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Arabidopsis thaliana RNA helicase family protein (AT1G27900), mRNA

NCBI Reference Sequence: NM_102555.3

FASTA Graphics 

LOCUS       NM_102555               2641 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RNA helicase family protein (AT1G27900), mRNA.
ACCESSION   NM_102555
VERSION     NM_102555.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 2641)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2641)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2641)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 2641)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_102555.2.
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..2641
                     /locus_tag="AT1G27900"
                     /gene_synonym="F13K9.28; F13K9_28"
                     /db_xref="Araport:AT1G27900"
                     /db_xref="GeneID:839683"
                     /db_xref="TAIR:AT1G27900"
     CDS             284..2386
                     /locus_tag="AT1G27900"
                     /gene_synonym="F13K9.28; F13K9_28"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH873444.1,INSD:AI993325.1,INSD:BX840304.1,
                     INSD:DR383886.1,INSD:EL254214.1,INSD:BP655107.1,
                     INSD:EH897125.1,INSD:ES048052.1,INSD:AA713018.1,
                     INSD:T75871.1,INSD:BP643806.1,INSD:BP650554.1,
                     INSD:EL227095.1,INSD:AV821942.1,INSD:EH982207.1,
                     INSD:BP627810.1,INSD:AA404928.1,INSD:BP868506.1,
                     INSD:BX840408.1,INSD:ES086039.1,INSD:BU635423.1,
                     INSD:DR369306.1,INSD:AV529741.1,INSD:EL233752.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY054692.1,INSD:AY128718.1,INSD:BX814910.1"
                     /note="RNA helicase family protein; FUNCTIONS IN: in 7
                     functions; INVOLVED IN: biological_process unknown;
                     LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
                     plant structures; EXPRESSED DURING: 13 growth stages;
                     CONTAINS InterPro DOMAIN/s: Helicase-associated domain
                     (InterPro:IPR007502), ATPase, AAA+ type, core
                     (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box
                     type, N-terminal (InterPro:IPR011545), Domain of unknown
                     function DUF1605 (InterPro:IPR011709), DNA/RNA helicase,
                     ATP-dependent, DEAH-box type, conserved site
                     (InterPro:IPR002464), DEAD-like helicase, N-terminal
                     (InterPro:IPR014001), DNA/RNA helicase, C-terminal
                     (InterPro:IPR001650), Helicase, superfamily 1/2,
                     ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
                     thaliana protein match is: ATP-dependent RNA helicase,
                     putative (TAIR:AT3G26560.1); Has 10760 Blast hits to 9882
                     proteins in 1732 species: Archae - 26; Bacteria - 3503;
                     Metazoa - 2392; Fungi - 1270; Plants - 841; Viruses -
                     1056; Other Eukaryotes - 1672 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RNA helicase family protein"
                     /protein_id="NP_564296.1"
                     /db_xref="Araport:AT1G27900"
                     /db_xref="GeneID:839683"
                     /db_xref="TAIR:AT1G27900"
                     /translation="MANLPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRH
                     GYTKSGVIAITQPRRVAAVSVARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTD
                     GVLLRESLSNPMLDDYSVIILDEAHERSLNTDILLGLVKRLVRIRASNFKVLITSATL
                     DGEKVSEFFSGCPVLNVPGKLYPVEILYSKERPVSYIESSLKVAIDIHVREPEGDILI
                     FMTGQDDIEKLVSRLEEKVRSLAEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRF
                     IVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQISKVQANQRAGRAGR
                     TRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPDIDILKFDFLDAP
                     SSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTLIEANETGCLSQALT
                     VVAMLSAETTLLPARSKPSEKKRKHDEDSNLPNGSGYGDHIQLLQIFESWDRTNYDPV
                     WCKENGMQVRGMVFVKDVRRQLCQIMQKISKDRLEVGADGRKSSSRDDYRKLRKALCV
                     GNANQIAERMLRHNGYRTLSFQSQLVQVHPSSVLSADNDGMMPNYVVYHELISTTRPF
                     MRNVCAVDMAWVAPIKRKIEKLNVRKLSGGPAPSFKVPEEKTELSKNNAETPAVSENV
                     ESRIEAARERFLARKGQK"
ORIGIN      
        1 tgatttttct cgctttattt tctatttttc gattttcata taatatacag agaagatttt
       61 gaacggaaaa ggtttaggaa aaatgtgttg ttgatttgag atttctcgaa gtgttggtga
      121 gcgattaggg ttctgtattg tgaatctatc gcgtcgttcg tcggagaatg aatttcgttg
      181 tacagagatt ttagactgaa cctaagcaga acttgcaggt tacagtttcc tttcgtcgat
      241 cgattgctga acttgatagg ttctttgagt gtttctctgc gatatggcga accttccgat
      301 ccttcaattt gaagagaaga tcgtggaaac agtggagaag aattcagtgg tagttataat
      361 tggagaaacc ggttctggga agagtactca gctctctcag atacttcatc gacatggtta
      421 cacaaagtcc ggcgtcatcg ccatcactca gccccgacgt gttgctgccg tttccgttgc
      481 caggcgagtc gcacaggagc ttgatgtacc tcttggagaa gatgttggtt atgcgatacg
      541 tttcgaggat agaactacga gtaaaacacg gattaagtac ctcacagatg gagttctact
      601 tcgtgagagt ctgtccaatc caatgcttga tgattattct gttatcatat tggatgaggc
      661 tcacgagagg agtttaaaca cggatattct gttgggtcta gtgaaacggt tggttagaat
      721 ccgtgcatcc aactttaaag ttcttataac ctctgcaaca cttgacggcg aaaaggtttc
      781 tgaattcttt tcgggctgcc ctgtgctgaa tgtacctgga aaattatacc ccgtggaaat
      841 attatacagc aaagagcgtc ctgtcagcta tattgagtca tctctgaaag tagctattga
      901 tatacatgtt cgtgagccag aaggtgatat tttaatcttc atgaccggac aggatgatat
      961 tgaaaaatta gtatcaaggc tagaggaaaa agtacgaagc ttagcagaag gatcctgtat
     1021 ggatgctatt atttatcctc ttcacggttc tttgccccct gaaatgcagg ttcgtgtctt
     1081 tagtcctcct cctccaaact gccgcagatt tattgtttct accaatattg ctgaaacttc
     1141 ccttactgtg gacggggttg tgtatgtaat tgattccggg tatgtgaagc aaagacaata
     1201 taacccatca agtggaatgt tttctcttga tgttattcaa attagcaaag tgcaagctaa
     1261 ccaacgtgct ggacgtgctg gccgaacaag accggggaaa tgttatcgtt tatacccatt
     1321 ggcagtctac cgagatgact tccttgatgc aactattcct gaaatccaac gaacttctct
     1381 tgccgggagt gttctatact tgaaatcatt ggatcttcct gatattgaca ttctcaagtt
     1441 cgattttctt gatgctcctt catctgagtc attagaagat gcgttgaagc aattgtattt
     1501 cattgatgca attgatgaga atggagcaat aacaaggatt ggacggacaa tgtctgatct
     1561 tccactagaa ccatcattgt caagaacatt gatagaagcg aatgaaaccg gttgcttatc
     1621 tcaagctcta acagttgttg ctatgctgtc agcagagaca actcttcttc ctgctaggag
     1681 taaacccagt gaaaagaaga ggaaacatga tgaagattct aatcttccta atggatccgg
     1741 atatggtgat cacattcaac tgctacagat tttcgaatct tgggaccgta ctaattatga
     1801 tcctgtatgg tgcaaagaga acggcatgca ggtgcgaggg atggtgtttg tcaaagatgt
     1861 tagaagacag ttatgtcaga ttatgcagaa aatatccaaa gatcgattgg aagttggggc
     1921 agatggtagg aagagttcaa gccgagacga ctacaggaag ttgaggaaag ctctatgcgt
     1981 tggtaatgca aaccaaattg ctgagagaat gcttcgtcac aatggatacc ggactcttag
     2041 tttccagtcc cagctagtcc aggtgcatcc atcatctgta ttgagtgccg acaatgacgg
     2101 aatgatgcct aactacgtag tgtaccatga gctgatttcc accacacgtc cgttcatgcg
     2161 gaatgtttgt gcagtagata tggcatgggt ggctcccatc aaaagaaaga tcgagaaatt
     2221 aaatgtcaga aaattgagcg gtggaccggc tccctctttc aaagtacctg aggagaagac
     2281 ggagttgtct aaaaacaatg cagaaacacc tgcagtttct gaaaatgttg agagtcggat
     2341 tgaagcagcc agagaacgct ttcttgctcg taaaggacag aaataaattt gatgtctcaa
     2401 acataaatac aagattcaac tagccctata aagaatagaa aagagaagct ttctgtagaa
     2461 gatttgttat tagagacaat tttcaaattt tgtatgttct gttttttttt tttttggctc
     2521 aacttaaact tttctttatt ctcattcgac atgagtttta aatttttaac ccaatttggt
     2581 atgttcttag tattatgttt aaaagatgat aatgtttaca cgaaaaaaga aaagaaaaag
     2641 g
//
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