18419.1,INSD:DR212644.1,
INSD:ES197628.1,INSD:ES156946.1,INSD:EL114218.1,
INSD:CB256765.1,INSD:EL096187.1,INSD:DR370717.1,
INSD:EH837652.1,INSD:AA597551.1,INSD:ES211300.1,
INSD:BP840676.1,INSD:ES182824.1,INSD:BP628152.1,
INSD:EG472185.1,INSD:ES143037.1,INSD:EG524517.1,
INSD:DR212647.1,INSD:ES111890.1,INSD:EL096976.1,
INSD:EL215194.1,INSD:EH991670.1,INSD:EG515123.1,
INSD:EL095665.1,INSD:AV530718.1,INSD:EL339604.1,
INSD:DR212645.1,INSD:AV798257.1,INSD:AV533653.1,
INSD:EL318537.1,INSD:EG515124.1,INSD:EH889702.1,
INSD:EG515129.1,INSD:AV531483.1,INSD:DR212648.1,
INSD:EL082396.1,INSD:BP574450.1,INSD:EL116425.1,
INSD:EH889231.1,INSD:ES027094.1,INSD:EL220408.1,
INSD:EH843151.1,INSD:EG515128.1,INSD:BP821463.1,
INSD:EL285889.1,INSD:EL265767.1,INSD:EL204597.1,
INSD:EL039932.1,INSD:EH877460.1,INSD:EL090719.1,
INSD:EL168212.1,INSD:ES062335.1,INSD:AA651251.1,
INSD:ES106455.1,INSD:AI100012.1,INSD:EL096288.1,
INSD:EL324590.1,INSD:DR212646.1,INSD:EG515122.1,
INSD:DR371214.1,INSD:EH986203.1,INSD:EL249297.1,
INSD:ES142985.1,INSD:DR212649.1,INSD:EG472169.1,
INSD:EL188775.1,INSD:EL272329.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY072490.1,INSD:AY088519.1,INSD:AY042853.1"
/note="SNF7.1; CONTAINS InterPro DOMAIN/s: Snf7
(InterPro:IPR005024); BEST Arabidopsis thaliana protein
match is: SNF7 family protein (TAIR:AT2G19830.1); Has 1847
Blast hits to 1847 proteins in 245 species: Archae - 2;
Bacteria - 29; Metazoa - 703; Fungi - 444; Plants - 428;
Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink)."
/codon_start=1
/product="SNF7 family protein"
/protein_id="NP_194645.1"
/db_xref="GeneID:829037"
/db_xref="TAIR:AT4G29160"
/db_xref="Araport:AT4G29160"
/translation="MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEV
EKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDA
LRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAA
ELDELESEELESQLLQPATTAPPLPSVPVPAGRQPARPVPQKRTAEEEELAALQAEMA
L"
ORIGIN
1 ctattttgta aacaaccact taaacataaa cacgtgttaa cgcgattcac atcaacgcgt
61 gtggaaaaag gaaagttgct tccttcgttc ttaatccctt ctctgtgaac acaaaaacgc
121 gaaataacaa acaaaaacca atacaagtga tttccattat ttctcgtcta cgtatacaat
181 tgatcttccc ccatctccaa ttcagatttg gacagagtaa cctgtgatcg tgtcggttgg
241 ggtagaagag atcgaagtgg gagcaaaatc atgatgaatc ggctattcgg gaaacccaag
301 caggaggcta atgctctcca aactttagac aagcttaacg agacgcttga gatgctagag
361 aaaaaggaga aagtactctt gaagaaagct ggtgcagagg ttgagaaggc aaaagaatac
421 tcccgggcta agaacaaacg agcggctata cagtgtttga aaaggaagag gttatatgag
481 ggacaagtcg aacagcttgg gaatttccag ctccgtattc atgatcaaat gattatgtta
541 gaaggtgcaa aagcaacaac cgaaactgtt gatgcattga ggagtggagc ttctgcaatg
601 aaggcaatgc agaaagcaac aaatattgat gatgtggata agaccatgga cgagatcaat
661 gagcaaaccg agaacatgaa acagatccaa gaagcattgg cgactccaat gggggcagcg
721 gctgacttcg acgaggatga gcttgcagca gagcttgatg aactagaaag tgaagagctt
781 gaatcgcaac ttctacagcc ggcaacaaca gctcctccat tgccttcagt tccagtgcct
841 gcagggcgtc aaccggctcg tcctgttccc cagaagcgga ctgctgagga agaagaactc
901 gctgcattac aggctgagat ggccctctaa ggttattcac ctctccgagc agagacatgt
961 atgcattgat agacacgaac agacgatgta tataaggatc tgaatcagat taattcggag
1021 cgaaaaactt ttataatccc cgtcgttaat gttatctgca atttgagtgt tcttcacata
1081 atttatcttt tgtaattttt gtatcttttt atgacacttt ttcctttggt taataatcac
1141 tttactccta tgttcatcac tttcgcctga taagactact catgaatagt caaccatata
1201 cgttgacttc gctgctttaa caaac
//