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Arabidopsis thaliana SNF7 family protein (SNF7.1), mRNA

NCBI Reference Sequence: NM_119060.5

FASTA Graphics 

LOCUS       NM_119060               1225 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana SNF7 family protein (SNF7.1), mRNA.
ACCESSION   NM_119060
VERSION     NM_119060.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1225)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 1225)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1225)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1225)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
            
            On Sep 12, 2016 this sequence version replaced NM_119060.4.
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..1225
                     /gene="SNF7.1"
                     /locus_tag="AT4G29160"
                     /gene_synonym="F19B15.190; F19B15_190; VPS32"
                     /db_xref="Araport:AT4G29160"
                     /db_xref="GeneID:829037"
                     /db_xref="TAIR:AT4G29160"
     CDS             271..930
                     /gene="SNF7.1"
                     /locus_tag="AT4G29160"
                     /gene_synonym="F19B15.190; F19B15_190; VPS32"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG515125.1,INSD:EL322890.1,INSD:EL191865.1,
                     INSD:EL043117.1,INSD:CB261337.1,INSD:AV783876.1,
                     INSD:EL199251.1,INSD:EL143363.1,INSD:EL276347.1,
                     INSD:BP837149.1,INSD:EL027398.1,INSD:BP827688.1,
                     INSD:AV822992.1,INSD:EL294018.1,INSD:EH976913.1,
                     INSD:EL106637.1,INSD:Z18419.1,INSD:DR212644.1,
                     INSD:ES197628.1,INSD:ES156946.1,INSD:EL114218.1,
                     INSD:CB256765.1,INSD:EL096187.1,INSD:DR370717.1,
                     INSD:EH837652.1,INSD:AA597551.1,INSD:ES211300.1,
                     INSD:BP840676.1,INSD:ES182824.1,INSD:BP628152.1,
                     INSD:EG472185.1,INSD:ES143037.1,INSD:EG524517.1,
                     INSD:DR212647.1,INSD:ES111890.1,INSD:EL096976.1,
                     INSD:EL215194.1,INSD:EH991670.1,INSD:EG515123.1,
                     INSD:EL095665.1,INSD:AV530718.1,INSD:EL339604.1,
                     INSD:DR212645.1,INSD:AV798257.1,INSD:AV533653.1,
                     INSD:EL318537.1,INSD:EG515124.1,INSD:EH889702.1,
                     INSD:EG515129.1,INSD:AV531483.1,INSD:DR212648.1,
                     INSD:EL082396.1,INSD:BP574450.1,INSD:EL116425.1,
                     INSD:EH889231.1,INSD:ES027094.1,INSD:EL220408.1,
                     INSD:EH843151.1,INSD:EG515128.1,INSD:BP821463.1,
                     INSD:EL285889.1,INSD:EL265767.1,INSD:EL204597.1,
                     INSD:EL039932.1,INSD:EH877460.1,INSD:EL090719.1,
                     INSD:EL168212.1,INSD:ES062335.1,INSD:AA651251.1,
                     INSD:ES106455.1,INSD:AI100012.1,INSD:EL096288.1,
                     INSD:EL324590.1,INSD:DR212646.1,INSD:EG515122.1,
                     INSD:DR371214.1,INSD:EH986203.1,INSD:EL249297.1,
                     INSD:ES142985.1,INSD:DR212649.1,INSD:EG472169.1,
                     INSD:EL188775.1,INSD:EL272329.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AY072490.1,INSD:AY088519.1,INSD:AY042853.1"
                     /note="SNF7.1; CONTAINS InterPro DOMAIN/s: Snf7
                     (InterPro:IPR005024); BEST Arabidopsis thaliana protein
                     match is: SNF7 family protein (TAIR:AT2G19830.1); Has 1847
                     Blast hits to 1847 proteins in 245 species: Archae - 2;
                     Bacteria - 29; Metazoa - 703; Fungi - 444; Plants - 428;
                     Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink)."
                     /codon_start=1
                     /product="SNF7 family protein"
                     /protein_id="NP_194645.1"
                     /db_xref="GeneID:829037"
                     /db_xref="TAIR:AT4G29160"
                     /db_xref="Araport:AT4G29160"
                     /translation="MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEV
                     EKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDA
                     LRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAA
                     ELDELESEELESQLLQPATTAPPLPSVPVPAGRQPARPVPQKRTAEEEELAALQAEMA
                     L"
ORIGIN      
        1 ctattttgta aacaaccact taaacataaa cacgtgttaa cgcgattcac atcaacgcgt
       61 gtggaaaaag gaaagttgct tccttcgttc ttaatccctt ctctgtgaac acaaaaacgc
      121 gaaataacaa acaaaaacca atacaagtga tttccattat ttctcgtcta cgtatacaat
      181 tgatcttccc ccatctccaa ttcagatttg gacagagtaa cctgtgatcg tgtcggttgg
      241 ggtagaagag atcgaagtgg gagcaaaatc atgatgaatc ggctattcgg gaaacccaag
      301 caggaggcta atgctctcca aactttagac aagcttaacg agacgcttga gatgctagag
      361 aaaaaggaga aagtactctt gaagaaagct ggtgcagagg ttgagaaggc aaaagaatac
      421 tcccgggcta agaacaaacg agcggctata cagtgtttga aaaggaagag gttatatgag
      481 ggacaagtcg aacagcttgg gaatttccag ctccgtattc atgatcaaat gattatgtta
      541 gaaggtgcaa aagcaacaac cgaaactgtt gatgcattga ggagtggagc ttctgcaatg
      601 aaggcaatgc agaaagcaac aaatattgat gatgtggata agaccatgga cgagatcaat
      661 gagcaaaccg agaacatgaa acagatccaa gaagcattgg cgactccaat gggggcagcg
      721 gctgacttcg acgaggatga gcttgcagca gagcttgatg aactagaaag tgaagagctt
      781 gaatcgcaac ttctacagcc ggcaacaaca gctcctccat tgccttcagt tccagtgcct
      841 gcagggcgtc aaccggctcg tcctgttccc cagaagcgga ctgctgagga agaagaactc
      901 gctgcattac aggctgagat ggccctctaa ggttattcac ctctccgagc agagacatgt
      961 atgcattgat agacacgaac agacgatgta tataaggatc tgaatcagat taattcggag
     1021 cgaaaaactt ttataatccc cgtcgttaat gttatctgca atttgagtgt tcttcacata
     1081 atttatcttt tgtaattttt gtatcttttt atgacacttt ttcctttggt taataatcac
     1141 tttactccta tgttcatcac tttcgcctga taagactact catgaatagt caaccatata
     1201 cgttgacttc gctgctttaa caaac
//
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Reference sequence information

More about the SNF7.1 gene

  • SNF7.1 gene
    Also Known As: AT4G29160, F19B15.190, ...

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