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Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein (AT5G62610), mRNA

NCBI Reference Sequence: NM_001345555.1

FASTA Graphics 

LOCUS       NM_001345555            1462 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding
            superfamily protein (AT5G62610), mRNA.
ACCESSION   NM_001345555
VERSION     NM_001345555.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1462)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1462)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1462)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1462)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
FEATURES             Location/Qualifiers
     source          1..1462
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1462
                     /locus_tag="AT5G62610"
                     /gene_synonym="MRG21.2; MRG21_2"
                     /db_xref="Araport:AT5G62610"
                     /db_xref="GeneID:836382"
                     /db_xref="TAIR:AT5G62610"
     CDS             348..1193
                     /locus_tag="AT5G62610"
                     /gene_synonym="MRG21.2; MRG21_2"
                     /codon_start=1
                     /product="basic helix-loop-helix (bHLH) DNA-binding
                     superfamily protein"
                     /protein_id="NP_001330306.1"
                     /db_xref="GeneID:836382"
                     /db_xref="Araport:AT5G62610"
                     /db_xref="TAIR:AT5G62610"
                     /translation="MDPPLVNDSSFSAANPSSYTLSEIWPFPVNDAVRSGLRLAVNSG
                     RVFTRSEHSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNELKE
                     SGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQA
                     TDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSM
                     KLEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQQEANETRVSQPEWLHMQVDGN
                     FNRTT"
ORIGIN      
        1 aaaaaagctt tatgggaaaa atggaaagag aggaattggg cttcatgtgt gacacctttg
       61 catccagaaa cggcaaaata tttgatgtaa gctgtgtaat taatgagatt ttctgaaagt
      121 attggtgata aatcatcttc cattgcatac tagtggcgca ttatcactac ccacatctgt
      181 cttaccttct ccgatctctc tctctatttg tccacctcac acacaaccct ataaacaaga
      241 caagacctcg caaagctcaa accttttcct tctttttttc tatcaagttc ctcacttctc
      301 ggatccgggt cctaaatctg ggtcaaccct ttttacgatc atcggaaatg gaccctccac
      361 tagtgaacga ttcctccttc tctgcagcta atccttcttc ttacactctc tccgagattt
      421 ggcctttccc tgtaaacgac gccgttcgct ctggtctccg tttagctgtt aactccggtc
      481 gagtctttac tcgctctgaa cattccggca ataaagacgt ctccgcggct gaggaatcta
      541 cagtcaccga tctaactgct ggctggggaa gtagaaagac tagagatttg aactctgagg
      601 atgattcttc aaagatggtt tcttccagca gcagtggtaa tgaattgaaa gaatcagggg
      661 ataagaaaag aaaactgtgt ggatctgaaa gtggaaatgg agatggttcg atgagacctg
      721 aaggcgaaac aagttcgggt ggtggtggaa gcaaagcaac ggaacagaag aacaaacctg
      781 agccaccaaa ggattatatt catgtgagag caagaagagg acaagctact gaccggcata
      841 gtttagcaga gcgagctaga agagaaaaga tcagtgagaa gatgacagct cttcaagata
      901 taattccagg atgtaataag ataatcggaa aagcccttgt gctcgatgag attatcaatt
      961 atattcagtc attgcagcgg caagttgagt ttctatcaat gaagctagaa gttgttaact
     1021 cgggtgcaag tactggtccg acaataggag tttttccttc cggtgatctc gggactttac
     1081 cgattgacgt tcatcgaaca atatacgagc aacaagaagc taatgaaacc cgagtatctc
     1141 aaccggagtg gctccatatg caggttgatg ggaactttaa ccgaaccaca taaaaaagag
     1201 tctttctctg attgatggat gtgttttgta ggcagtaaaa atgaatgcaa ccctttattt
     1261 tttatcctat gcgtgtgtat cattttgctg ttatatcata agatagaata tgagagtgac
     1321 cagagagatt aacactttat aaaacattgt tgtattgtcc tattatataa cttgtaacaa
     1381 ttgattcagt aacatatgtt ggtcttaaat cttgtccttt gtataatctt tatgttatga
     1441 tgaatcaatg atacgttttt tt
//
Feature
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Reference sequence information

  • RefSeq alternative splicing
    See the other reference mRNA sequence splice variant for the AT5G62610 gene (NM_125656.3).
  • RefSeq protein product
    See the reference protein sequence for basic helix-loop-helix (bHLH) DNA-binding superfamily protein (NP_001330306.1).

More about the AT5G62610 gene

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