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Arabidopsis thaliana phosphatase-like protein (SGT1B), mRNA

NCBI Reference Sequence: NM_117197.4

FASTA Graphics 

LOCUS       NM_117197               1601 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana phosphatase-like protein (SGT1B), mRNA.
ACCESSION   NM_117197
VERSION     NM_117197.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 1601)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1601)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1601)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
            
            On Sep 12, 2016 this sequence version replaced NM_117197.3.
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..1601
                     /gene="SGT1B"
                     /locus_tag="AT4G11260"
                     /gene_synonym="ATSGT1B; EDM1; ENHANCED DOWNY MILDEW 1;
                     ENHANCER OF TIR1-1 AUXIN RESISTANCE 3; ETA3; F8L21.50;
                     F8L21_50; RPR1"
                     /note="Functions in plant disease resistance signaling,
                     SCF(TIR1) mediated degradation of Aux/IAA proteins and
                     HSP90 mediated degradation of R resistance proteins.
                     AtSGT1a and AtSGT1b are functionally redundant in the
                     resistance to pathogenes. AtSGT1b was more highly
                     expressed than AtSGT1. The N-terminal TPR domain of
                     AtSGT1a reduces the steady-state level of Arabidopsis SGT1
                     proteins whereas the same domain from AtSGT1b enhances
                     SGT1 accumulation. The TPR domain is dispensable for SGT1
                     resistance."
                     /db_xref="Araport:AT4G11260"
                     /db_xref="GeneID:826728"
                     /db_xref="TAIR:AT4G11260"
     CDS             194..1270
                     /gene="SGT1B"
                     /locus_tag="AT4G11260"
                     /gene_synonym="ATSGT1B; EDM1; ENHANCED DOWNY MILDEW 1;
                     ENHANCER OF TIR1-1 AUXIN RESISTANCE 3; ETA3; F8L21.50;
                     F8L21_50; RPR1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH890468.1,INSD:BP619935.1,INSD:BP580108.1,
                     INSD:BP619007.1,INSD:BP627138.1,INSD:ES097366.1,
                     INSD:ES015553.1,INSD:AA712212.1,INSD:T88397.1,
                     INSD:BP849072.1,INSD:BP798133.1,INSD:BP587275.1,
                     INSD:EL341646.1,INSD:AV540500.1,INSD:BP660217.1,
                     INSD:ES023039.1,INSD:EL242820.1,INSD:EH850980.1,
                     INSD:DR299100.1,INSD:ES116000.1,INSD:AV541980.1,
                     INSD:BP560523.2,INSD:DR299097.1,INSD:AV542676.1,
                     INSD:EL200413.1,INSD:ES084949.1,INSD:EH946350.1,
                     INSD:DR299103.1,INSD:DR299105.1,INSD:DR299101.1,
                     INSD:BP614893.1,INSD:AV519774.1,INSD:EG461939.1,
                     INSD:DR381066.1,INSD:AV821649.1,INSD:ES118883.1,
                     INSD:EL294743.1,INSD:AV521698.1,INSD:EH871448.1,
                     INSD:EH944464.1,INSD:EL268760.1,INSD:BP798609.1,
                     INSD:AV562747.1,INSD:AV807443.1,INSD:DR376645.1,
                     INSD:DR299104.1,INSD:BP784669.1,INSD:CD530558.1,
                     INSD:AI995077.1,INSD:CB257902.1,INSD:CK121188.1,
                     INSD:BP795893.1,INSD:EL218281.1,INSD:ES169433.1,
                     INSD:EL187794.1,INSD:ES043113.1,INSD:EG519854.1,
                     INSD:DR299094.1,INSD:EG461940.1,INSD:BE520611.1,
                     INSD:AV781723.1,INSD:BU635977.1,INSD:DR299098.1,
                     INSD:BP783871.1,INSD:BE520612.1,INSD:BP586388.1,
                     INSD:DR293111.1,INSD:EL130586.1,INSD:BP855296.1,
                     INSD:EL267480.1,INSD:BP822119.1,INSD:DR299106.1,
                     INSD:EG519850.1,INSD:EG519853.1,INSD:EL205748.1,
                     INSD:EH895122.1,INSD:N37605.1,INSD:BP581404.1,
                     INSD:BU635011.1,INSD:H37607.1,INSD:DR299107.1,
                     INSD:CB074486.1,INSD:EG519851.1,INSD:AV829697.1,
                     INSD:ES052457.1,INSD:EL304443.1,INSD:DR299093.1,
                     INSD:DR299099.1,INSD:EH923952.1,INSD:AV782167.1,
                     INSD:EH801134.1,INSD:EH889175.1,INSD:DR299095.1,
                     INSD:EL130948.1,INSD:EL989054.1,INSD:EH874207.1,
                     INSD:DR299096.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AY150487.1,INSD:AF428340.1,INSD:AY085464.1,
                     INSD:BX827155.1,INSD:AF439976.1,INSD:AJ318019.1,
                     INSD:AF370229.1"
                     /note="SGT1B; FUNCTIONS IN: protein binding; INVOLVED IN:
                     in 6 processes; LOCATED IN: SCF ubiquitin ligase complex;
                     EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
                     growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain
                     (InterPro:IPR007052), Tetratricopeptide-like helical
                     (InterPro:IPR011990), SGS (InterPro:IPR007699),
                     Tetratricopeptide repeat-containing (InterPro:IPR013026),
                     HSP20-like chaperone (InterPro:IPR008978),
                     Tetratricopeptide repeat (InterPro:IPR019734), CS domain
                     (InterPro:IPR017447); BEST Arabidopsis thaliana protein
                     match is: phosphatase-related (TAIR:AT4G23570.2); Has 1807
                     Blast hits to 1807 proteins in 277 species: Archae - 0;
                     Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
                     Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="phosphatase-like protein"
                     /protein_id="NP_192865.1"
                     /db_xref="GeneID:826728"
                     /db_xref="TAIR:AT4G11260"
                     /db_xref="Araport:AT4G11260"
                     /translation="MAKELAEKAKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQ
                     ANIKIDNFTEAVVDANKAIELEPTLAKAYLRKGTACMKLEEYSTAKAALEKGASVAPN
                     EPKFKKMIDECDLRIAEEEKDLVQPMPPSLPSSSTTPLATEADAPPVPIPAAPAKPMF
                     RHEFYQKPEEAVVTIFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIP
                     EKCRFEVLSTKVEIRLAKAEIITWASLEYGKGQSVLPKPNVSSALSQRPVYPSSKPAK
                     DWDKLEAEVKKQEKDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTN
                     WKEVGTKKVESTPPDGMELKKWEY"
ORIGIN      
        1 ataaaatcta attacctttt tgtttttggt tatatgacct agtagaggta ttaaaacgtt
       61 cttaaaagaa aaaaaaaatc ccaaacacag caaaaaaaaa aaaagcctag aggaatagaa
      121 tcggtctctt tctctataat ctctctctct ctctgacttg tttgtgttct ctcaaatcct
      181 ctgataagaa tcaatggcca aggaattagc agagaaagct aaagaagctt ttctagatga
      241 tgacttcgat gttgctgttg acttatactc caaagccatt gacttggatc ccaattgcgc
      301 cgccttcttc gccgatcgtg ctcaggccaa catcaaaatc gataacttca ctgaagctgt
      361 tgtagatgcg aacaaagcca ttgagttgga gccaacgttg gcaaaagcct atctcagaaa
      421 gggcactgct tgtatgaagc tagaagaata tagtactgct aaagcagccc tggaaaaggg
      481 agcttctgtt gcaccgaatg aaccaaagtt taagaagatg atagatgaat gcgatcttcg
      541 tattgcagaa gaagagaaag atttggttca gccgatgcca ccgagtttgc cttcaagctc
      601 tacaacacca ctagcaacgg aagctgatgc tcctcctgtt ccaattcctg cagcacctgc
      661 caaaccgatg ttcaggcacg agttctacca gaaaccagaa gaagcggtgg tgacaatttt
      721 cgccaaaaaa gtacctaagg agaacgtaac tgtcgagttt ggtgagcaga ttctgagtgt
      781 tgtcattgat gttgctggag aggaagctta tcatctccag ccgagattgt tcgggaagat
      841 aataccagag aagtgcagat ttgaagtatt gtcgaccaaa gttgagatcc gtcttgcgaa
      901 agcagagata atcacctggg cctcccttga atatggtaaa gggcaaagtg ttttgcccaa
      961 acccaatgtc tcatcagcgc tgtcgcagag accagtgtac ccatcttcta agccagcaaa
     1021 agactgggac aagttggaag ctgaagtgaa gaaacaggag aaggatgaga agcttgatgg
     1081 agatgcagct atgaacaaat ttttcagcga catatactcg agtgcagatg aagacatgag
     1141 gcgggcaatg aacaaatcat ttgcagagtc gaatgggacg gtactgtcga caaactggaa
     1201 agaagttggg actaagaaag tggagagcac tccaccagat ggcatggagc tcaagaagtg
     1261 ggagtattga tcttcttaaa atcccctttt ctggtttttg ttaaaaaaaa gtctgacaaa
     1321 tcttttgaac ttttaaggtg tttttctttt ttggtttctg ctcgaatttg tctctctcca
     1381 ttcttgcgtt gtggtctcaa agaacgttct gatactttga ttttgtatta gaaaactaaa
     1441 actcgcaagt ctgttgtttt ggaactttgt tcttttatcg agaggcttat ctaaatattt
     1501 cttgacataa ttgcattgtg gtctaaaagg ttagttgtat aagcccaact ttctttagtt
     1561 aaaaccgatg tgcatctata tagtgagaca gtattttcac c
//
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