LOCUS NM_101685 4607 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana ketose-bisphosphate aldolase class-II family
protein (AT1G18270), mRNA.
ACCESSION NM_101685
VERSION NM_101685.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 4607)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 4607)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4607)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 4607)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 4607)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_101685.4.
FEATURES Location/Qualifiers
source 1..4607
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..4607
/locus_tag="AT1G18270"
/gene_synonym="T10O22.24; T10O22_24"
/db_xref="Araport:AT1G18270"
/db_xref="GeneID:838407"
/db_xref="TAIR:AT1G18270"
CDS 222..4343
/locus_tag="AT1G18270"
/gene_synonym="T10O22.24; T10O22_24"
/inference="Similar to RNA sequence,
EST:INSD:BP808376.1,INSD:ES215196.1,INSD:BP808806.2,
INSD:ES166082.1,INSD:BP600072.1,INSD:EL018988.1,
INSD:BP599060.1,INSD:ES173533.1,INSD:AV546047.1,
INSD:BP807152.1,INSD:EH859107.1,INSD:BP603238.1,
INSD:BP653510.1,INSD:EG499573.1,INSD:ES008273.1,
INSD:BP616365.1,INSD:BP603048.1,INSD:AV554899.1,
INSD:BG459272.1,INSD:AV546108.1,INSD:BP562515.2,
INSD:ES149813.1,INSD:BP613751.1,INSD:AI993103.1,
INSD:BP602219.1,INSD:BE521620.1,INSD:T44854.1,
INSD:CD568314.1,INSD:ES013025.1,INSD:BP602473.1,
INSD:BP621153.1,INSD:ES170322.1,INSD:ES160208.1,
INSD:ES204528.1,INSD:AV548485.1,INSD:BP600280.1,
INSD:BP804958.1,INSD:EH803824.1,INSD:ES178750.1,
INSD:BP615665.1,INSD:BP613602.1,INSD:BE521619.1,
INSD:BP601885.1,INSD:BP601107.1,INSD:ES206672.1,
INSD:BP811175.1,INSD:EH939339.1,INSD:AA605444.1,
INSD:BP613926.1,INSD:BP605811.1,INSD:BP615564.1,
INSD:BP605839.1,INSD:AV816160.1,INSD:BP606693.1,
INSD:CD530465.1,INSD:Z25571.1,INSD:BP809818.2,
INSD:AV547140.1,INSD:BE525735.1,INSD:BP810032.1"
/note="ketose-bisphosphate aldolase class-II family
protein; FUNCTIONS IN: in 8 functions; INVOLVED IN:
oxidation reduction, pentose-phosphate shunt, valine
metabolic process, glycolysis, metabolic process; LOCATED
IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Aldolase-type TIM barrel (InterPro:IPR013785),
6-phosphogluconate dehydrogenase, NAD-binding
(InterPro:IPR006115), 6-phosphogluconate dehydrogenase,
C-terminal-like (InterPro:IPR008927), Dehydrogenase,
multihelical (InterPro:IPR013328), Ketose-bisphosphate
aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid
dehydrogenase/reductase (InterPro:IPR015815), Protein of
unknown function, DUF1537 (InterPro:IPR010737),
NAD(P)-binding domain (InterPro:IPR016040),
3-hydroxyisobutyrate dehydrogenase-related, conserved site
(InterPro:IPR002204); BEST Arabidopsis thaliana protein
match is: 6-phosphogluconate dehydrogenase family protein
(TAIR:AT4G20930.1); Has 34046 Blast hits to 22505 proteins
in 2700 species: Archae - 264; Bacteria - 21742; Metazoa -
568; Fungi - 820; Plants - 423; Viruses - 1; Other
Eukaryotes - 10228 (source: NCBI BLink)."
/codon_start=1
/product="ketose-bisphosphate aldolase class-II family
protein"
/protein_id="NP_173263.2"
/db_xref="Araport:AT1G18270"
/db_xref="GeneID:838407"
/db_xref="TAIR:AT1G18270"
/translation="MSGVVGFVGLDSFSFELASSLLRSGFKVQAFEISTELVEKFIEL
GGHKCDSPADVGKAAAAVVVVLSHPDQIQDVIFGDEGVMKGLQKDAVLLLSSTISTLQ
LQKLEKQLTEKREQIFVVDAYVLKGMSELLDGKLMIIASGRSDSITRAQPYLTAMCQN
LYTFEGEIGAGSKVKMVNELLEGIHLVAAVEAISLGSQAGVHPWILYDIISNAAGNSW
IYKNHIPLLLKDDIEGRFLDVLSQNLAIVEDKAKSLPFPVPLLAVARQQLISGISQMQ
GDDTATSLAKISEKVLGVGILEAANRELYKPEDLAKEITTQAKPVNRIGFIGLGAMGF
GMAAHLLKSNFSVCGYDVYKPTLVRFENAGGLAANSPAEVTKDVDVLVIMVTNEVQAE
DVLYGHLGAVEAIPSGATVVLASTVSPAFVSQLERRLENEGKDLKLVDAPVSGGVKRA
AMGELTIMASGTDEALKSAGLVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASA
AEAMAFGARLGLNTRKLFNVISNSGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGI
VTREGSSRKVPLHISTVAHQLFLAGSAAGWGRIDDAGVVKVYETLAGIKVEGRLPVLK
KQDLLKSLPAEWPSDPTTDIHRLNMGNSKTLVVLDDDPTGTQTVHDVEVLTEWSVESI
SEQFRKKPACFFILTNSRSLSPEKASELIKDICSNLCAASKEVGNADYTIVLRGDSTL
RGHFPQEADAAVSILGEMDAWIICPFFLQGGRYTIDDVHYVADSDRLVPAGETEFAKD
ASFGYKSSNLREWVEEKTAGVIPANSVQSISIQLLRKGGPDAVCEFLCSLKKGSTCIV
NAASERDMAVFAAGMIQAELKGRSFLCRTAASFVSALIGIIPKDPVLPKDFESNKESS
GALIVVGSYVPKTTKQVEELQSQHNQNLRSIEISVEKVALKSSEVRDEEIRRAVEMAD
AFLRAGRETLIMSSRELITGKTSSESLDINSKVSSALVEVVSQISTRPRYILAKGGIT
SSDTATKALKARRALVIGQALAGVPVWKLGPESRHPGVPYIVFPGNVGNSTALAEVVK
SWSVVAGRSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEEENSPAILQVHPGAF
KQGGIPLVSCCISAAEQARVPISVHFDHGTTKHELLEALELGLDSVMVDGSHLSFTEN
LSYTKSITELARSKNIMVEAELGRLSGTEDGLTVEDYEAKLTNVNQAQEFMETGIDAL
AVCIGNVHGKYPKSGPNLKLDLLKELHALSSKKGVFLVLHGASGLSENLIKECIENGV
RKFNVNTEVRTAYMEALSSGKKTDIVDVMSATKAAMKAVIADKIRLFGSAGKA"
ORIGIN
1 tttttgatca aaaaagtttt gcttttggca gataagttaa aggctaaaag gctgttggat
61 atggacttcc acgtaagagc ctacacgatg taacgttaca ttaatctcaa tttgttaaat
121 tatagtatca tatatatata tatagagaga gacagagaga tgcatatgaa attggtttgt
181 tgactgtaaa ttacatcgga gaattgtagt gatcggagaa aatgagtggc gtggttgggt
241 ttgttggtct tgattctttc agcttcgaat tagcttcttc gcttcttcgt tctgggttta
301 aggttcaagc attcgagata agtacagaat tagtggagaa gttcattgaa ttgggaggac
361 acaaatgtga cagccctgca gatgttggga aagctgcagc agccgttgtg gttgtactat
421 cccaccctga ccaaattcaa gatgtcattt ttggtgatga gggtgttatg aaaggtctac
481 agaaggacgc tgtattgctt ttgtcttcga caatatcgac tttgcaactc cagaaactag
541 agaaacaact tacagagaaa agagagcaga tttttgtagt tgatgcctat gttttaaaag
601 ggatgtctga gcttcttgat ggaaaactaa tgataatagc atctggaagg tcagattcga
661 tcacaagagc acaaccctat cttactgcaa tgtgtcaaaa tctgtacacc tttgagggag
721 aaattggtgc tggaagtaaa gttaaaatgg tgaatgagtt gcttgagggc atacatcttg
781 ttgctgctgt ggaggctata tctttaggtt ctcaggcggg tgtgcatcca tggatacttt
841 atgacataat ttccaatgct gctggaaatt catggattta caagaatcat attccgttgt
901 tgctaaaaga tgacatagag ggtcgcttcc tcgatgttct ctctcagaat ctggccattg
961 ttgaagataa agccaaatcg ctcccatttc ctgtcccact tttggcagtt gcacgccaac
1021 aactaatctc tggaatatca cagatgcagg gagatgatac agctacttca ttggctaaga
1081 tctcggaaaa agtacttggt gttggcatat tagaagcagc caatagagaa ctttataagc
1141 cagaggattt ggccaaagaa attactactc aagcaaagcc tgtgaataga attggtttta
1201 ttggtcttgg agcaatgggt tttggcatgg cagcacacct gttgaaatca aatttttctg
1261 tctgtggtta tgacgtatac aagccaacac ttgtcagatt tgagaatgcc gggggattgg
1321 cggcaaattc tccagctgaa gtgacgaaag atgtagatgt tcttgtaatt atggtaacaa
1381 acgaggttca ggctgaggat gtcttgtatg gacatcttgg agcggttgaa gctataccat
1441 ctggagcaac tgttgtactt gcgtcaacag tatctcccgc gtttgttagc caacttgaaa
1501 ggcgtctaga aaatgaggga aaagacctaa agctagttga tgctcctgtg tctggtggtg
1561 tcaagagggc tgccatgggg gagcttacga taatggcttc aggtaccgat gaagcactta
1621 agtctgcggg acttgtgtta tcagcattaa gtgagaagct ctacgtgatt aaaggaggtt
1681 gtggggcagg aagtggtgta aaaatggtca atcaattgct tgcgggagtt catatcgcat
1741 cagctgccga ggcaatggca tttggagctc ggttaggtct gaatactcga aagctattca
1801 atgttatttc caacagcggt ggaacatctt ggatgtttga aaatcgtgtt ccgcacatgc
1861 tggataatga ttacacacca tactctgctc ttgatatttt tgtcaaggat ttgggaattg
1921 ttacccgaga aggttcatcc cgtaaagttc cactccatat atcaacagtg gcacaccagc
1981 tattcttagc cggctctgct gcgggctggg gacggataga tgatgctgga gtggtgaagg
2041 tttatgaaac ccttgctgga attaaagtcg aagggagact tcctgttctg aagaaacaag
2101 acctactgaa atctcttcca gctgaatggc cttcagaccc tacaactgac atacatagac
2161 taaatatggg aaactcgaag acattggttg ttcttgatga tgatccaact ggcacacaaa
2221 ctgttcatga cgtagaggtt ttaactgaat ggagtgttga atctatttct gagcagttta
2281 gaaaaaagcc tgcatgcttc ttcattttga caaattcaag gtccctgagc cctgagaagg
2341 ctagtgaatt gatcaaagac atctgttcca acctatgtgc tgcatcaaaa gaagttggca
2401 atgctgacta cacgattgtt ctgaggggtg attcaacatt acgtggtcat tttcctcagg
2461 aagcagatgc tgctgtctca atacttgggg aaatggatgc atggattatt tgccccttct
2521 tccttcaagg gggacgttat actattgatg atgtgcatta tgttgcggat tctgataggc
2581 tcgttcctgc aggagagaca gagtttgcca aagatgcatc ctttggatat aaatcctcaa
2641 atctccgtga gtgggttgag gagaaaacag ctggcgtcat tccggctaac agcgttcagt
2701 cgatctcaat tcagctttta agaaaaggtg gccctgatgc agtgtgtgag tttctgtgca
2761 gtttaaagaa ggggtctaca tgtattgtca acgccgctag tgaaagagac atggctgtat
2821 ttgcagccgg gatgatccag gcagaactga aagggagatc ctttttatgc cgcactgctg
2881 ctagctttgt gtctgctcta atagggatta ttccaaaaga tcctgtgttg ccaaaagatt
2941 tcgaatctaa caaagaaagc agtggtgcac taatagttgt aggctcatat gtcccgaaaa
3001 caacaaagca ggttgaagaa cttcaatcac aacataacca gaatttaagg agcatcgaga
3061 tctctgtaga aaaagttgct ctcaagtcat ctgaagtgag agatgaagaa atcagaagag
3121 cagttgagat ggccgatgct ttccttcggg ctggcaggga gactctaatt atgagcagtc
3181 gtgaactcat cacgggaaaa acatcttcgg aaagtcttga tattaacagc aaagtgagct
3241 ccgctctggt tgaagtagtg agccagatat cgaccagacc tcgttatatt cttgctaagg
3301 gtggaattac gtcatcagac acagcaacga aagccctgaa agcacgacgt gcacttgtga
3361 ttggtcaagc ccttgctggt gttccagtat ggaagttagg tccagaaagt agacatccag
3421 gggtccccta cattgttttc cctggtaatg ttggtaacag cacagcgctt gcagaagttg
3481 tgaagtcttg gtcagtggta gcaggacggt cgacaaaaga gctgcttctg aatgcagaaa
3541 aaggtggata tgcagttgga gcatttaacg tgtataacct ggaaggaata gaagctgttg
3601 tagcggccgc agaggaagaa aatagtcctg ctatattgca ggtccatcca ggtgccttta
3661 aacaaggagg cattcctttg gtttcatgtt gcatctctgc agctgaacaa gccagggttc
3721 caatatccgt acactttgat catggaacta caaagcatga gctattagaa gctcttgagc
3781 taggactaga ttcagtgatg gtagatggtt ctcatctttc cttcacagaa aatttatcct
3841 acacgaaatc cataacagag ttggcccgtt ccaaaaacat tatggtggaa gctgaactag
3901 gccgactctc aggaacagag gatggcttga ctgttgaaga ctatgaagca aagctcacca
3961 acgttaacca ggctcaggaa tttatggaaa ctggtataga tgctttggct gtgtgtatag
4021 gaaatgtcca tggaaagtac cccaagtccg gtccaaacct caagcttgat ttacttaagg
4081 aactgcacgc cttaagctcg aagaaaggcg tttttcttgt tcttcacgga gcttctggtt
4141 tgtctgagaa ccttatcaag gaatgcattg agaatggagt gaggaagttc aacgtgaaca
4201 cagaagtaag aacggcttac atggaagctc ttagctctgg gaagaagacc gacattgttg
4261 atgtcatgtc cgcaacaaaa gcagccatga aagctgtgat cgcagataag atccgtctct
4321 ttggctctgc cggaaaagct tgagttgttg ataaaaaaat gtccgatcaa ttagttaagt
4381 acaattgtac atcacatcca aagaataaaa aaacaacaaa tattacatca catccaaaga
4441 agatgaatgc attgtatgca atgcagatgc agtgttgttg gaaataaaga aatcattttt
4501 agtactgttt aactgttttt tttttctttt tctcagtcaa atatataaat agaaactaaa
4561 tgggcaaata tttaattgtt gttatcggat aaaactacta attattc
//