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Arabidopsis thaliana HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (HINT 2), mRNA

NCBI Reference Sequence: NM_102854.5

FASTA Graphics 

LOCUS       NM_102854                954 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (HINT 2),
            mRNA.
ACCESSION   NM_102854
VERSION     NM_102854.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 954)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 954)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 954)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 954)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_102854.4.
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..954
                     /gene="HINT 2"
                     /locus_tag="AT1G31160"
                     /gene_synonym="F28K20.9; F28K20_9; HISTIDINE TRIAD
                     NUCLEOTIDE-BINDING 2"
                     /note="Encodes a member of the histidine triad
                     nucleotide-binding family of proteins, but its activity
                     has not been determined."
                     /db_xref="Araport:AT1G31160"
                     /db_xref="GeneID:840001"
                     /db_xref="TAIR:AT1G31160"
     CDS             115..678
                     /gene="HINT 2"
                     /locus_tag="AT1G31160"
                     /gene_synonym="F28K20.9; F28K20_9; HISTIDINE TRIAD
                     NUCLEOTIDE-BINDING 2"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL211722.1,INSD:ES183877.1,INSD:EH909382.1,
                     INSD:ES203181.1,INSD:EL005489.1,INSD:AU229592.1,
                     INSD:ES116180.1,INSD:BP815682.1,INSD:EG522127.1,
                     INSD:EL995562.1,INSD:EL016310.1,INSD:EL241872.1,
                     INSD:EH828553.1,INSD:CK120036.1,INSD:ES036017.1,
                     INSD:ES168109.1,INSD:DR288973.1,INSD:BP835633.2,
                     INSD:AU238408.1,INSD:EL998489.1,INSD:EL066189.1,
                     INSD:BE525979.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AK117570.1,INSD:BX817600.1,INSD:BT005107.1"
                     /note="HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (HINT 2);
                     FUNCTIONS IN: protein kinase C binding, zinc ion binding,
                     catalytic activity; INVOLVED IN: biological_process
                     unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant
                     structures; EXPRESSED DURING: 13 growth stages; CONTAINS
                     InterPro DOMAIN/s: Histidine triad-like motif
                     (InterPro:IPR011146), Histidine triad, conserved site
                     (InterPro:IPR019808), Histidine triad (HIT) protein
                     (InterPro:IPR001310), Histidine triad motif
                     (InterPro:IPR011151); BEST Arabidopsis thaliana protein
                     match is: HIS triad family protein 3 (TAIR:AT3G56490.1);
                     Has 8225 Blast hits to 8223 proteins in 2654 species:
                     Archae - 159; Bacteria - 5014; Metazoa - 405; Fungi - 167;
                     Plants - 130; Viruses - 0; Other Eukaryotes - 2350
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="HISTIDINE TRIAD NUCLEOTIDE-BINDING 2"
                     /protein_id="NP_174401.1"
                     /db_xref="Araport:AT1G31160"
                     /db_xref="GeneID:840001"
                     /db_xref="TAIR:AT1G31160"
                     /translation="MAVTSSSMLLLRNFSTVGRVAQSVRVTSRIFFSTGELIRVLPYT
                     RSKRLICSTRAAHNEEAAAKAAASVADTGAPTIFDKIIAKEIPSDIVYEDENVLAFRD
                     INPQAPVHVLVIPKLRDGLTSLGKAEPRHVEVLGQLLHASKIVAEKEGILDGFRVVIN
                     NGVEACQSVYHLHLHVLGGRQMKWPPG"
ORIGIN      
        1 aaagagttaa aacgacgacg tatgttgata atctctaaat gacgtcgttt gattgaaaat
       61 gtcgtaagaa aaatcgatcg aaacggttag cgaatcgaag cagagagagc ttcaatggct
      121 gtcacttctt cctctatgct gctgcttcgg aacttctcta cggtgggaag agttgctcaa
      181 tctgttcgtg tgacttcgag gatcttcttc tccaccggag aattgattag ggttcttcct
      241 tatactcgtt ctaaaagatt gatctgttct actcgtgctg ctcataatga agaagccgcc
      301 gcgaaagctg cggcttctgt tgctgacacc ggagctccga ccatatttga caagattata
      361 gcaaaagaga ttccctcaga tattgtctat gaagatgaaa acgttttggc attcagagac
      421 attaaccctc aggctcctgt tcatgttttg gtcattccca agttgagaga tggcttgacc
      481 tcgcttggca aggctgaacc aagacacgta gaggttcttg gccaacttct acatgcatcg
      541 aagattgttg ctgagaaaga aggaatcctt gatgggttcc gtgtggttat caacaacggt
      601 gttgaagcct gccaatctgt ttaccatctt catctgcacg tcctcggagg ccgacagatg
      661 aaatggccac ccggttaaga agaaagattc atgtcaaccc aaagccaacg tgctccaaaa
      721 ttgtcaacta caatcctttc ttatatggtt tatgagtttt taccactatc ggattttatc
      781 cagttgtgaa ttcctagaga ttagatagct tccatttcca attgttatcg aattcttttt
      841 cttttttcat tgttagaaat aaatactaac aatttatatg atatgagtag tttctctcct
      901 acaattatcg tatatggatc tgtacatatt aatgagagtt aggagaacac aaca
//
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