LOCUS NM_102555 2641 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana RNA helicase family protein (AT1G27900), mRNA.
ACCESSION NM_102555
VERSION NM_102555.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2641)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 2641)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2641)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2641)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 2641)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_102555.2.
FEATURES Location/Qualifiers
source 1..2641
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..2641
/locus_tag="AT1G27900"
/gene_synonym="F13K9.28; F13K9_28"
/db_xref="Araport:AT1G27900"
/db_xref="GeneID:839683"
/db_xref="TAIR:AT1G27900"
CDS 284..2386
/locus_tag="AT1G27900"
/gene_synonym="F13K9.28; F13K9_28"
/inference="Similar to RNA sequence,
EST:INSD:EH873444.1,INSD:AI993325.1,INSD:BX840304.1,
INSD:DR383886.1,INSD:EL254214.1,INSD:BP655107.1,
INSD:EH897125.1,INSD:ES048052.1,INSD:AA713018.1,
INSD:T75871.1,INSD:BP643806.1,INSD:BP650554.1,
INSD:EL227095.1,INSD:AV821942.1,INSD:EH982207.1,
INSD:BP627810.1,INSD:AA404928.1,INSD:BP868506.1,
INSD:BX840408.1,INSD:ES086039.1,INSD:BU635423.1,
INSD:DR369306.1,INSD:AV529741.1,INSD:EL233752.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY054692.1,INSD:AY128718.1,INSD:BX814910.1"
/note="RNA helicase family protein; FUNCTIONS IN: in 7
functions; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Helicase-associated domain
(InterPro:IPR007502), ATPase, AAA+ type, core
(InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box
type, N-terminal (InterPro:IPR011545), Domain of unknown
function DUF1605 (InterPro:IPR011709), DNA/RNA helicase,
ATP-dependent, DEAH-box type, conserved site
(InterPro:IPR002464), DEAD-like helicase, N-terminal
(InterPro:IPR014001), DNA/RNA helicase, C-terminal
(InterPro:IPR001650), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
thaliana protein match is: ATP-dependent RNA helicase,
putative (TAIR:AT3G26560.1); Has 10760 Blast hits to 9882
proteins in 1732 species: Archae - 26; Bacteria - 3503;
Metazoa - 2392; Fungi - 1270; Plants - 841; Viruses -
1056; Other Eukaryotes - 1672 (source: NCBI BLink)."
/codon_start=1
/product="RNA helicase family protein"
/protein_id="NP_564296.1"
/db_xref="Araport:AT1G27900"
/db_xref="GeneID:839683"
/db_xref="TAIR:AT1G27900"
/translation="MANLPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRH
GYTKSGVIAITQPRRVAAVSVARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTD
GVLLRESLSNPMLDDYSVIILDEAHERSLNTDILLGLVKRLVRIRASNFKVLITSATL
DGEKVSEFFSGCPVLNVPGKLYPVEILYSKERPVSYIESSLKVAIDIHVREPEGDILI
FMTGQDDIEKLVSRLEEKVRSLAEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRF
IVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQISKVQANQRAGRAGR
TRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPDIDILKFDFLDAP
SSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTLIEANETGCLSQALT
VVAMLSAETTLLPARSKPSEKKRKHDEDSNLPNGSGYGDHIQLLQIFESWDRTNYDPV
WCKENGMQVRGMVFVKDVRRQLCQIMQKISKDRLEVGADGRKSSSRDDYRKLRKALCV
GNANQIAERMLRHNGYRTLSFQSQLVQVHPSSVLSADNDGMMPNYVVYHELISTTRPF
MRNVCAVDMAWVAPIKRKIEKLNVRKLSGGPAPSFKVPEEKTELSKNNAETPAVSENV
ESRIEAARERFLARKGQK"
ORIGIN
1 tgatttttct cgctttattt tctatttttc gattttcata taatatacag agaagatttt
61 gaacggaaaa ggtttaggaa aaatgtgttg ttgatttgag atttctcgaa gtgttggtga
121 gcgattaggg ttctgtattg tgaatctatc gcgtcgttcg tcggagaatg aatttcgttg
181 tacagagatt ttagactgaa cctaagcaga acttgcaggt tacagtttcc tttcgtcgat
241 cgattgctga acttgatagg ttctttgagt gtttctctgc gatatggcga accttccgat
301 ccttcaattt gaagagaaga tcgtggaaac agtggagaag aattcagtgg tagttataat
361 tggagaaacc ggttctggga agagtactca gctctctcag atacttcatc gacatggtta
421 cacaaagtcc ggcgtcatcg ccatcactca gccccgacgt gttgctgccg tttccgttgc
481 caggcgagtc gcacaggagc ttgatgtacc tcttggagaa gatgttggtt atgcgatacg
541 tttcgaggat agaactacga gtaaaacacg gattaagtac ctcacagatg gagttctact
601 tcgtgagagt ctgtccaatc caatgcttga tgattattct gttatcatat tggatgaggc
661 tcacgagagg agtttaaaca cggatattct gttgggtcta gtgaaacggt tggttagaat
721 ccgtgcatcc aactttaaag ttcttataac ctctgcaaca cttgacggcg aaaaggtttc
781 tgaattcttt tcgggctgcc ctgtgctgaa tgtacctgga aaattatacc ccgtggaaat
841 attatacagc aaagagcgtc ctgtcagcta tattgagtca tctctgaaag tagctattga
901 tatacatgtt cgtgagccag aaggtgatat tttaatcttc atgaccggac aggatgatat
961 tgaaaaatta gtatcaaggc tagaggaaaa agtacgaagc ttagcagaag gatcctgtat
1021 ggatgctatt atttatcctc ttcacggttc tttgccccct gaaatgcagg ttcgtgtctt
1081 tagtcctcct cctccaaact gccgcagatt tattgtttct accaatattg ctgaaacttc
1141 ccttactgtg gacggggttg tgtatgtaat tgattccggg tatgtgaagc aaagacaata
1201 taacccatca agtggaatgt tttctcttga tgttattcaa attagcaaag tgcaagctaa
1261 ccaacgtgct ggacgtgctg gccgaacaag accggggaaa tgttatcgtt tatacccatt
1321 ggcagtctac cgagatgact tccttgatgc aactattcct gaaatccaac gaacttctct
1381 tgccgggagt gttctatact tgaaatcatt ggatcttcct gatattgaca ttctcaagtt
1441 cgattttctt gatgctcctt catctgagtc attagaagat gcgttgaagc aattgtattt
1501 cattgatgca attgatgaga atggagcaat aacaaggatt ggacggacaa tgtctgatct
1561 tccactagaa ccatcattgt caagaacatt gatagaagcg aatgaaaccg gttgcttatc
1621 tcaagctcta acagttgttg ctatgctgtc agcagagaca actcttcttc ctgctaggag
1681 taaacccagt gaaaagaaga ggaaacatga tgaagattct aatcttccta atggatccgg
1741 atatggtgat cacattcaac tgctacagat tttcgaatct tgggaccgta ctaattatga
1801 tcctgtatgg tgcaaagaga acggcatgca ggtgcgaggg atggtgtttg tcaaagatgt
1861 tagaagacag ttatgtcaga ttatgcagaa aatatccaaa gatcgattgg aagttggggc
1921 agatggtagg aagagttcaa gccgagacga ctacaggaag ttgaggaaag ctctatgcgt
1981 tggtaatgca aaccaaattg ctgagagaat gcttcgtcac aatggatacc ggactcttag
2041 tttccagtcc cagctagtcc aggtgcatcc atcatctgta ttgagtgccg acaatgacgg
2101 aatgatgcct aactacgtag tgtaccatga gctgatttcc accacacgtc cgttcatgcg
2161 gaatgtttgt gcagtagata tggcatgggt ggctcccatc aaaagaaaga tcgagaaatt
2221 aaatgtcaga aaattgagcg gtggaccggc tccctctttc aaagtacctg aggagaagac
2281 ggagttgtct aaaaacaatg cagaaacacc tgcagtttct gaaaatgttg agagtcggat
2341 tgaagcagcc agagaacgct ttcttgctcg taaaggacag aaataaattt gatgtctcaa
2401 acataaatac aagattcaac tagccctata aagaatagaa aagagaagct ttctgtagaa
2461 gatttgttat tagagacaat tttcaaattt tgtatgttct gttttttttt tttttggctc
2521 aacttaaact tttctttatt ctcattcgac atgagtttta aatttttaac ccaatttggt
2581 atgttcttag tattatgttt aaaagatgat aatgtttaca cgaaaaaaga aaagaaaaag
2641 g
//