LOCUS NM_102854 954 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (HINT 2),
mRNA.
ACCESSION NM_102854
VERSION NM_102854.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 954)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 954)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 954)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 954)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 954)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_102854.4.
FEATURES Location/Qualifiers
source 1..954
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..954
/gene="HINT 2"
/locus_tag="AT1G31160"
/gene_synonym="F28K20.9; F28K20_9; HISTIDINE TRIAD
NUCLEOTIDE-BINDING 2"
/note="Encodes a member of the histidine triad
nucleotide-binding family of proteins, but its activity
has not been determined."
/db_xref="Araport:AT1G31160"
/db_xref="GeneID:840001"
/db_xref="TAIR:AT1G31160"
CDS 115..678
/gene="HINT 2"
/locus_tag="AT1G31160"
/gene_synonym="F28K20.9; F28K20_9; HISTIDINE TRIAD
NUCLEOTIDE-BINDING 2"
/inference="Similar to RNA sequence,
EST:INSD:EL211722.1,INSD:ES183877.1,INSD:EH909382.1,
INSD:ES203181.1,INSD:EL005489.1,INSD:AU229592.1,
INSD:ES116180.1,INSD:BP815682.1,INSD:EG522127.1,
INSD:EL995562.1,INSD:EL016310.1,INSD:EL241872.1,
INSD:EH828553.1,INSD:CK120036.1,INSD:ES036017.1,
INSD:ES168109.1,INSD:DR288973.1,INSD:BP835633.2,
INSD:AU238408.1,INSD:EL998489.1,INSD:EL066189.1,
INSD:BE525979.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK117570.1,INSD:BX817600.1,INSD:BT005107.1"
/note="HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (HINT 2);
FUNCTIONS IN: protein kinase C binding, zinc ion binding,
catalytic activity; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Histidine triad-like motif
(InterPro:IPR011146), Histidine triad, conserved site
(InterPro:IPR019808), Histidine triad (HIT) protein
(InterPro:IPR001310), Histidine triad motif
(InterPro:IPR011151); BEST Arabidopsis thaliana protein
match is: HIS triad family protein 3 (TAIR:AT3G56490.1);
Has 8225 Blast hits to 8223 proteins in 2654 species:
Archae - 159; Bacteria - 5014; Metazoa - 405; Fungi - 167;
Plants - 130; Viruses - 0; Other Eukaryotes - 2350
(source: NCBI BLink)."
/codon_start=1
/product="HISTIDINE TRIAD NUCLEOTIDE-BINDING 2"
/protein_id="NP_174401.1"
/db_xref="Araport:AT1G31160"
/db_xref="GeneID:840001"
/db_xref="TAIR:AT1G31160"
/translation="MAVTSSSMLLLRNFSTVGRVAQSVRVTSRIFFSTGELIRVLPYT
RSKRLICSTRAAHNEEAAAKAAASVADTGAPTIFDKIIAKEIPSDIVYEDENVLAFRD
INPQAPVHVLVIPKLRDGLTSLGKAEPRHVEVLGQLLHASKIVAEKEGILDGFRVVIN
NGVEACQSVYHLHLHVLGGRQMKWPPG"
ORIGIN
1 aaagagttaa aacgacgacg tatgttgata atctctaaat gacgtcgttt gattgaaaat
61 gtcgtaagaa aaatcgatcg aaacggttag cgaatcgaag cagagagagc ttcaatggct
121 gtcacttctt cctctatgct gctgcttcgg aacttctcta cggtgggaag agttgctcaa
181 tctgttcgtg tgacttcgag gatcttcttc tccaccggag aattgattag ggttcttcct
241 tatactcgtt ctaaaagatt gatctgttct actcgtgctg ctcataatga agaagccgcc
301 gcgaaagctg cggcttctgt tgctgacacc ggagctccga ccatatttga caagattata
361 gcaaaagaga ttccctcaga tattgtctat gaagatgaaa acgttttggc attcagagac
421 attaaccctc aggctcctgt tcatgttttg gtcattccca agttgagaga tggcttgacc
481 tcgcttggca aggctgaacc aagacacgta gaggttcttg gccaacttct acatgcatcg
541 aagattgttg ctgagaaaga aggaatcctt gatgggttcc gtgtggttat caacaacggt
601 gttgaagcct gccaatctgt ttaccatctt catctgcacg tcctcggagg ccgacagatg
661 aaatggccac ccggttaaga agaaagattc atgtcaaccc aaagccaacg tgctccaaaa
721 ttgtcaacta caatcctttc ttatatggtt tatgagtttt taccactatc ggattttatc
781 cagttgtgaa ttcctagaga ttagatagct tccatttcca attgttatcg aattcttttt
841 cttttttcat tgttagaaat aaatactaac aatttatatg atatgagtag tttctctcct
901 acaattatcg tatatggatc tgtacatatt aatgagagtt aggagaacac aaca
//