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Arabidopsis thaliana uncharacterized protein (AT1G68440), mRNA

NCBI Reference Sequence: NM_105515.3

FASTA Graphics 

LOCUS       NM_105515               1728 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana uncharacterized protein (AT1G68440), mRNA.
ACCESSION   NM_105515
VERSION     NM_105515.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1728)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1728)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1728)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1728)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_105515.2.
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1728
                     /locus_tag="AT1G68440"
                     /gene_synonym="T2E12.1; T2E12_1"
                     /db_xref="Araport:AT1G68440"
                     /db_xref="GeneID:843173"
                     /db_xref="TAIR:AT1G68440"
     CDS             359..1279
                     /locus_tag="AT1G68440"
                     /gene_synonym="T2E12.1; T2E12_1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH838341.1,INSD:BP801512.1,INSD:EH808375.1,
                     INSD:EH894460.1,INSD:AV820035.1,INSD:DR335634.1,
                     INSD:CD530422.1,INSD:AV804214.1,INSD:DR335636.1,
                     INSD:Z37636.1,INSD:AV826973.1,INSD:DR335638.1,
                     INSD:EH933522.1,INSD:AV812556.1,INSD:T03985.1,
                     INSD:BP571373.1,INSD:BP620483.1,INSD:BP640402.1,
                     INSD:AV808096.1,INSD:BP601354.1,INSD:AV442620.1,
                     INSD:EH834022.1,INSD:BP572690.1,INSD:EG516077.1,
                     INSD:BP651317.1,INSD:ES006304.1,INSD:BP571870.1,
                     INSD:BP814275.1,INSD:CD530670.1,INSD:DR335626.1,
                     INSD:BP641951.1,INSD:AI998338.1,INSD:BP589298.1,
                     INSD:EL988542.1,INSD:EH940270.1,INSD:EG495811.1,
                     INSD:EL186643.1,INSD:CD531525.1,INSD:DR335639.1,
                     INSD:EL276399.1,INSD:ES015227.1,INSD:DR335630.1,
                     INSD:DR335635.1,INSD:DR335637.1,INSD:DR375284.1,
                     INSD:EL301537.1,INSD:BP811684.1,INSD:EG520597.1,
                     INSD:BP644906.1,INSD:BP805232.1,INSD:EL162420.1,
                     INSD:BP843131.1,INSD:BP653353.1,INSD:EH977652.1,
                     INSD:EL242531.1,INSD:EG520585.1,INSD:EL195903.1,
                     INSD:ES213587.1,INSD:AV792645.1,INSD:EH987201.1,
                     INSD:EL211371.1,INSD:EG484886.1,INSD:EH937180.1,
                     INSD:EL040543.1,INSD:DR335625.1,INSD:EH837185.1,
                     INSD:EH799169.1,INSD:BP583393.1,INSD:EL291357.1,
                     INSD:EL067338.1,INSD:EH891055.1,INSD:EH962509.1,
                     INSD:DR335629.1,INSD:DR335631.1,INSD:BP643871.1,
                     INSD:CB261323.1,INSD:BP578488.1,INSD:BP625428.1,
                     INSD:EG498016.1,INSD:EL032536.1,INSD:BP837776.1,
                     INSD:DR335633.1,INSD:EH834018.1,INSD:BP572569.1,
                     INSD:EG484763.1,INSD:EL117912.1,INSD:EL126080.1,
                     INSD:EH842797.1,INSD:EG495810.1,INSD:DR335632.1,
                     INSD:BP780299.1,INSD:BP813752.1,INSD:EL125048.1,
                     INSD:BP652136.1,INSD:EL134848.1,INSD:BP608902.1,
                     INSD:AV440903.1,INSD:BP822360.1,INSD:DR335628.1,
                     INSD:BP575075.1,INSD:EG495819.1,INSD:AV797348.1,
                     INSD:EL247440.1,INSD:ES039702.1,INSD:EL132395.1,
                     INSD:ES130242.1,INSD:BP580595.1,INSD:EH937997.1,
                     INSD:BP796688.1,INSD:EL160977.1,INSD:EL191746.1,
                     INSD:BP819031.1,INSD:EH901419.1,INSD:EL295697.1,
                     INSD:EL083326.1,INSD:EH803175.1,INSD:BP569103.1,
                     INSD:DR335623.1,INSD:EH917076.1,INSD:EL141194.1,
                     INSD:EL075222.1,INSD:EL203769.1,INSD:AV532679.1,
                     INSD:EH889839.1,INSD:DR335624.1,INSD:BE844688.1,
                     INSD:AA713041.1,INSD:BP597235.1,INSD:DR335622.1,
                     INSD:AV796905.1,INSD:AV534660.1,INSD:AV519577.1,
                     INSD:BP820370.1,INSD:AV787900.1,INSD:EL173038.1,
                     INSD:EL015482.1,INSD:EG495820.1,INSD:DR335627.1,
                     INSD:EL157607.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY058163.1,INSD:AY124826.1,INSD:BX818446.1,
                     INSD:AY087321.1"
                     /note="unknown protein; BEST Arabidopsis thaliana protein
                     match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast
                     hits to 86 proteins in 29 species: Archae - 0; Bacteria -
                     6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0;
                     Other Eukaryotes - 18 (source: NCBI BLink)."
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="NP_564930.1"
                     /db_xref="Araport:AT1G68440"
                     /db_xref="GeneID:843173"
                     /db_xref="TAIR:AT1G68440"
                     /translation="MEVPVINRIRDFEVGINSINDPSFLSRSVAVSGIGKLHQAYGFW
                     KWGALIIAFLAYFTNFVSKLNSLVVRLRKIDVSVSSPTLFDDYDSDSDVSCSSTVSSD
                     DEKDEEDEADDEDEDVDSIFNRRRVNGGFRVRGSDYYDDDDDQGDNGNCTWMGRRYSG
                     SFGDLFSWPDLGGIGSSGVVKLWDHLDIDGDDHENVVATFLKNYNSTSSPFFWAAEKK
                     GVDAVKVKACDPRAGFRMPALLAEWRQPGRLLGNIIGVDTGGVEKVYVRDDVSGEIAV
                     GDLRKFNGVLTDLTECEAETWWDADVLISG"
ORIGIN      
        1 ggtggttcga accactcaaa aatatttatg ataataacac ccaaaaacaa actaaactat
       61 tatttattta ttgtggtcat gagatagtta cagacacaga gaatacatct gtcagaaagc
      121 tgactcattg tatcttatct ttcccatttc ctcttacctt ttttcctacg tgttgccaca
      181 aaactctcat cttcacccac tcaatctccg ccacgtgtac tctctaaccc ttcagttcgg
      241 tctttttaag gcttccccaa gccttcgcat ccaaatctct cttctttttt tctctctttc
      301 tcataacaac aaaaaaacaa aaaaaaaacc taattagttt tttctttctg cagagattat
      361 ggaggtaccg gtgattaata gaataagaga tttcgaagtt ggtataaact cgattaatga
      421 tccttcgttt ctttctcgat ctgttgctgt ttccggaatc ggaaagctac accaagctta
      481 tggtttttgg aaatggggag ctttgattat cgcatttcta gcttatttca ccaactttgt
      541 tagtaaactc aacagtctag ttgttaggtt aagaaaaata gatgtctctg tttcctctcc
      601 aactcttttt gatgattacg atagcgattc cgatgtttct tgttcctcta ccgtctcctc
      661 tgacgatgaa aaagacgaag aagatgaggc tgatgatgaa gatgaggatg ttgactcgat
      721 ctttaatcga agacgagtca acggaggttt ccgcgttaga ggatctgatt attacgatga
      781 tgatgatgat cagggagaca atggtaattg cacatggatg gggaggcgat atagtggtag
      841 ttttggagat ttgttctcat ggcctgatct tggtgggatt ggttcgagtg gagtcgtgaa
      901 gctttgggat catttagata tcgatggcga tgatcatgag aatgttgtgg caacgtttct
      961 caagaactat aactcaacct cgtcaccgtt tttttgggcg gcggagaaaa aaggtgttga
     1021 cgccgttaaa gtgaaggcgt gtgatccacg cgccggtttt cggatgccgg ctttgctcgc
     1081 ggagtggagg cagccggggc ggttgttagg gaatataatc ggagttgata ccggtggtgt
     1141 ggagaaagta tacgtcaggg atgatgttag cggagagata gccgtgggag atttgaggaa
     1201 gtttaacggt gtgttgacgg acttgacgga atgtgaggct gagacttggt gggacgctga
     1261 cgtccttatc tcgggctgat ggaatccttg acgagagaaa atattggttg ggacggtttt
     1321 gtcttaaagt taagaggacg gacgaaagat tcaacgccaa aaagaagtgt taaagattaa
     1381 tgagaacgac gcaacgtttt gtaaataatt tgtctgtttg cttctctgcg atttttattt
     1441 taaaatttta gttttgattg aataaaaatc agcgtcagat taataaaagt gtttgtgtgt
     1501 ttggtcggtt actagttcac ttgttctctg gctccatgtg aagtgaagcc actacccaat
     1561 gtggctggtt acgagttttc taataggttt ggaattaagt gatgtgatta aaatatgaca
     1621 gaaagtcaga aatcacaaaa agaacaaata taatattgaa gataattcag gatatatatt
     1681 atactaacat aatagaaact tgaaaagata accataacat taaaaccc
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for uncharacterized protein AT1G68440 (NP_564930.1).

More about the AT1G68440 gene

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