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Arabidopsis thaliana lysophospholipase 2 (LysoPL2), mRNA

NCBI Reference Sequence: NM_104154.4

FASTA Graphics 

LOCUS       NM_104154               1454 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana lysophospholipase 2 (LysoPL2), mRNA.
ACCESSION   NM_104154
VERSION     NM_104154.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1454)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1454)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1454)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1454)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1454)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_104154.3.
FEATURES             Location/Qualifiers
     source          1..1454
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1454
                     /gene="LysoPL2"
                     /locus_tag="AT1G52760"
                     /gene_synonym="Caffeoyl Shikimate Esterase; CSE; F14G24.3;
                     F14G24_3; lysophospholipase 2"
                     /note="Encodes a lysophospholipase 2 (LysoPL2). Involved
                     in tolerance to cadmium-induced oxidative stress. Binds
                     Acyl-CoA-binding protein 2 (ACBP2)."
                     /db_xref="Araport:AT1G52760"
                     /db_xref="GeneID:841709"
                     /db_xref="TAIR:AT1G52760"
     CDS             207..1205
                     /gene="LysoPL2"
                     /locus_tag="AT1G52760"
                     /gene_synonym="Caffeoyl Shikimate Esterase; CSE; F14G24.3;
                     F14G24_3; lysophospholipase 2"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL061966.1,INSD:T76656.1,INSD:BP648623.1,
                     INSD:ES174637.1,INSD:AV832073.1,INSD:AA042211.1,
                     INSD:BP838275.1,INSD:EH945127.1,INSD:BP656589.1,
                     INSD:EH905377.1,INSD:ES108435.1,INSD:BP603259.1,
                     INSD:AI999098.1,INSD:Z37626.1,INSD:AV817312.1,
                     INSD:AV562823.1,INSD:CA781772.1,INSD:EL160523.1,
                     INSD:CB074499.1,INSD:AV556933.1,INSD:AV819070.1,
                     INSD:EL062099.1,INSD:T76655.1,INSD:ES129484.1,
                     INSD:AV805311.1,INSD:BP822043.1,INSD:ES176379.1,
                     INSD:BP636694.1,INSD:ES071745.1,INSD:EL074904.1,
                     INSD:EG477550.1,INSD:ES019539.1,INSD:ES216156.1,
                     INSD:BP571006.1,INSD:BE039426.1,INSD:ES109513.1,
                     INSD:BP587418.1,INSD:EG477552.1,INSD:BP663697.1,
                     INSD:ES022987.1,INSD:EL983922.1,INSD:EL063535.1,
                     INSD:DR375854.1,INSD:BP568716.1,INSD:EL330896.1,
                     INSD:EH852458.1,INSD:Z37625.1,INSD:EH901936.1,
                     INSD:AV549344.1,INSD:BP838088.1,INSD:EG463720.1,
                     INSD:EG512254.1,INSD:EG463721.1,INSD:BP824893.1,
                     INSD:BP624565.1,INSD:ES048776.1,INSD:DR186293.1,
                     INSD:BP622443.1,INSD:ES115638.1,INSD:BP618396.1,
                     INSD:DR186292.1,INSD:BP571300.1,INSD:BE039557.1,
                     INSD:ES133246.1,INSD:EH924950.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY054577.1,INSD:AY089132.1,INSD:BT008729.1"
                     /note="lysophospholipase 2 (LysoPL2); BEST Arabidopsis
                     thaliana protein match is: alpha/beta-Hydrolases
                     superfamily protein (TAIR:AT1G11090.1); Has 2373 Blast
                     hits to 2373 proteins in 808 species: Archae - 32;
                     Bacteria - 1418; Metazoa - 106; Fungi - 99; Plants - 433;
                     Viruses - 39; Other Eukaryotes - 246 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="lysophospholipase 2"
                     /protein_id="NP_175685.1"
                     /db_xref="Araport:AT1G52760"
                     /db_xref="GeneID:841709"
                     /db_xref="TAIR:AT1G52760"
                     /translation="MPSEAESSANSAPATPPPPPNFWGTMPEEEYYTSQGVRNSKSYF
                     ETPNGKLFTQSFLPLDGEIKGTVYMSHGYGSDTSWMFQKICMSFSSWGYAVFAADLLG
                     HGRSDGIRCYMGDMEKVAATSLAFFKHVRCSDPYKDLPAFLFGESMGGLVTLLMYFQS
                     EPETWTGLMFSAPLFVIPEDMKPSKAHLFAYGLLFGLADTWAAMPDNKMVGKAIKDPE
                     KLKIIASNPQRYTGKPRVGTMRELLRKTQYVQENFGKVTIPVFTAHGTADGVTCPTSS
                     KLLYEKASSADKTLKIYEGMYHSLIQGEPDENAEIVLKDMREWIDEKVKKYGSKTA"
ORIGIN      
        1 attatggcta atgggttaat ctttaggaca aaatggatta tttttgcatt atacaaaatt
       61 taaaataata taaatgacat tttctttaat taattgtatt taatgccgta tatattaagt
      121 ataaactcat ttctcttcct cttgaaaaac tcactttatc accaccaaaa accaaaattc
      181 actgccaaaa aaaacacatc aaaacgatgc cgtcggaagc ggagagctca gcgaattcag
      241 ctccggcaac tccgccacca ccaccgaatt tctggggaac catgccggag gaagagtact
      301 acacttcaca aggagtacgt aacagcaaat catacttcga aacaccaaac ggcaagctct
      361 tcactcagag cttcttacca ttagatggtg aaatcaaagg cactgtgtac atgtctcatg
      421 gatacggatc cgatacaagc tggatgtttc agaagatctg tatgagtttc tctagttggg
      481 gttacgctgt tttcgccgcc gatcttctcg gtcacggccg ttccgatggt atccgctgct
      541 acatgggtga tatggagaaa gttgcagcaa catcattggc tttcttcaag catgttcgtt
      601 gtagtgatcc atataaggat cttccggctt ttctgtttgg tgaatcgatg ggaggtcttg
      661 tgacgctttt gatgtatttt caatcggaac ctgagacttg gaccggtttg atgttttcgg
      721 ctcctctctt tgttatccct gaggatatga aaccaagcaa ggctcatctt tttgcttatg
      781 gtctcctctt tggtttggct gatacgtggg ctgcaatgcc ggataataag atggttggga
      841 aggctatcaa ggaccctgaa aagcttaaga tcatcgcttc taacccgcaa agatatacag
      901 ggaagcctag agtgggaaca atgagagagt tactgaggaa gactcaatac gttcaggaga
      961 atttcgggaa agttactatt ccggtgttta cggcgcacgg gacagcggat ggagtaacat
     1021 gtcctacatc ttcgaagcta ctatacgaaa aagcgtcaag cgctgataaa acgttgaaga
     1081 tctatgaagg gatgtatcac tcgctgattc aaggagagcc tgacgagaac gctgagatag
     1141 tcttgaagga tatgagagag tggatcgatg agaaggttaa gaagtatgga tctaaaaccg
     1201 cttgaacaaa gctacatttg tgttacaaga acttgaagag aaatgtatat tgatgttatg
     1261 atccgtatcg tcgatttgac ttgttttgtt gtctgttgta atccaagaac atgaattttc
     1321 tgatgtaaga acttataata tcatggatta cagaaatcct tttatcattt ctaaaccttg
     1381 gattaagtac ttatacaaga ttaacatgtt taatgagcat ggacatagca taaaagatat
     1441 aatctttatt tcaa
//
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