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Arabidopsis thaliana Integrase-type DNA-binding superfamily protein (CRF10), mRNA

NCBI Reference Sequence: NM_105526.3

FASTA Graphics 

LOCUS       NM_105526               1830 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Integrase-type DNA-binding superfamily protein
            (CRF10), mRNA.
ACCESSION   NM_105526
VERSION     NM_105526.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1830)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1830)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1830)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1830)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1830)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Apr 18, 2007 this sequence version replaced NM_105526.2.
FEATURES             Location/Qualifiers
     source          1..1830
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1830
                     /gene="CRF10"
                     /locus_tag="AT1G68550"
                     /gene_synonym="cytokinin response factor 10; T26J14.12;
                     T26J14_12"
                     /note="encodes a member of the ERF (ethylene response
                     factor) subfamily B-6 of ERF/AP2 transcription factor
                     family. The protein contains one AP2 domain. There are 12
                     members in this subfamily including RAP2.11."
                     /db_xref="Araport:AT1G68550"
                     /db_xref="GeneID:843184"
                     /db_xref="TAIR:AT1G68550"
     CDS             501..1475
                     /gene="CRF10"
                     /locus_tag="AT1G68550"
                     /gene_synonym="cytokinin response factor 10; T26J14.12;
                     T26J14_12"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP666216.1,INSD:EL987981.1,INSD:AV806521.1,
                     INSD:F14268.1,INSD:EL971586.1,INSD:DR750024.1,
                     INSD:AV804443.1,INSD:DR288728.1,INSD:EH878870.1,
                     INSD:EL169447.1,INSD:ES037507.1,INSD:CA963961.1,
                     INSD:AV791001.1,INSD:H76458.1,INSD:EL978708.1,
                     INSD:DR370540.1,INSD:ES190611.1,INSD:DR288727.1,
                     INSD:EL977802.1,INSD:AV533904.1,INSD:DR288726.1,
                     INSD:EL982431.1,INSD:BP650676.1,INSD:N65486.1,
                     INSD:EL107774.1,INSD:ES161393.1,INSD:EL968849.1,
                     INSD:BP667498.1,INSD:EL203660.1,INSD:EL969158.1,
                     INSD:BP649342.1,INSD:DR750023.1,INSD:EL972244.1,
                     INSD:EL041117.1,INSD:Z34128.1,INSD:ES171658.1,
                     INSD:EL975605.1,INSD:DR288725.1,INSD:ES069042.1,
                     INSD:BP666207.1,INSD:EH804180.1,INSD:EL236155.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX814206.1,INSD:BX818675.1,INSD:AY059782.1,
                     INSD:AY091303.1"
                     /note="Integrase-type DNA-binding superfamily protein;
                     FUNCTIONS IN: DNA binding, sequence-specific DNA binding
                     transcription factor activity; INVOLVED IN: regulation of
                     transcription, DNA-dependent; LOCATED IN: nucleus;
                     EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s:
                     DNA-binding, integrase-type (InterPro:IPR016177),
                     Pathogenesis-related transcriptional factor/ERF,
                     DNA-binding (InterPro:IPR001471); BEST Arabidopsis
                     thaliana protein match is: Integrase-type DNA-binding
                     superfamily protein (TAIR:AT3G25890.2); Has 4835 Blast
                     hits to 4832 proteins in 228 species: Archae - 0; Bacteria
                     - 2; Metazoa - 14; Fungi - 3; Plants - 4809; Viruses - 0;
                     Other Eukaryotes - 7 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Integrase-type DNA-binding superfamily protein"
                     /protein_id="NP_177022.1"
                     /db_xref="Araport:AT1G68550"
                     /db_xref="GeneID:843184"
                     /db_xref="TAIR:AT1G68550"
                     /translation="MVAIRKEQSLSGVSSEIKKRAKRNTLSSLPQETQPLRKVRIIVN
                     DPYATDDSSSDEEELKVPKPRKMKRIVREINFPSMEVSEQPSESSSQDSTKTDGKIAV
                     SASPAVPRKKPVGVRQRKWGKWAAEIRDPIKKTRTWLGTFDTLEEAAKAYDAKKLEFD
                     AIVAGNVSTTKRDVSSSETSQCSRSSPVVPVEQDDTSASALTCVNNPDDVSTVAPTAP
                     TPNVPAGGNKETLFDFDFTNLQIPDFGFLAEEQQDLDFDCFLADDQFDDFGLLDDIQG
                     FEDNGPSALPDFDFADVEDLQLADSSFGFLDQLAPINISCPLKSFAAS"
ORIGIN      
        1 attcacaaga agaaaaaaaa aagtgtgaaa ggaaaagaga gagagaaaaa aatcagaaga
       61 aacaacagca acaaggaaca gtgaaaggtt cggttttttg ggtttcgatc tgataatcaa
      121 caagaaaaaa gggtttgatt tatgtcggct gggtttgaat cgactgtgat tttgtctttg
      181 attcatatct cttctccgat ttcatcatca tcttccccat catcgtcgtc tttgaaatct
      241 tgtcttctca acgctcttca cttctgctgt aataagcaga ggcttgttct ggagactcct
      301 tctctttcca tgcgcttaag acccaaaagg acttgttcta gtgttgaagt ctttgggggt
      361 tttcacataa agcagcaaaa gttttctttt ttcatagttc gctgagagtt ttgagttttg
      421 ataccaaaaa agttttgacc ttttagagtg attttttgtt ctttctgttt tctgggtatt
      481 tttgaggagt gggtttaaca atggttgcga ttagaaagga acagtctttg agtggtgtta
      541 gtagcgagat taagaagaga gctaagagaa acactctatc gtcccttcct caagaaaccc
      601 aacctttgag gaaagtccgt attattgtga atgatcctta tgctactgat gattcctcta
      661 gtgatgagga agagcttaag gttcctaagc caaggaaaat gaaacgtatc gttcgtgaga
      721 ttaactttcc ttctatggaa gtttctgaac agccttctga gagttcttct caggacagta
      781 ctaaaactga tggcaagata gctgtgtcag cttctcctgc tgttcctagg aagaagcctg
      841 ttggtgttag gcaaaggaaa tgggggaaat gggctgctga gattagagat cctattaaga
      901 aaactaggac ttggttgggt acttttgata ctcttgaaga agctgctaaa gcttatgatg
      961 ctaagaagct tgagtttgat gctattgttg ctggaaatgt gtccactact aaacgtgatg
     1021 tttcttcatc tgagactagc caatgctctc gttcttcacc tgttgttcct gttgagcaag
     1081 atgacacttc tgcatcagct ctcacttgtg tcaacaaccc tgatgacgtc tcgaccgttg
     1141 ctccaactgc tccaactcca aatgttcctg ctggtggaaa caaggaaacg ttgttcgatt
     1201 tcgactttac taatctacag atccctgatt ttggtttctt ggcagaggag caacaagacc
     1261 tagacttcga ttgtttcctc gcggatgatc agtttgatga tttcggcttg cttgatgaca
     1321 ttcaaggatt cgaagataac ggtccaagtg cgttaccaga tttcgacttt gcggatgttg
     1381 aagatcttca gctagctgac tctagtttcg gtttccttga tcaacttgct cctatcaaca
     1441 tctcttgccc attaaaaagt tttgcagctt cataggatct tgcttagtaa tgttaagtga
     1501 gaagagtgtt ttgttttttc gtttatgctt tagtaattta agacatacaa aagtgtgtgt
     1561 tccggattgt agtaagatct taagacataa agccgggttt tgcaattagg aatcgagttt
     1621 taatgaagtt ttagtttatg tttgattgat gttttgctga ttctggtttc tcttctcttt
     1681 tactttgggt ttttcattgt gcttttaaga gccgtccaaa gtgaaagagt tttgatgaga
     1741 attccactgt cagttttatt acatcattct ccactttcat ctttcgttaa tgtgaaaaac
     1801 aaaatattaa tggaagaagc tttttagttt
//
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