LOCUS NM_105526 1830 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Integrase-type DNA-binding superfamily protein
(CRF10), mRNA.
ACCESSION NM_105526
VERSION NM_105526.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1830)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1830)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Apr 18, 2007 this sequence version replaced NM_105526.2.
FEATURES Location/Qualifiers
source 1..1830
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1830
/gene="CRF10"
/locus_tag="AT1G68550"
/gene_synonym="cytokinin response factor 10; T26J14.12;
T26J14_12"
/note="encodes a member of the ERF (ethylene response
factor) subfamily B-6 of ERF/AP2 transcription factor
family. The protein contains one AP2 domain. There are 12
members in this subfamily including RAP2.11."
/db_xref="Araport:AT1G68550"
/db_xref="GeneID:843184"
/db_xref="TAIR:AT1G68550"
CDS 501..1475
/gene="CRF10"
/locus_tag="AT1G68550"
/gene_synonym="cytokinin response factor 10; T26J14.12;
T26J14_12"
/inference="Similar to RNA sequence,
EST:INSD:BP666216.1,INSD:EL987981.1,INSD:AV806521.1,
INSD:F14268.1,INSD:EL971586.1,INSD:DR750024.1,
INSD:AV804443.1,INSD:DR288728.1,INSD:EH878870.1,
INSD:EL169447.1,INSD:ES037507.1,INSD:CA963961.1,
INSD:AV791001.1,INSD:H76458.1,INSD:EL978708.1,
INSD:DR370540.1,INSD:ES190611.1,INSD:DR288727.1,
INSD:EL977802.1,INSD:AV533904.1,INSD:DR288726.1,
INSD:EL982431.1,INSD:BP650676.1,INSD:N65486.1,
INSD:EL107774.1,INSD:ES161393.1,INSD:EL968849.1,
INSD:BP667498.1,INSD:EL203660.1,INSD:EL969158.1,
INSD:BP649342.1,INSD:DR750023.1,INSD:EL972244.1,
INSD:EL041117.1,INSD:Z34128.1,INSD:ES171658.1,
INSD:EL975605.1,INSD:DR288725.1,INSD:ES069042.1,
INSD:BP666207.1,INSD:EH804180.1,INSD:EL236155.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX814206.1,INSD:BX818675.1,INSD:AY059782.1,
INSD:AY091303.1"
/note="Integrase-type DNA-binding superfamily protein;
FUNCTIONS IN: DNA binding, sequence-specific DNA binding
transcription factor activity; INVOLVED IN: regulation of
transcription, DNA-dependent; LOCATED IN: nucleus;
EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s:
DNA-binding, integrase-type (InterPro:IPR016177),
Pathogenesis-related transcriptional factor/ERF,
DNA-binding (InterPro:IPR001471); BEST Arabidopsis
thaliana protein match is: Integrase-type DNA-binding
superfamily protein (TAIR:AT3G25890.2); Has 4835 Blast
hits to 4832 proteins in 228 species: Archae - 0; Bacteria
- 2; Metazoa - 14; Fungi - 3; Plants - 4809; Viruses - 0;
Other Eukaryotes - 7 (source: NCBI BLink)."
/codon_start=1
/product="Integrase-type DNA-binding superfamily protein"
/protein_id="NP_177022.1"
/db_xref="Araport:AT1G68550"
/db_xref="GeneID:843184"
/db_xref="TAIR:AT1G68550"
/translation="MVAIRKEQSLSGVSSEIKKRAKRNTLSSLPQETQPLRKVRIIVN
DPYATDDSSSDEEELKVPKPRKMKRIVREINFPSMEVSEQPSESSSQDSTKTDGKIAV
SASPAVPRKKPVGVRQRKWGKWAAEIRDPIKKTRTWLGTFDTLEEAAKAYDAKKLEFD
AIVAGNVSTTKRDVSSSETSQCSRSSPVVPVEQDDTSASALTCVNNPDDVSTVAPTAP
TPNVPAGGNKETLFDFDFTNLQIPDFGFLAEEQQDLDFDCFLADDQFDDFGLLDDIQG
FEDNGPSALPDFDFADVEDLQLADSSFGFLDQLAPINISCPLKSFAAS"
ORIGIN
1 attcacaaga agaaaaaaaa aagtgtgaaa ggaaaagaga gagagaaaaa aatcagaaga
61 aacaacagca acaaggaaca gtgaaaggtt cggttttttg ggtttcgatc tgataatcaa
121 caagaaaaaa gggtttgatt tatgtcggct gggtttgaat cgactgtgat tttgtctttg
181 attcatatct cttctccgat ttcatcatca tcttccccat catcgtcgtc tttgaaatct
241 tgtcttctca acgctcttca cttctgctgt aataagcaga ggcttgttct ggagactcct
301 tctctttcca tgcgcttaag acccaaaagg acttgttcta gtgttgaagt ctttgggggt
361 tttcacataa agcagcaaaa gttttctttt ttcatagttc gctgagagtt ttgagttttg
421 ataccaaaaa agttttgacc ttttagagtg attttttgtt ctttctgttt tctgggtatt
481 tttgaggagt gggtttaaca atggttgcga ttagaaagga acagtctttg agtggtgtta
541 gtagcgagat taagaagaga gctaagagaa acactctatc gtcccttcct caagaaaccc
601 aacctttgag gaaagtccgt attattgtga atgatcctta tgctactgat gattcctcta
661 gtgatgagga agagcttaag gttcctaagc caaggaaaat gaaacgtatc gttcgtgaga
721 ttaactttcc ttctatggaa gtttctgaac agccttctga gagttcttct caggacagta
781 ctaaaactga tggcaagata gctgtgtcag cttctcctgc tgttcctagg aagaagcctg
841 ttggtgttag gcaaaggaaa tgggggaaat gggctgctga gattagagat cctattaaga
901 aaactaggac ttggttgggt acttttgata ctcttgaaga agctgctaaa gcttatgatg
961 ctaagaagct tgagtttgat gctattgttg ctggaaatgt gtccactact aaacgtgatg
1021 tttcttcatc tgagactagc caatgctctc gttcttcacc tgttgttcct gttgagcaag
1081 atgacacttc tgcatcagct ctcacttgtg tcaacaaccc tgatgacgtc tcgaccgttg
1141 ctccaactgc tccaactcca aatgttcctg ctggtggaaa caaggaaacg ttgttcgatt
1201 tcgactttac taatctacag atccctgatt ttggtttctt ggcagaggag caacaagacc
1261 tagacttcga ttgtttcctc gcggatgatc agtttgatga tttcggcttg cttgatgaca
1321 ttcaaggatt cgaagataac ggtccaagtg cgttaccaga tttcgacttt gcggatgttg
1381 aagatcttca gctagctgac tctagtttcg gtttccttga tcaacttgct cctatcaaca
1441 tctcttgccc attaaaaagt tttgcagctt cataggatct tgcttagtaa tgttaagtga
1501 gaagagtgtt ttgttttttc gtttatgctt tagtaattta agacatacaa aagtgtgtgt
1561 tccggattgt agtaagatct taagacataa agccgggttt tgcaattagg aatcgagttt
1621 taatgaagtt ttagtttatg tttgattgat gttttgctga ttctggtttc tcttctcttt
1681 tactttgggt ttttcattgt gcttttaaga gccgtccaaa gtgaaagagt tttgatgaga
1741 attccactgt cagttttatt acatcattct ccactttcat ctttcgttaa tgtgaaaaac
1801 aaaatattaa tggaagaagc tttttagttt
//