LOCUS NM_113467 1927 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana SLH domain protein (AT3G25680), mRNA.
ACCESSION NM_113467
VERSION NM_113467.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1927)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1927)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1927)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1927)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Apr 24, 2008 this sequence version replaced NM_113467.2.
FEATURES Location/Qualifiers
source 1..1927
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..1927
/locus_tag="AT3G25680"
/db_xref="Araport:AT3G25680"
/db_xref="GeneID:822156"
/db_xref="TAIR:AT3G25680"
CDS 82..1758
/locus_tag="AT3G25680"
/inference="Similar to RNA sequence,
EST:INSD:EG519711.1,INSD:EH837115.1,INSD:AV832074.1,
INSD:EL030042.1,INSD:EG486732.1,INSD:EG523578.1,
INSD:EL255566.1,INSD:DR361261.1,INSD:AV819071.1,
INSD:DR361262.1,INSD:EG523589.1,INSD:EL195214.1,
INSD:EG486725.1,INSD:EG486733.1,INSD:ES181396.1,
INSD:EH969090.1"
/note="FUNCTIONS IN: molecular_function unknown; INVOLVED
IN: biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: S-layer
homology domain (InterPro:IPR001119); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins
in 355 species: Archae - 39; Bacteria - 284; Metazoa -
1081; Fungi - 166; Plants - 264; Viruses - 45; Other
Eukaryotes - 575 (source: NCBI BLink)."
/codon_start=1
/product="SLH domain protein"
/protein_id="NP_566775.2"
/db_xref="GeneID:822156"
/db_xref="TAIR:AT3G25680"
/db_xref="Araport:AT3G25680"
/translation="MSSFSVKKSPNSSFLFPKITPLLIRHRLTLPLLVPPHKPPRFRI
VASLSGTSWVSQASQDKYGGWALAEDETPSPHSITKKKWRNVVITGVGSSLAVVLATI
AYFSISRKGFRFSFSNLLQYQNVELDQNDNEESETLFNDENNSPSEANSESVDYVSDN
VDSTSTGKTHRVATPVAVDAAQQEAIAVLKKLKIYEDDIVADELCTKREYARWLVRSN
SLLERNPMHMIVPAVALAGSSIPAFDDINTSDPDFEYIQALAEAGITSSKLSGEDSRN
DLGNSNFNPESFVSRLDLVNWKAQLECGFHPEIMEEISRTKVDYIDTKNINPDMALGF
FLDFLMGDKSTIRNVFGRIKRFQPNRPVTKAQAAVALTSGKMVKAITAELSRLEAESL
SQKAETEEIRSELLEKGEIRQFWDEKIQAERSRGFEMEELYLSRVNEVEEEKTTQEKW
SAERLKEKAAIDCQKQLLNSLTEEIDEMSQRLISDKSVYLTEHSKLQEMLSDLQSKLE
SLIDKRSILEAEVEALRILRSWIEDEGKASQARAKVLEEAGRRWKWNDNA"
ORIGIN
1 agcttctctt ccccatcttc tctcgctgct tcttcgatca ttgaagcatc cacccagaaa
61 aaccctaatt ctcctgacaa aatgagctct ttctcagtta aaaagtcccc aaattcttcc
121 ttcctcttcc caaaaatcac acctttactt atacgacatc gtctcactct cccattacta
181 gttcctcctc acaaaccacc aagattccgc atcgttgctt ctctctccgg tacttcatgg
241 gtctctcaag cttctcaaga caaatatggt ggttgggctc ttgctgaaga tgaaactcct
301 tctcctcatt cgataactaa aaaaaagtgg aggaatgttg taatcactgg tgttggatcg
361 tcacttgctg ttgtattagc tactattgct tacttctcaa tctccagaaa aggttttagg
421 tttagcttta gtaatctatt gcaatatcaa aatgtggaat tggatcagaa tgataatgaa
481 gagagtgaaa ctctgttcaa tgatgagaac aattctcctt ctgaggctaa ctctgaaagc
541 gttgactatg tttcagataa tgttgactca acatcaaccg gaaaaactca ccgtgtcgct
601 actccggttg ctgtggatgc tgctcaacag gaagcaatag cagttttaaa gaaactaaag
661 atatatgaag atgatatagt ggcagacgag ttgtgtacta aacgagagta tgctagatgg
721 ctagttcgtt ctaattcgtt attagagaga aatccaatgc acatgattgt gccagcagta
781 gctttagctg gctcttctat tcctgcattt gacgatataa atacctcaga ccctgacttc
841 gagtacattc aagccttggc agaggcaggc attacttcca gcaagctcag cggagaagat
901 tctcgaaatg acttgggaaa cagtaatttt aatcctgaaa gttttgtctc ccgactcgat
961 ttggttaact ggaaagctca gttggagtgt ggtttccatc cagaaattat ggaagagata
1021 tcaaggacaa aggtcgacta tatagacacg aagaatatca atcccgatat ggctctcgga
1081 ttcttcttgg acttcttgat gggtgacaag agtacgatca gaaacgtttt tggtaggatc
1141 aagcggtttc agccaaatag acctgttacg aaagcacaag cagctgtagc attaacaagc
1201 ggtaaaatgg tgaaagctat cacagcagag ctatcaaggt tagaagcaga gtccctctcg
1261 cagaaagctg agacagaaga aatcagatcg gaattgctag aaaaaggcga gataaggcaa
1321 ttttgggatg agaagattca ggcagagaga tcccgaggat ttgagatgga agagctgtat
1381 ctctctagag ttaatgaagt agaagaagaa aaaaccactc aggagaagtg gtctgcggag
1441 cgtttgaaag agaaagcagc catagactgt cagaaacagt tgcttaatag cttgactgag
1501 gagattgatg agatgtctca gaggctaata tctgataaat ctgtttatct gactgaacac
1561 agcaagttac aagagatgct aagtgactta caatcaaaac ttgaatcgct tatcgacaaa
1621 agatctatcc tcgaagctga agtcgaagct cttcggatac taagatcttg gatagaggat
1681 gaaggtaagg caagccaagc cagagctaag gttctcgaag aagcgggacg aagatggaaa
1741 tggaacgata atgcttgaat ctttcttcag attgtacaaa aatttgttga gtgatcattg
1801 tttgttatat taagcaaatc cacaaatttg gttttgttgg ttttttattt ggggaaagac
1861 aattgactat taacccttaa tccaatcttg gtttcaaatt aaagagagaa taaatgttga
1921 agaacct
//