LOCUS NM_001345016 3221 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana LIM domain protein (AT5G52950), mRNA.
ACCESSION NM_001345016
VERSION NM_001345016.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 3221)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 3221)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3221)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 3221)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
FEATURES Location/Qualifiers
source 1..3221
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..3221
/locus_tag="AT5G52950"
/gene_synonym="MXC20.3; MXC20_3"
/db_xref="Araport:AT5G52950"
/db_xref="GeneID:835372"
/db_xref="TAIR:AT5G52950"
CDS 86..2251
/locus_tag="AT5G52950"
/gene_synonym="MXC20.3; MXC20_3"
/codon_start=1
/product="LIM domain protein"
/protein_id="NP_001332602.1"
/db_xref="GeneID:835372"
/db_xref="Araport:AT5G52950"
/db_xref="TAIR:AT5G52950"
/translation="MAGDLLYAKTQRFVLLIDLNPLLIKPNSEQYLAVVISAAEKLLL
FPPLSASLFSFKFFFSSLSSLLSSSKLSSLSISSSPLSFDLPNPTLVSLKRAIDAVKG
YELRSSSTVATAASPRGVNVAANLRQIVYDYAWEPVVRDPEIGMIPGFTDGGLDVVRS
NLVVMFSPISRDLDWVSEFLDVKSGDECFSDLDLFKSKLREIFYCVNELFDDRDIQLS
WIDVKSGDERCELGLKSGFFDSGIRELGWGHCSTDSIVFGSSVVPFGLIYPAIGISPK
LSTSQKFTLQASLEIADINGKPMECKCGGELEFSSSEIFSGKRCDEFINLASGTEPVN
HDSLVEQFCDGSTKLSIKALRMCDDLIELERYTCDTFVVHQVSQDSDQDQEEESAFWA
DLVFQILGKETGERVAKRSSPIWQILLSYLYREGFSALVSFSNSNGSLRTGILKPFTF
SSALICVFDNGVSPQTVDHEDSRKKVSCSEYKRKPRKNSLNDISWEEFCRSVKDYGQI
DLEDVYFFKYSKSKKLKFLKCWMKQISKPRGCSLSVASNCNALEDVDANPIEEKNNSS
EETDKASSPLPLAEEDIALSGNRISGKQESNTYVHASESSENFFVSLPSKIKQGIESE
EIDLSALAERLVKSCVFYSSQRAEKDYSCESGTLLLVIDELTKMLLKDPKDLVAKFKK
KDSSSVASERNCDEAGPSRIVREYPFTFCLVTVANLFIY"
ORIGIN
1 aaaacataac ctcgtagctc actccctcct ctcttcttca acctcaaaac caaaatcgaa
61 tcttctctct ctctgcttca tttcaatggc tggagatttg ttatacgcca aaacgcagcg
121 ttttgtgctt ttgatagatc ttaatccgct tctgatcaaa cccaattcgg agcaatacct
181 agccgtcgtg atctccgccg ccgagaagct tctcttattt cctcctttat ctgcttctct
241 cttctctttc aaattcttct tttcttctct ttcttctctc ttatcatcct caaagctctc
301 gtcactctca atttcatctt ctccgctttc atttgacctt cctaacccta cactcgtctc
361 tctcaaacgc gccatcgacg cggttaaagg atatgaactt cgatctagct ccacggtggc
421 gacggcggca tcgcctcgtg gggttaatgt cgcggcgaat ttgcgacaga ttgtttatga
481 ttacgcttgg gaaccggtgg ttcgagatcc ggagataggt atgattcctg gatttactga
541 tggtggatta gatgttgtga ggtcgaattt ggttgtgatg ttttccccaa tttctaggga
601 tttggattgg gtttctgagt ttcttgatgt taagagtggt gatgagtgtt ttagcgactt
661 ggatttgttt aagtcaaagt taagggagat tttttattgt gtgaatgagt tatttgatga
721 tagagatatt caattaagct ggattgatgt taaatctgga gatgaaagat gtgaattggg
781 attgaagtct gggtttttcg atagtgggat tagagaattg ggttgggggc attgttctac
841 tgattcaatt gtttttggtt cttcagttgt tccctttgga ttaatatatc cagcaattgg
901 tatttcccca aagctatcta ctagccagaa atttaccctt caggctagtc ttgagattgc
961 agatattaat ggtaaaccta tggaatgcaa gtgtggtggt gagttagagt tttcttcttc
1021 tgaaatattt agtgggaaga ggtgtgatga gtttatcaac ttagctagtg ggactgagcc
1081 agtcaatcat gactctctag ttgaacagtt ttgtgatggg agtaccaaac tcagtattaa
1141 ggccttgagg atgtgtgatg atcttattga actagagagg tatacttgcg atacttttgt
1201 tgttcatcaa gtctcccagg actctgatca agatcaggag gaggagagtg cgttttgggc
1261 tgacctggtt tttcagatat taggaaagga gacgggtgag agagtagcca aaagatcatc
1321 acccatttgg cagatcttat taagttatct ctatagggaa ggtttctcag cattggtatc
1381 tttttcaaat agcaatggta gtttgcggac aggaatcctc aagcccttca ctttttcctc
1441 ggccttaatc tgtgtttttg acaatggagt gtctcctcaa actgtggatc atgaagatag
1501 caggaagaaa gtcagttgta gcgaatataa aagaaaacca aggaaaaatt ctcttaatga
1561 cattagctgg gaggagttct gcagatcagt gaaagattat ggtcaaatag atctagaaga
1621 tgtttatttc ttcaagtata gcaagtcgaa gaaacttaag tttctgaaat gctggatgaa
1681 acagattagt aaacccagag gttgcagctt atccgtggct agtaattgca atgcattgga
1741 ggatgtggac gcaaatccaa ttgaggaaaa gaacaactcc tctgaagaga cagataaagc
1801 tagttctcct ttacctctag ctgaagagga cattgctttg agtggaaatc gtatatccgg
1861 aaagcaggaa agtaatacgt atgttcatgc atcagaatca tcagagaatt tcttcgttag
1921 tcttcctagt aaaatcaagc aagggataga gtctgaagaa atagacttgt cagctcttgc
1981 cgagcggctt gtcaagtctt gtgtcttcta ctcctctcaa agagctgaga aggactatag
2041 ctgtgagagt ggaaccctct tgttggtcat tgacgagcta accaagatgt tactgaaaga
2101 tccgaaagat ttagttgcca agttcaaaaa gaaagattca tcatcagtgg ctagtgagcg
2161 gaattgtgat gaagctggac ccagtaggat cgttagagag tatcctttta ctttctgttt
2221 ggttacagta gccaacttat tcatttactg atgctttctt ttcatttatc taagctgaat
2281 tgtttggcat tgttgttctg ttttctttaa taagctataa gatacgagct gcagattctt
2341 ttcaggatgg agattctaag atgtaagaaa ggtttgggaa atgaagaatc tgtgacacag
2401 aagtttgcaa aacagatttg catgttcctt gagggcattc agtgcaagtt agatggcgga
2461 ttctttggtg aatggagcct tgataagtat gtagacaaaa ctataaaagc caggtatcag
2521 catattctgg gaggagctgt caatataata tatacagaga tggatctgct catgttcact
2581 gatgaggatc ttgaagatag tttcatgaac aatgaagaca gtagtcaatc agggagagaa
2641 aatatccata gcaatttcaa aaatcatcat catagtcaaa gtaatgaaga tgttcctggt
2701 acgagtaagc agaaaaacac tgaggaaagc agagaagcta agaaagaggt tgaagcacaa
2761 ggaatgaggg agagggcaag aagattctcg agtttcacaa gttggatgcc tgatctttgt
2821 agagtctggg caccaaaaca aacgaagaac tctaaaggca aggccgacca gcaacagaga
2881 acggccaaaa gaaagaagga gcaaagatca gtggaatatg atagagtatg tgagacacca
2941 atgacaacaa tagagaccaa acgaatacga actggtaaca aagatgacta cgaatgtgag
3001 actttgcctc gtagttcagt accaaaggct ttgtttcagg atgattgttc ttaggtacac
3061 ttacaagtga atgaagccta aaaatgggaa aagaaaatgt atcattagag tttgagtggg
3121 atgttctttg ttagagttag taattcaaac cctatacgta gatggaatct cattgtactt
3181 ttttacaaaa tcagatatta atacaagaat gagtgaatca a
//