LOCUS NM_104154 1454 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana lysophospholipase 2 (LysoPL2), mRNA.
ACCESSION NM_104154
VERSION NM_104154.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1454)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1454)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1454)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1454)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1454)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_104154.3.
FEATURES Location/Qualifiers
source 1..1454
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1454
/gene="LysoPL2"
/locus_tag="AT1G52760"
/gene_synonym="Caffeoyl Shikimate Esterase; CSE; F14G24.3;
F14G24_3; lysophospholipase 2"
/note="Encodes a lysophospholipase 2 (LysoPL2). Involved
in tolerance to cadmium-induced oxidative stress. Binds
Acyl-CoA-binding protein 2 (ACBP2)."
/db_xref="Araport:AT1G52760"
/db_xref="GeneID:841709"
/db_xref="TAIR:AT1G52760"
CDS 207..1205
/gene="LysoPL2"
/locus_tag="AT1G52760"
/gene_synonym="Caffeoyl Shikimate Esterase; CSE; F14G24.3;
F14G24_3; lysophospholipase 2"
/inference="Similar to RNA sequence,
EST:INSD:EL061966.1,INSD:T76656.1,INSD:BP648623.1,
INSD:ES174637.1,INSD:AV832073.1,INSD:AA042211.1,
INSD:BP838275.1,INSD:EH945127.1,INSD:BP656589.1,
INSD:EH905377.1,INSD:ES108435.1,INSD:BP603259.1,
INSD:AI999098.1,INSD:Z37626.1,INSD:AV817312.1,
INSD:AV562823.1,INSD:CA781772.1,INSD:EL160523.1,
INSD:CB074499.1,INSD:AV556933.1,INSD:AV819070.1,
INSD:EL062099.1,INSD:T76655.1,INSD:ES129484.1,
INSD:AV805311.1,INSD:BP822043.1,INSD:ES176379.1,
INSD:BP636694.1,INSD:ES071745.1,INSD:EL074904.1,
INSD:EG477550.1,INSD:ES019539.1,INSD:ES216156.1,
INSD:BP571006.1,INSD:BE039426.1,INSD:ES109513.1,
INSD:BP587418.1,INSD:EG477552.1,INSD:BP663697.1,
INSD:ES022987.1,INSD:EL983922.1,INSD:EL063535.1,
INSD:DR375854.1,INSD:BP568716.1,INSD:EL330896.1,
INSD:EH852458.1,INSD:Z37625.1,INSD:EH901936.1,
INSD:AV549344.1,INSD:BP838088.1,INSD:EG463720.1,
INSD:EG512254.1,INSD:EG463721.1,INSD:BP824893.1,
INSD:BP624565.1,INSD:ES048776.1,INSD:DR186293.1,
INSD:BP622443.1,INSD:ES115638.1,INSD:BP618396.1,
INSD:DR186292.1,INSD:BP571300.1,INSD:BE039557.1,
INSD:ES133246.1,INSD:EH924950.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY054577.1,INSD:AY089132.1,INSD:BT008729.1"
/note="lysophospholipase 2 (LysoPL2); BEST Arabidopsis
thaliana protein match is: alpha/beta-Hydrolases
superfamily protein (TAIR:AT1G11090.1); Has 2373 Blast
hits to 2373 proteins in 808 species: Archae - 32;
Bacteria - 1418; Metazoa - 106; Fungi - 99; Plants - 433;
Viruses - 39; Other Eukaryotes - 246 (source: NCBI
BLink)."
/codon_start=1
/product="lysophospholipase 2"
/protein_id="NP_175685.1"
/db_xref="Araport:AT1G52760"
/db_xref="GeneID:841709"
/db_xref="TAIR:AT1G52760"
/translation="MPSEAESSANSAPATPPPPPNFWGTMPEEEYYTSQGVRNSKSYF
ETPNGKLFTQSFLPLDGEIKGTVYMSHGYGSDTSWMFQKICMSFSSWGYAVFAADLLG
HGRSDGIRCYMGDMEKVAATSLAFFKHVRCSDPYKDLPAFLFGESMGGLVTLLMYFQS
EPETWTGLMFSAPLFVIPEDMKPSKAHLFAYGLLFGLADTWAAMPDNKMVGKAIKDPE
KLKIIASNPQRYTGKPRVGTMRELLRKTQYVQENFGKVTIPVFTAHGTADGVTCPTSS
KLLYEKASSADKTLKIYEGMYHSLIQGEPDENAEIVLKDMREWIDEKVKKYGSKTA"
ORIGIN
1 attatggcta atgggttaat ctttaggaca aaatggatta tttttgcatt atacaaaatt
61 taaaataata taaatgacat tttctttaat taattgtatt taatgccgta tatattaagt
121 ataaactcat ttctcttcct cttgaaaaac tcactttatc accaccaaaa accaaaattc
181 actgccaaaa aaaacacatc aaaacgatgc cgtcggaagc ggagagctca gcgaattcag
241 ctccggcaac tccgccacca ccaccgaatt tctggggaac catgccggag gaagagtact
301 acacttcaca aggagtacgt aacagcaaat catacttcga aacaccaaac ggcaagctct
361 tcactcagag cttcttacca ttagatggtg aaatcaaagg cactgtgtac atgtctcatg
421 gatacggatc cgatacaagc tggatgtttc agaagatctg tatgagtttc tctagttggg
481 gttacgctgt tttcgccgcc gatcttctcg gtcacggccg ttccgatggt atccgctgct
541 acatgggtga tatggagaaa gttgcagcaa catcattggc tttcttcaag catgttcgtt
601 gtagtgatcc atataaggat cttccggctt ttctgtttgg tgaatcgatg ggaggtcttg
661 tgacgctttt gatgtatttt caatcggaac ctgagacttg gaccggtttg atgttttcgg
721 ctcctctctt tgttatccct gaggatatga aaccaagcaa ggctcatctt tttgcttatg
781 gtctcctctt tggtttggct gatacgtggg ctgcaatgcc ggataataag atggttggga
841 aggctatcaa ggaccctgaa aagcttaaga tcatcgcttc taacccgcaa agatatacag
901 ggaagcctag agtgggaaca atgagagagt tactgaggaa gactcaatac gttcaggaga
961 atttcgggaa agttactatt ccggtgttta cggcgcacgg gacagcggat ggagtaacat
1021 gtcctacatc ttcgaagcta ctatacgaaa aagcgtcaag cgctgataaa acgttgaaga
1081 tctatgaagg gatgtatcac tcgctgattc aaggagagcc tgacgagaac gctgagatag
1141 tcttgaagga tatgagagag tggatcgatg agaaggttaa gaagtatgga tctaaaaccg
1201 cttgaacaaa gctacatttg tgttacaaga acttgaagag aaatgtatat tgatgttatg
1261 atccgtatcg tcgatttgac ttgttttgtt gtctgttgta atccaagaac atgaattttc
1321 tgatgtaaga acttataata tcatggatta cagaaatcct tttatcattt ctaaaccttg
1381 gattaagtac ttatacaaga ttaacatgtt taatgagcat ggacatagca taaaagatat
1441 aatctttatt tcaa
//