LOCUS NM_117197 1601 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana phosphatase-like protein (SGT1B), mRNA.
ACCESSION NM_117197
VERSION NM_117197.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1601)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 1601)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1601)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1601)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003075).
On Sep 12, 2016 this sequence version replaced NM_117197.3.
FEATURES Location/Qualifiers
source 1..1601
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
gene 1..1601
/gene="SGT1B"
/locus_tag="AT4G11260"
/gene_synonym="ATSGT1B; EDM1; ENHANCED DOWNY MILDEW 1;
ENHANCER OF TIR1-1 AUXIN RESISTANCE 3; ETA3; F8L21.50;
F8L21_50; RPR1"
/note="Functions in plant disease resistance signaling,
SCF(TIR1) mediated degradation of Aux/IAA proteins and
HSP90 mediated degradation of R resistance proteins.
AtSGT1a and AtSGT1b are functionally redundant in the
resistance to pathogenes. AtSGT1b was more highly
expressed than AtSGT1. The N-terminal TPR domain of
AtSGT1a reduces the steady-state level of Arabidopsis SGT1
proteins whereas the same domain from AtSGT1b enhances
SGT1 accumulation. The TPR domain is dispensable for SGT1
resistance."
/db_xref="Araport:AT4G11260"
/db_xref="GeneID:826728"
/db_xref="TAIR:AT4G11260"
CDS 194..1270
/gene="SGT1B"
/locus_tag="AT4G11260"
/gene_synonym="ATSGT1B; EDM1; ENHANCED DOWNY MILDEW 1;
ENHANCER OF TIR1-1 AUXIN RESISTANCE 3; ETA3; F8L21.50;
F8L21_50; RPR1"
/inference="Similar to RNA sequence,
EST:INSD:EH890468.1,INSD:BP619935.1,INSD:BP580108.1,
INSD:BP619007.1,INSD:BP627138.1,INSD:ES097366.1,
INSD:ES015553.1,INSD:AA712212.1,INSD:T88397.1,
INSD:BP849072.1,INSD:BP798133.1,INSD:BP587275.1,
INSD:EL341646.1,INSD:AV540500.1,INSD:BP660217.1,
INSD:ES023039.1,INSD:EL242820.1,INSD:EH850980.1,
INSD:DR299100.1,INSD:ES116000.1,INSD:AV541980.1,
INSD:BP560523.2,INSD:DR299097.1,INSD:AV542676.1,
INSD:EL200413.1,INSD:ES084949.1,INSD:EH946350.1,
INSD:DR299103.1,INSD:DR299105.1,INSD:DR299101.1,
INSD:BP614893.1,INSD:AV519774.1,INSD:EG461939.1,
INSD:DR381066.1,INSD:AV821649.1,INSD:ES118883.1,
INSD:EL294743.1,INSD:AV521698.1,INSD:EH871448.1,
INSD:EH944464.1,INSD:EL268760.1,INSD:BP798609.1,
INSD:AV562747.1,INSD:AV807443.1,INSD:DR376645.1,
INSD:DR299104.1,INSD:BP784669.1,INSD:CD530558.1,
INSD:AI995077.1,INSD:CB257902.1,INSD:CK121188.1,
INSD:BP795893.1,INSD:EL218281.1,INSD:ES169433.1,
INSD:EL187794.1,INSD:ES043113.1,INSD:EG519854.1,
INSD:DR299094.1,INSD:EG461940.1,INSD:BE520611.1,
INSD:AV781723.1,INSD:BU635977.1,INSD:DR299098.1,
INSD:BP783871.1,INSD:BE520612.1,INSD:BP586388.1,
INSD:DR293111.1,INSD:EL130586.1,INSD:BP855296.1,
INSD:EL267480.1,INSD:BP822119.1,INSD:DR299106.1,
INSD:EG519850.1,INSD:EG519853.1,INSD:EL205748.1,
INSD:EH895122.1,INSD:N37605.1,INSD:BP581404.1,
INSD:BU635011.1,INSD:H37607.1,INSD:DR299107.1,
INSD:CB074486.1,INSD:EG519851.1,INSD:AV829697.1,
INSD:ES052457.1,INSD:EL304443.1,INSD:DR299093.1,
INSD:DR299099.1,INSD:EH923952.1,INSD:AV782167.1,
INSD:EH801134.1,INSD:EH889175.1,INSD:DR299095.1,
INSD:EL130948.1,INSD:EL989054.1,INSD:EH874207.1,
INSD:DR299096.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY150487.1,INSD:AF428340.1,INSD:AY085464.1,
INSD:BX827155.1,INSD:AF439976.1,INSD:AJ318019.1,
INSD:AF370229.1"
/note="SGT1B; FUNCTIONS IN: protein binding; INVOLVED IN:
in 6 processes; LOCATED IN: SCF ubiquitin ligase complex;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain
(InterPro:IPR007052), Tetratricopeptide-like helical
(InterPro:IPR011990), SGS (InterPro:IPR007699),
Tetratricopeptide repeat-containing (InterPro:IPR013026),
HSP20-like chaperone (InterPro:IPR008978),
Tetratricopeptide repeat (InterPro:IPR019734), CS domain
(InterPro:IPR017447); BEST Arabidopsis thaliana protein
match is: phosphatase-related (TAIR:AT4G23570.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
/codon_start=1
/product="phosphatase-like protein"
/protein_id="NP_192865.1"
/db_xref="GeneID:826728"
/db_xref="TAIR:AT4G11260"
/db_xref="Araport:AT4G11260"
/translation="MAKELAEKAKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQ
ANIKIDNFTEAVVDANKAIELEPTLAKAYLRKGTACMKLEEYSTAKAALEKGASVAPN
EPKFKKMIDECDLRIAEEEKDLVQPMPPSLPSSSTTPLATEADAPPVPIPAAPAKPMF
RHEFYQKPEEAVVTIFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIP
EKCRFEVLSTKVEIRLAKAEIITWASLEYGKGQSVLPKPNVSSALSQRPVYPSSKPAK
DWDKLEAEVKKQEKDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTN
WKEVGTKKVESTPPDGMELKKWEY"
ORIGIN
1 ataaaatcta attacctttt tgtttttggt tatatgacct agtagaggta ttaaaacgtt
61 cttaaaagaa aaaaaaaatc ccaaacacag caaaaaaaaa aaaagcctag aggaatagaa
121 tcggtctctt tctctataat ctctctctct ctctgacttg tttgtgttct ctcaaatcct
181 ctgataagaa tcaatggcca aggaattagc agagaaagct aaagaagctt ttctagatga
241 tgacttcgat gttgctgttg acttatactc caaagccatt gacttggatc ccaattgcgc
301 cgccttcttc gccgatcgtg ctcaggccaa catcaaaatc gataacttca ctgaagctgt
361 tgtagatgcg aacaaagcca ttgagttgga gccaacgttg gcaaaagcct atctcagaaa
421 gggcactgct tgtatgaagc tagaagaata tagtactgct aaagcagccc tggaaaaggg
481 agcttctgtt gcaccgaatg aaccaaagtt taagaagatg atagatgaat gcgatcttcg
541 tattgcagaa gaagagaaag atttggttca gccgatgcca ccgagtttgc cttcaagctc
601 tacaacacca ctagcaacgg aagctgatgc tcctcctgtt ccaattcctg cagcacctgc
661 caaaccgatg ttcaggcacg agttctacca gaaaccagaa gaagcggtgg tgacaatttt
721 cgccaaaaaa gtacctaagg agaacgtaac tgtcgagttt ggtgagcaga ttctgagtgt
781 tgtcattgat gttgctggag aggaagctta tcatctccag ccgagattgt tcgggaagat
841 aataccagag aagtgcagat ttgaagtatt gtcgaccaaa gttgagatcc gtcttgcgaa
901 agcagagata atcacctggg cctcccttga atatggtaaa gggcaaagtg ttttgcccaa
961 acccaatgtc tcatcagcgc tgtcgcagag accagtgtac ccatcttcta agccagcaaa
1021 agactgggac aagttggaag ctgaagtgaa gaaacaggag aaggatgaga agcttgatgg
1081 agatgcagct atgaacaaat ttttcagcga catatactcg agtgcagatg aagacatgag
1141 gcgggcaatg aacaaatcat ttgcagagtc gaatgggacg gtactgtcga caaactggaa
1201 agaagttggg actaagaaag tggagagcac tccaccagat ggcatggagc tcaagaagtg
1261 ggagtattga tcttcttaaa atcccctttt ctggtttttg ttaaaaaaaa gtctgacaaa
1321 tcttttgaac ttttaaggtg tttttctttt ttggtttctg ctcgaatttg tctctctcca
1381 ttcttgcgtt gtggtctcaa agaacgttct gatactttga ttttgtatta gaaaactaaa
1441 actcgcaagt ctgttgtttt ggaactttgt tcttttatcg agaggcttat ctaaatattt
1501 cttgacataa ttgcattgtg gtctaaaagg ttagttgtat aagcccaact ttctttagtt
1561 aaaaccgatg tgcatctata tagtgagaca gtattttcac c
//