LOCUS NM_105515 1728 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana uncharacterized protein (AT1G68440), mRNA.
ACCESSION NM_105515
VERSION NM_105515.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1728)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1728)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1728)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1728)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1728)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_105515.2.
FEATURES Location/Qualifiers
source 1..1728
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1728
/locus_tag="AT1G68440"
/gene_synonym="T2E12.1; T2E12_1"
/db_xref="Araport:AT1G68440"
/db_xref="GeneID:843173"
/db_xref="TAIR:AT1G68440"
CDS 359..1279
/locus_tag="AT1G68440"
/gene_synonym="T2E12.1; T2E12_1"
/inference="Similar to RNA sequence,
EST:INSD:EH838341.1,INSD:BP801512.1,INSD:EH808375.1,
INSD:EH894460.1,INSD:AV820035.1,INSD:DR335634.1,
INSD:CD530422.1,INSD:AV804214.1,INSD:DR335636.1,
INSD:Z37636.1,INSD:AV826973.1,INSD:DR335638.1,
INSD:EH933522.1,INSD:AV812556.1,INSD:T03985.1,
INSD:BP571373.1,INSD:BP620483.1,INSD:BP640402.1,
INSD:AV808096.1,INSD:BP601354.1,INSD:AV442620.1,
INSD:EH834022.1,INSD:BP572690.1,INSD:EG516077.1,
INSD:BP651317.1,INSD:ES006304.1,INSD:BP571870.1,
INSD:BP814275.1,INSD:CD530670.1,INSD:DR335626.1,
INSD:BP641951.1,INSD:AI998338.1,INSD:BP589298.1,
INSD:EL988542.1,INSD:EH940270.1,INSD:EG495811.1,
INSD:EL186643.1,INSD:CD531525.1,INSD:DR335639.1,
INSD:EL276399.1,INSD:ES015227.1,INSD:DR335630.1,
INSD:DR335635.1,INSD:DR335637.1,INSD:DR375284.1,
INSD:EL301537.1,INSD:BP811684.1,INSD:EG520597.1,
INSD:BP644906.1,INSD:BP805232.1,INSD:EL162420.1,
INSD:BP843131.1,INSD:BP653353.1,INSD:EH977652.1,
INSD:EL242531.1,INSD:EG520585.1,INSD:EL195903.1,
INSD:ES213587.1,INSD:AV792645.1,INSD:EH987201.1,
INSD:EL211371.1,INSD:EG484886.1,INSD:EH937180.1,
INSD:EL040543.1,INSD:DR335625.1,INSD:EH837185.1,
INSD:EH799169.1,INSD:BP583393.1,INSD:EL291357.1,
INSD:EL067338.1,INSD:EH891055.1,INSD:EH962509.1,
INSD:DR335629.1,INSD:DR335631.1,INSD:BP643871.1,
INSD:CB261323.1,INSD:BP578488.1,INSD:BP625428.1,
INSD:EG498016.1,INSD:EL032536.1,INSD:BP837776.1,
INSD:DR335633.1,INSD:EH834018.1,INSD:BP572569.1,
INSD:EG484763.1,INSD:EL117912.1,INSD:EL126080.1,
INSD:EH842797.1,INSD:EG495810.1,INSD:DR335632.1,
INSD:BP780299.1,INSD:BP813752.1,INSD:EL125048.1,
INSD:BP652136.1,INSD:EL134848.1,INSD:BP608902.1,
INSD:AV440903.1,INSD:BP822360.1,INSD:DR335628.1,
INSD:BP575075.1,INSD:EG495819.1,INSD:AV797348.1,
INSD:EL247440.1,INSD:ES039702.1,INSD:EL132395.1,
INSD:ES130242.1,INSD:BP580595.1,INSD:EH937997.1,
INSD:BP796688.1,INSD:EL160977.1,INSD:EL191746.1,
INSD:BP819031.1,INSD:EH901419.1,INSD:EL295697.1,
INSD:EL083326.1,INSD:EH803175.1,INSD:BP569103.1,
INSD:DR335623.1,INSD:EH917076.1,INSD:EL141194.1,
INSD:EL075222.1,INSD:EL203769.1,INSD:AV532679.1,
INSD:EH889839.1,INSD:DR335624.1,INSD:BE844688.1,
INSD:AA713041.1,INSD:BP597235.1,INSD:DR335622.1,
INSD:AV796905.1,INSD:AV534660.1,INSD:AV519577.1,
INSD:BP820370.1,INSD:AV787900.1,INSD:EL173038.1,
INSD:EL015482.1,INSD:EG495820.1,INSD:DR335627.1,
INSD:EL157607.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY058163.1,INSD:AY124826.1,INSD:BX818446.1,
INSD:AY087321.1"
/note="unknown protein; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast
hits to 86 proteins in 29 species: Archae - 0; Bacteria -
6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0;
Other Eukaryotes - 18 (source: NCBI BLink)."
/codon_start=1
/product="uncharacterized protein"
/protein_id="NP_564930.1"
/db_xref="Araport:AT1G68440"
/db_xref="GeneID:843173"
/db_xref="TAIR:AT1G68440"
/translation="MEVPVINRIRDFEVGINSINDPSFLSRSVAVSGIGKLHQAYGFW
KWGALIIAFLAYFTNFVSKLNSLVVRLRKIDVSVSSPTLFDDYDSDSDVSCSSTVSSD
DEKDEEDEADDEDEDVDSIFNRRRVNGGFRVRGSDYYDDDDDQGDNGNCTWMGRRYSG
SFGDLFSWPDLGGIGSSGVVKLWDHLDIDGDDHENVVATFLKNYNSTSSPFFWAAEKK
GVDAVKVKACDPRAGFRMPALLAEWRQPGRLLGNIIGVDTGGVEKVYVRDDVSGEIAV
GDLRKFNGVLTDLTECEAETWWDADVLISG"
ORIGIN
1 ggtggttcga accactcaaa aatatttatg ataataacac ccaaaaacaa actaaactat
61 tatttattta ttgtggtcat gagatagtta cagacacaga gaatacatct gtcagaaagc
121 tgactcattg tatcttatct ttcccatttc ctcttacctt ttttcctacg tgttgccaca
181 aaactctcat cttcacccac tcaatctccg ccacgtgtac tctctaaccc ttcagttcgg
241 tctttttaag gcttccccaa gccttcgcat ccaaatctct cttctttttt tctctctttc
301 tcataacaac aaaaaaacaa aaaaaaaacc taattagttt tttctttctg cagagattat
361 ggaggtaccg gtgattaata gaataagaga tttcgaagtt ggtataaact cgattaatga
421 tccttcgttt ctttctcgat ctgttgctgt ttccggaatc ggaaagctac accaagctta
481 tggtttttgg aaatggggag ctttgattat cgcatttcta gcttatttca ccaactttgt
541 tagtaaactc aacagtctag ttgttaggtt aagaaaaata gatgtctctg tttcctctcc
601 aactcttttt gatgattacg atagcgattc cgatgtttct tgttcctcta ccgtctcctc
661 tgacgatgaa aaagacgaag aagatgaggc tgatgatgaa gatgaggatg ttgactcgat
721 ctttaatcga agacgagtca acggaggttt ccgcgttaga ggatctgatt attacgatga
781 tgatgatgat cagggagaca atggtaattg cacatggatg gggaggcgat atagtggtag
841 ttttggagat ttgttctcat ggcctgatct tggtgggatt ggttcgagtg gagtcgtgaa
901 gctttgggat catttagata tcgatggcga tgatcatgag aatgttgtgg caacgtttct
961 caagaactat aactcaacct cgtcaccgtt tttttgggcg gcggagaaaa aaggtgttga
1021 cgccgttaaa gtgaaggcgt gtgatccacg cgccggtttt cggatgccgg ctttgctcgc
1081 ggagtggagg cagccggggc ggttgttagg gaatataatc ggagttgata ccggtggtgt
1141 ggagaaagta tacgtcaggg atgatgttag cggagagata gccgtgggag atttgaggaa
1201 gtttaacggt gtgttgacgg acttgacgga atgtgaggct gagacttggt gggacgctga
1261 cgtccttatc tcgggctgat ggaatccttg acgagagaaa atattggttg ggacggtttt
1321 gtcttaaagt taagaggacg gacgaaagat tcaacgccaa aaagaagtgt taaagattaa
1381 tgagaacgac gcaacgtttt gtaaataatt tgtctgtttg cttctctgcg atttttattt
1441 taaaatttta gttttgattg aataaaaatc agcgtcagat taataaaagt gtttgtgtgt
1501 ttggtcggtt actagttcac ttgttctctg gctccatgtg aagtgaagcc actacccaat
1561 gtggctggtt acgagttttc taataggttt ggaattaagt gatgtgatta aaatatgaca
1621 gaaagtcaga aatcacaaaa agaacaaata taatattgaa gataattcag gatatatatt
1681 atactaacat aatagaaact tgaaaagata accataacat taaaaccc
//