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Caenorhabditis elegans C-type lectin domain-containing protein (clec-123), mRNA

NCBI Reference Sequence: NM_062049.4

FASTA Graphics 

LOCUS       NM_062049               1841 bp    mRNA    linear   INV 04-DEC-2024
DEFINITION  Caenorhabditis elegans C-type lectin domain-containing protein
            (clec-123), mRNA.
ACCESSION   NM_062049
VERSION     NM_062049.4
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 1841)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1841)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2024) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 1841)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003280).
            
            On Sep 4, 2019 this sequence version replaced NM_062049.3.
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="II"
     gene            1..1841
                     /gene="clec-123"
                     /locus_tag="CELE_Y25C1A.1"
                     /db_xref="GeneID:173658"
                     /db_xref="WormBase:WBGene00021288"
     CDS             57..1793
                     /gene="clec-123"
                     /locus_tag="CELE_Y25C1A.1"
                     /standard_name="Y25C1A.1"
                     /note="Confirmed by transcript evidence"
                     /codon_start=1
                     /product="C-type lectin domain-containing protein"
                     /protein_id="NP_494450.1"
                     /db_xref="GeneID:173658"
                     /db_xref="WormBase:WBGene00021288"
                     /translation="MSLMFALFLGILCSQKELYAQQITGGLIVDSGLQKACAQAGGVF
                     RPRTDAQSVTGDICEMSFSVVTSDEADATNFCELYAPWRLRSVRIEKDVAGFTRTVCV
                     VEATFTCGAGWIQMFGHCFRRLDKFSRHNQTEAKNICANLDGHKGSIAYLHHRYIVGV
                     WKNFFKGISQIWVDGSETWDQYIVKTGSVDGRALALAFTGDTFDFSVMPNSLISIDPN
                     LKLEVLCQYKPDLTPAEVNYLGRRYSEIYYPGVHVSDGVLIRSASHYTRSKTNLEVCK
                     KVLKSFYITEIEPFMPTQEVMELLTNNRPKSSHFTRSGGEYPFNLYRDLIRPKECFGG
                     AHTYEIPYANGSSKPFELPLREIIECDNMNSVAITHFAKGAAFVPMSDSQTAPVWCKF
                     GKRMNYKIIAPEGWTPYVRSNGEVVAHKIFMEAASYDQALHWCRNENAKLGGFNDRKE
                     FEAIAALITVHQTNRYYRLGAHQRDECDGVSGYTGIEGGTCYRDRIFGWIDNVASENI
                     DESLWGDDEPDGGRRRSALGCWGSNCVQNTLVFSHFVNSHTDGIPRITDSFHDDRLPY
                     VCTMDVTMIPIL"
ORIGIN      
        1 atcaaaaatc aatcagttcg agtttttaaa ttgaacgttc aaacttcttc tcagcaatga
       61 gtttgatgtt tgctcttttc cttggcatac tttgctcaca aaaagaacta tacgctcaac
      121 aaattactgg tggattaatt gtcgattctg gactacaaaa ggcttgtgca caggctggag
      181 gcgtcttcag accgaggacc gatgctcagt cagtgaccgg agacatttgt gagatgtcat
      241 tctccgtggt caccagcgat gaagccgacg cgacgaactt ctgtgagctc tacgcgccct
      301 ggagacttcg aagtgttcgg attgagaagg acgtagcagg ctttacaaga actgtctgtg
      361 tagttgaagc cacattcacc tgcggtgctg gatggattca gatgttcgga cactgcttcc
      421 gacgtctcga caagttctct cgccacaatc agacagaggc caagaacatc tgtgccaacc
      481 tagatggtca taagggaagc attgcatacc ttcatcatag atatattgtt ggcgtttgga
      541 aaaacttctt caaaggaatc agtcaaatct gggtggacgg ctccgagacc tgggaccaat
      601 atatcgtgaa gacaggatca gttgatggtc gagctctcgc ccttgccttc accggagaca
      661 cctttgactt ctcagtgatg ccgaactcgc tgatcagcat cgatccgaac ctgaagctcg
      721 aggtgttgtg ccagtacaaa cctgatttga cgccggcgga ggtgaactat cttggacgga
      781 gatattcgga gatatactat ccaggagttc atgtgagtga tggagtgctc atccgatcgg
      841 cttctcacta taccaggagt aagacgaatc tggaggtttg caagaaagtt ctaaagtcgt
      901 tttatatcac cgagatcgag ccattcatgc caacccaaga ggttatggag ctactcacca
      961 ataatcgccc gaaaagctcg cacttcacta gatctggcgg agagtaccca ttcaacttgt
     1021 atcgggactt gattcggccc aaagagtgct tcggaggtgc acatacatac gaaattccct
     1081 atgcaaatgg ttcctcaaaa ccattcgaac tgccactgag agaaataatc gaatgtgaca
     1141 acatgaattc agttgcgatc actcattttg caaagggagc agcttttgtg ccaatgtctg
     1201 actcgcagac ggcgcccgtg tggtgcaagt ttgggaagag gatgaactac aagatcatcg
     1261 ctcccgaagg atggacaccg tacgtgcgat cgaatgggga ggttgttgct cacaagattt
     1321 ttatggaagc agcatcgtat gatcaagctc tgcattggtg ccgcaatgag aacgcaaaac
     1381 tcggaggatt caatgatcgg aaagagtttg aagctattgc agcactgatt actgtccacc
     1441 aaacgaaccg atactaccga ctcggagccc atcaacgtga cgagtgtgac ggtgtatctg
     1501 gttataccgg cattgaaggc ggtacatgtt atcgtgatcg aatcttcgga tggattgaca
     1561 acgtggcgag tgaaaacatt gacgaaagtc tttggggaga tgacgagccg gacggaggaa
     1621 ggagaagatc agcactcggt tgttgggggt ccaattgcgt tcagaatact cttgttttca
     1681 gtcattttgt gaacagccat actgacggta ttccacgtat tactgattca ttccatgacg
     1741 acaggctgcc atatgtttgc acgatggatg tcacgatgat tccgatcctt taaatgtttt
     1801 ttgtcgtgaa aagagagtac gaataaaaat ttttgtaatt a
//
57..1793
/gene="clec-123"
/locus_tag="CELE_Y25C1A.1"
/standard_name="Y25C1A.1"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="C-type lectin domain-containing protein"
/protein_id="NP_494450.1"
/db_xref="GeneID:173658"
/db_xref="WormBase:WBGene00021288"
/translation="MSLMFALFLGILCSQKELYAQQITGGLIVDSGLQKACAQAGGVF
RPRTDAQSVTGDICEMSFSVVTSDEADATNFCELYAPWRLRSVRIEKDVAGFTRTVCV
VEATFTCGAGWIQMFGHCFRRLDKFSRHNQTEAKNICANLDGHKGSIAYLHHRYIVGV
WKNFFKGISQIWVDGSETWDQYIVKTGSVDGRALALAFTGDTFDFSVMPNSLISIDPN
LKLEVLCQYKPDLTPAEVNYLGRRYSEIYYPGVHVSDGVLIRSASHYTRSKTNLEVCK
KVLKSFYITEIEPFMPTQEVMELLTNNRPKSSHFTRSGGEYPFNLYRDLIRPKECFGG
AHTYEIPYANGSSKPFELPLREIIECDNMNSVAITHFAKGAAFVPMSDSQTAPVWCKF
GKRMNYKIIAPEGWTPYVRSNGEVVAHKIFMEAASYDQALHWCRNENAKLGGFNDRKE
FEAIAALITVHQTNRYYRLGAHQRDECDGVSGYTGIEGGTCYRDRIFGWIDNVASENI
DESLWGDDEPDGGRRRSALGCWGSNCVQNTLVFSHFVNSHTDGIPRITDSFHDDRLPY
VCTMDVTMIPIL"
Feature NM_062049 : 1 segment
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Supplemental Content

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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for C-type lectin domain-containing protein (NP_494450.1).

More about the clec-123 gene

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