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Arabidopsis thaliana ketose-bisphosphate aldolase class-II family protein (AT1G18270), mRNA

NCBI Reference Sequence: NM_101685.5

FASTA Graphics 

LOCUS       NM_101685               4607 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana ketose-bisphosphate aldolase class-II family
            protein (AT1G18270), mRNA.
ACCESSION   NM_101685
VERSION     NM_101685.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 4607)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 4607)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 4607)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 4607)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 4607)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_101685.4.
FEATURES             Location/Qualifiers
     source          1..4607
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..4607
                     /locus_tag="AT1G18270"
                     /gene_synonym="T10O22.24; T10O22_24"
                     /db_xref="Araport:AT1G18270"
                     /db_xref="GeneID:838407"
                     /db_xref="TAIR:AT1G18270"
     CDS             222..4343
                     /locus_tag="AT1G18270"
                     /gene_synonym="T10O22.24; T10O22_24"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP808376.1,INSD:ES215196.1,INSD:BP808806.2,
                     INSD:ES166082.1,INSD:BP600072.1,INSD:EL018988.1,
                     INSD:BP599060.1,INSD:ES173533.1,INSD:AV546047.1,
                     INSD:BP807152.1,INSD:EH859107.1,INSD:BP603238.1,
                     INSD:BP653510.1,INSD:EG499573.1,INSD:ES008273.1,
                     INSD:BP616365.1,INSD:BP603048.1,INSD:AV554899.1,
                     INSD:BG459272.1,INSD:AV546108.1,INSD:BP562515.2,
                     INSD:ES149813.1,INSD:BP613751.1,INSD:AI993103.1,
                     INSD:BP602219.1,INSD:BE521620.1,INSD:T44854.1,
                     INSD:CD568314.1,INSD:ES013025.1,INSD:BP602473.1,
                     INSD:BP621153.1,INSD:ES170322.1,INSD:ES160208.1,
                     INSD:ES204528.1,INSD:AV548485.1,INSD:BP600280.1,
                     INSD:BP804958.1,INSD:EH803824.1,INSD:ES178750.1,
                     INSD:BP615665.1,INSD:BP613602.1,INSD:BE521619.1,
                     INSD:BP601885.1,INSD:BP601107.1,INSD:ES206672.1,
                     INSD:BP811175.1,INSD:EH939339.1,INSD:AA605444.1,
                     INSD:BP613926.1,INSD:BP605811.1,INSD:BP615564.1,
                     INSD:BP605839.1,INSD:AV816160.1,INSD:BP606693.1,
                     INSD:CD530465.1,INSD:Z25571.1,INSD:BP809818.2,
                     INSD:AV547140.1,INSD:BE525735.1,INSD:BP810032.1"
                     /note="ketose-bisphosphate aldolase class-II family
                     protein; FUNCTIONS IN: in 8 functions; INVOLVED IN:
                     oxidation reduction, pentose-phosphate shunt, valine
                     metabolic process, glycolysis, metabolic process; LOCATED
                     IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED
                     DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
                     Aldolase-type TIM barrel (InterPro:IPR013785),
                     6-phosphogluconate dehydrogenase, NAD-binding
                     (InterPro:IPR006115), 6-phosphogluconate dehydrogenase,
                     C-terminal-like (InterPro:IPR008927), Dehydrogenase,
                     multihelical (InterPro:IPR013328), Ketose-bisphosphate
                     aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid
                     dehydrogenase/reductase (InterPro:IPR015815), Protein of
                     unknown function, DUF1537 (InterPro:IPR010737),
                     NAD(P)-binding domain (InterPro:IPR016040),
                     3-hydroxyisobutyrate dehydrogenase-related, conserved site
                     (InterPro:IPR002204); BEST Arabidopsis thaliana protein
                     match is: 6-phosphogluconate dehydrogenase family protein
                     (TAIR:AT4G20930.1); Has 34046 Blast hits to 22505 proteins
                     in 2700 species: Archae - 264; Bacteria - 21742; Metazoa -
                     568; Fungi - 820; Plants - 423; Viruses - 1; Other
                     Eukaryotes - 10228 (source: NCBI BLink)."
                     /codon_start=1
                     /product="ketose-bisphosphate aldolase class-II family
                     protein"
                     /protein_id="NP_173263.2"
                     /db_xref="Araport:AT1G18270"
                     /db_xref="GeneID:838407"
                     /db_xref="TAIR:AT1G18270"
                     /translation="MSGVVGFVGLDSFSFELASSLLRSGFKVQAFEISTELVEKFIEL
                     GGHKCDSPADVGKAAAAVVVVLSHPDQIQDVIFGDEGVMKGLQKDAVLLLSSTISTLQ
                     LQKLEKQLTEKREQIFVVDAYVLKGMSELLDGKLMIIASGRSDSITRAQPYLTAMCQN
                     LYTFEGEIGAGSKVKMVNELLEGIHLVAAVEAISLGSQAGVHPWILYDIISNAAGNSW
                     IYKNHIPLLLKDDIEGRFLDVLSQNLAIVEDKAKSLPFPVPLLAVARQQLISGISQMQ
                     GDDTATSLAKISEKVLGVGILEAANRELYKPEDLAKEITTQAKPVNRIGFIGLGAMGF
                     GMAAHLLKSNFSVCGYDVYKPTLVRFENAGGLAANSPAEVTKDVDVLVIMVTNEVQAE
                     DVLYGHLGAVEAIPSGATVVLASTVSPAFVSQLERRLENEGKDLKLVDAPVSGGVKRA
                     AMGELTIMASGTDEALKSAGLVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASA
                     AEAMAFGARLGLNTRKLFNVISNSGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGI
                     VTREGSSRKVPLHISTVAHQLFLAGSAAGWGRIDDAGVVKVYETLAGIKVEGRLPVLK
                     KQDLLKSLPAEWPSDPTTDIHRLNMGNSKTLVVLDDDPTGTQTVHDVEVLTEWSVESI
                     SEQFRKKPACFFILTNSRSLSPEKASELIKDICSNLCAASKEVGNADYTIVLRGDSTL
                     RGHFPQEADAAVSILGEMDAWIICPFFLQGGRYTIDDVHYVADSDRLVPAGETEFAKD
                     ASFGYKSSNLREWVEEKTAGVIPANSVQSISIQLLRKGGPDAVCEFLCSLKKGSTCIV
                     NAASERDMAVFAAGMIQAELKGRSFLCRTAASFVSALIGIIPKDPVLPKDFESNKESS
                     GALIVVGSYVPKTTKQVEELQSQHNQNLRSIEISVEKVALKSSEVRDEEIRRAVEMAD
                     AFLRAGRETLIMSSRELITGKTSSESLDINSKVSSALVEVVSQISTRPRYILAKGGIT
                     SSDTATKALKARRALVIGQALAGVPVWKLGPESRHPGVPYIVFPGNVGNSTALAEVVK
                     SWSVVAGRSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEEENSPAILQVHPGAF
                     KQGGIPLVSCCISAAEQARVPISVHFDHGTTKHELLEALELGLDSVMVDGSHLSFTEN
                     LSYTKSITELARSKNIMVEAELGRLSGTEDGLTVEDYEAKLTNVNQAQEFMETGIDAL
                     AVCIGNVHGKYPKSGPNLKLDLLKELHALSSKKGVFLVLHGASGLSENLIKECIENGV
                     RKFNVNTEVRTAYMEALSSGKKTDIVDVMSATKAAMKAVIADKIRLFGSAGKA"
ORIGIN      
        1 tttttgatca aaaaagtttt gcttttggca gataagttaa aggctaaaag gctgttggat
       61 atggacttcc acgtaagagc ctacacgatg taacgttaca ttaatctcaa tttgttaaat
      121 tatagtatca tatatatata tatagagaga gacagagaga tgcatatgaa attggtttgt
      181 tgactgtaaa ttacatcgga gaattgtagt gatcggagaa aatgagtggc gtggttgggt
      241 ttgttggtct tgattctttc agcttcgaat tagcttcttc gcttcttcgt tctgggttta
      301 aggttcaagc attcgagata agtacagaat tagtggagaa gttcattgaa ttgggaggac
      361 acaaatgtga cagccctgca gatgttggga aagctgcagc agccgttgtg gttgtactat
      421 cccaccctga ccaaattcaa gatgtcattt ttggtgatga gggtgttatg aaaggtctac
      481 agaaggacgc tgtattgctt ttgtcttcga caatatcgac tttgcaactc cagaaactag
      541 agaaacaact tacagagaaa agagagcaga tttttgtagt tgatgcctat gttttaaaag
      601 ggatgtctga gcttcttgat ggaaaactaa tgataatagc atctggaagg tcagattcga
      661 tcacaagagc acaaccctat cttactgcaa tgtgtcaaaa tctgtacacc tttgagggag
      721 aaattggtgc tggaagtaaa gttaaaatgg tgaatgagtt gcttgagggc atacatcttg
      781 ttgctgctgt ggaggctata tctttaggtt ctcaggcggg tgtgcatcca tggatacttt
      841 atgacataat ttccaatgct gctggaaatt catggattta caagaatcat attccgttgt
      901 tgctaaaaga tgacatagag ggtcgcttcc tcgatgttct ctctcagaat ctggccattg
      961 ttgaagataa agccaaatcg ctcccatttc ctgtcccact tttggcagtt gcacgccaac
     1021 aactaatctc tggaatatca cagatgcagg gagatgatac agctacttca ttggctaaga
     1081 tctcggaaaa agtacttggt gttggcatat tagaagcagc caatagagaa ctttataagc
     1141 cagaggattt ggccaaagaa attactactc aagcaaagcc tgtgaataga attggtttta
     1201 ttggtcttgg agcaatgggt tttggcatgg cagcacacct gttgaaatca aatttttctg
     1261 tctgtggtta tgacgtatac aagccaacac ttgtcagatt tgagaatgcc gggggattgg
     1321 cggcaaattc tccagctgaa gtgacgaaag atgtagatgt tcttgtaatt atggtaacaa
     1381 acgaggttca ggctgaggat gtcttgtatg gacatcttgg agcggttgaa gctataccat
     1441 ctggagcaac tgttgtactt gcgtcaacag tatctcccgc gtttgttagc caacttgaaa
     1501 ggcgtctaga aaatgaggga aaagacctaa agctagttga tgctcctgtg tctggtggtg
     1561 tcaagagggc tgccatgggg gagcttacga taatggcttc aggtaccgat gaagcactta
     1621 agtctgcggg acttgtgtta tcagcattaa gtgagaagct ctacgtgatt aaaggaggtt
     1681 gtggggcagg aagtggtgta aaaatggtca atcaattgct tgcgggagtt catatcgcat
     1741 cagctgccga ggcaatggca tttggagctc ggttaggtct gaatactcga aagctattca
     1801 atgttatttc caacagcggt ggaacatctt ggatgtttga aaatcgtgtt ccgcacatgc
     1861 tggataatga ttacacacca tactctgctc ttgatatttt tgtcaaggat ttgggaattg
     1921 ttacccgaga aggttcatcc cgtaaagttc cactccatat atcaacagtg gcacaccagc
     1981 tattcttagc cggctctgct gcgggctggg gacggataga tgatgctgga gtggtgaagg
     2041 tttatgaaac ccttgctgga attaaagtcg aagggagact tcctgttctg aagaaacaag
     2101 acctactgaa atctcttcca gctgaatggc cttcagaccc tacaactgac atacatagac
     2161 taaatatggg aaactcgaag acattggttg ttcttgatga tgatccaact ggcacacaaa
     2221 ctgttcatga cgtagaggtt ttaactgaat ggagtgttga atctatttct gagcagttta
     2281 gaaaaaagcc tgcatgcttc ttcattttga caaattcaag gtccctgagc cctgagaagg
     2341 ctagtgaatt gatcaaagac atctgttcca acctatgtgc tgcatcaaaa gaagttggca
     2401 atgctgacta cacgattgtt ctgaggggtg attcaacatt acgtggtcat tttcctcagg
     2461 aagcagatgc tgctgtctca atacttgggg aaatggatgc atggattatt tgccccttct
     2521 tccttcaagg gggacgttat actattgatg atgtgcatta tgttgcggat tctgataggc
     2581 tcgttcctgc aggagagaca gagtttgcca aagatgcatc ctttggatat aaatcctcaa
     2641 atctccgtga gtgggttgag gagaaaacag ctggcgtcat tccggctaac agcgttcagt
     2701 cgatctcaat tcagctttta agaaaaggtg gccctgatgc agtgtgtgag tttctgtgca
     2761 gtttaaagaa ggggtctaca tgtattgtca acgccgctag tgaaagagac atggctgtat
     2821 ttgcagccgg gatgatccag gcagaactga aagggagatc ctttttatgc cgcactgctg
     2881 ctagctttgt gtctgctcta atagggatta ttccaaaaga tcctgtgttg ccaaaagatt
     2941 tcgaatctaa caaagaaagc agtggtgcac taatagttgt aggctcatat gtcccgaaaa
     3001 caacaaagca ggttgaagaa cttcaatcac aacataacca gaatttaagg agcatcgaga
     3061 tctctgtaga aaaagttgct ctcaagtcat ctgaagtgag agatgaagaa atcagaagag
     3121 cagttgagat ggccgatgct ttccttcggg ctggcaggga gactctaatt atgagcagtc
     3181 gtgaactcat cacgggaaaa acatcttcgg aaagtcttga tattaacagc aaagtgagct
     3241 ccgctctggt tgaagtagtg agccagatat cgaccagacc tcgttatatt cttgctaagg
     3301 gtggaattac gtcatcagac acagcaacga aagccctgaa agcacgacgt gcacttgtga
     3361 ttggtcaagc ccttgctggt gttccagtat ggaagttagg tccagaaagt agacatccag
     3421 gggtccccta cattgttttc cctggtaatg ttggtaacag cacagcgctt gcagaagttg
     3481 tgaagtcttg gtcagtggta gcaggacggt cgacaaaaga gctgcttctg aatgcagaaa
     3541 aaggtggata tgcagttgga gcatttaacg tgtataacct ggaaggaata gaagctgttg
     3601 tagcggccgc agaggaagaa aatagtcctg ctatattgca ggtccatcca ggtgccttta
     3661 aacaaggagg cattcctttg gtttcatgtt gcatctctgc agctgaacaa gccagggttc
     3721 caatatccgt acactttgat catggaacta caaagcatga gctattagaa gctcttgagc
     3781 taggactaga ttcagtgatg gtagatggtt ctcatctttc cttcacagaa aatttatcct
     3841 acacgaaatc cataacagag ttggcccgtt ccaaaaacat tatggtggaa gctgaactag
     3901 gccgactctc aggaacagag gatggcttga ctgttgaaga ctatgaagca aagctcacca
     3961 acgttaacca ggctcaggaa tttatggaaa ctggtataga tgctttggct gtgtgtatag
     4021 gaaatgtcca tggaaagtac cccaagtccg gtccaaacct caagcttgat ttacttaagg
     4081 aactgcacgc cttaagctcg aagaaaggcg tttttcttgt tcttcacgga gcttctggtt
     4141 tgtctgagaa ccttatcaag gaatgcattg agaatggagt gaggaagttc aacgtgaaca
     4201 cagaagtaag aacggcttac atggaagctc ttagctctgg gaagaagacc gacattgttg
     4261 atgtcatgtc cgcaacaaaa gcagccatga aagctgtgat cgcagataag atccgtctct
     4321 ttggctctgc cggaaaagct tgagttgttg ataaaaaaat gtccgatcaa ttagttaagt
     4381 acaattgtac atcacatcca aagaataaaa aaacaacaaa tattacatca catccaaaga
     4441 agatgaatgc attgtatgca atgcagatgc agtgttgttg gaaataaaga aatcattttt
     4501 agtactgttt aactgttttt tttttctttt tctcagtcaa atatataaat agaaactaaa
     4561 tgggcaaata tttaattgtt gttatcggat aaaactacta attattc
//
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