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Arabidopsis thaliana SLH domain protein (AT3G25680), mRNA

NCBI Reference Sequence: NM_113467.3

FASTA Graphics 

LOCUS       NM_113467               1927 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana SLH domain protein (AT3G25680), mRNA.
ACCESSION   NM_113467
VERSION     NM_113467.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1927)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1927)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1927)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Apr 24, 2008 this sequence version replaced NM_113467.2.
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1927
                     /locus_tag="AT3G25680"
                     /db_xref="Araport:AT3G25680"
                     /db_xref="GeneID:822156"
                     /db_xref="TAIR:AT3G25680"
     CDS             82..1758
                     /locus_tag="AT3G25680"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG519711.1,INSD:EH837115.1,INSD:AV832074.1,
                     INSD:EL030042.1,INSD:EG486732.1,INSD:EG523578.1,
                     INSD:EL255566.1,INSD:DR361261.1,INSD:AV819071.1,
                     INSD:DR361262.1,INSD:EG523589.1,INSD:EL195214.1,
                     INSD:EG486725.1,INSD:EG486733.1,INSD:ES181396.1,
                     INSD:EH969090.1"
                     /note="FUNCTIONS IN: molecular_function unknown; INVOLVED
                     IN: biological_process unknown; LOCATED IN: chloroplast;
                     EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
                     growth stages; CONTAINS InterPro DOMAIN/s: S-layer
                     homology domain (InterPro:IPR001119); BEST Arabidopsis
                     thaliana protein match is: unknown protein
                     (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins
                     in 355 species: Archae - 39; Bacteria - 284; Metazoa -
                     1081; Fungi - 166; Plants - 264; Viruses - 45; Other
                     Eukaryotes - 575 (source: NCBI BLink)."
                     /codon_start=1
                     /product="SLH domain protein"
                     /protein_id="NP_566775.2"
                     /db_xref="GeneID:822156"
                     /db_xref="TAIR:AT3G25680"
                     /db_xref="Araport:AT3G25680"
                     /translation="MSSFSVKKSPNSSFLFPKITPLLIRHRLTLPLLVPPHKPPRFRI
                     VASLSGTSWVSQASQDKYGGWALAEDETPSPHSITKKKWRNVVITGVGSSLAVVLATI
                     AYFSISRKGFRFSFSNLLQYQNVELDQNDNEESETLFNDENNSPSEANSESVDYVSDN
                     VDSTSTGKTHRVATPVAVDAAQQEAIAVLKKLKIYEDDIVADELCTKREYARWLVRSN
                     SLLERNPMHMIVPAVALAGSSIPAFDDINTSDPDFEYIQALAEAGITSSKLSGEDSRN
                     DLGNSNFNPESFVSRLDLVNWKAQLECGFHPEIMEEISRTKVDYIDTKNINPDMALGF
                     FLDFLMGDKSTIRNVFGRIKRFQPNRPVTKAQAAVALTSGKMVKAITAELSRLEAESL
                     SQKAETEEIRSELLEKGEIRQFWDEKIQAERSRGFEMEELYLSRVNEVEEEKTTQEKW
                     SAERLKEKAAIDCQKQLLNSLTEEIDEMSQRLISDKSVYLTEHSKLQEMLSDLQSKLE
                     SLIDKRSILEAEVEALRILRSWIEDEGKASQARAKVLEEAGRRWKWNDNA"
ORIGIN      
        1 agcttctctt ccccatcttc tctcgctgct tcttcgatca ttgaagcatc cacccagaaa
       61 aaccctaatt ctcctgacaa aatgagctct ttctcagtta aaaagtcccc aaattcttcc
      121 ttcctcttcc caaaaatcac acctttactt atacgacatc gtctcactct cccattacta
      181 gttcctcctc acaaaccacc aagattccgc atcgttgctt ctctctccgg tacttcatgg
      241 gtctctcaag cttctcaaga caaatatggt ggttgggctc ttgctgaaga tgaaactcct
      301 tctcctcatt cgataactaa aaaaaagtgg aggaatgttg taatcactgg tgttggatcg
      361 tcacttgctg ttgtattagc tactattgct tacttctcaa tctccagaaa aggttttagg
      421 tttagcttta gtaatctatt gcaatatcaa aatgtggaat tggatcagaa tgataatgaa
      481 gagagtgaaa ctctgttcaa tgatgagaac aattctcctt ctgaggctaa ctctgaaagc
      541 gttgactatg tttcagataa tgttgactca acatcaaccg gaaaaactca ccgtgtcgct
      601 actccggttg ctgtggatgc tgctcaacag gaagcaatag cagttttaaa gaaactaaag
      661 atatatgaag atgatatagt ggcagacgag ttgtgtacta aacgagagta tgctagatgg
      721 ctagttcgtt ctaattcgtt attagagaga aatccaatgc acatgattgt gccagcagta
      781 gctttagctg gctcttctat tcctgcattt gacgatataa atacctcaga ccctgacttc
      841 gagtacattc aagccttggc agaggcaggc attacttcca gcaagctcag cggagaagat
      901 tctcgaaatg acttgggaaa cagtaatttt aatcctgaaa gttttgtctc ccgactcgat
      961 ttggttaact ggaaagctca gttggagtgt ggtttccatc cagaaattat ggaagagata
     1021 tcaaggacaa aggtcgacta tatagacacg aagaatatca atcccgatat ggctctcgga
     1081 ttcttcttgg acttcttgat gggtgacaag agtacgatca gaaacgtttt tggtaggatc
     1141 aagcggtttc agccaaatag acctgttacg aaagcacaag cagctgtagc attaacaagc
     1201 ggtaaaatgg tgaaagctat cacagcagag ctatcaaggt tagaagcaga gtccctctcg
     1261 cagaaagctg agacagaaga aatcagatcg gaattgctag aaaaaggcga gataaggcaa
     1321 ttttgggatg agaagattca ggcagagaga tcccgaggat ttgagatgga agagctgtat
     1381 ctctctagag ttaatgaagt agaagaagaa aaaaccactc aggagaagtg gtctgcggag
     1441 cgtttgaaag agaaagcagc catagactgt cagaaacagt tgcttaatag cttgactgag
     1501 gagattgatg agatgtctca gaggctaata tctgataaat ctgtttatct gactgaacac
     1561 agcaagttac aagagatgct aagtgactta caatcaaaac ttgaatcgct tatcgacaaa
     1621 agatctatcc tcgaagctga agtcgaagct cttcggatac taagatcttg gatagaggat
     1681 gaaggtaagg caagccaagc cagagctaag gttctcgaag aagcgggacg aagatggaaa
     1741 tggaacgata atgcttgaat ctttcttcag attgtacaaa aatttgttga gtgatcattg
     1801 tttgttatat taagcaaatc cacaaatttg gttttgttgg ttttttattt ggggaaagac
     1861 aattgactat taacccttaa tccaatcttg gtttcaaatt aaagagagaa taaatgttga
     1921 agaacct
//
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