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Arabidopsis thaliana LIM domain protein (AT5G52950), mRNA

NCBI Reference Sequence: NM_001345016.1

FASTA Graphics 

LOCUS       NM_001345016            3221 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana LIM domain protein (AT5G52950), mRNA.
ACCESSION   NM_001345016
VERSION     NM_001345016.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 3221)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 3221)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3221)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 3221)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
FEATURES             Location/Qualifiers
     source          1..3221
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..3221
                     /locus_tag="AT5G52950"
                     /gene_synonym="MXC20.3; MXC20_3"
                     /db_xref="Araport:AT5G52950"
                     /db_xref="GeneID:835372"
                     /db_xref="TAIR:AT5G52950"
     CDS             86..2251
                     /locus_tag="AT5G52950"
                     /gene_synonym="MXC20.3; MXC20_3"
                     /codon_start=1
                     /product="LIM domain protein"
                     /protein_id="NP_001332602.1"
                     /db_xref="GeneID:835372"
                     /db_xref="Araport:AT5G52950"
                     /db_xref="TAIR:AT5G52950"
                     /translation="MAGDLLYAKTQRFVLLIDLNPLLIKPNSEQYLAVVISAAEKLLL
                     FPPLSASLFSFKFFFSSLSSLLSSSKLSSLSISSSPLSFDLPNPTLVSLKRAIDAVKG
                     YELRSSSTVATAASPRGVNVAANLRQIVYDYAWEPVVRDPEIGMIPGFTDGGLDVVRS
                     NLVVMFSPISRDLDWVSEFLDVKSGDECFSDLDLFKSKLREIFYCVNELFDDRDIQLS
                     WIDVKSGDERCELGLKSGFFDSGIRELGWGHCSTDSIVFGSSVVPFGLIYPAIGISPK
                     LSTSQKFTLQASLEIADINGKPMECKCGGELEFSSSEIFSGKRCDEFINLASGTEPVN
                     HDSLVEQFCDGSTKLSIKALRMCDDLIELERYTCDTFVVHQVSQDSDQDQEEESAFWA
                     DLVFQILGKETGERVAKRSSPIWQILLSYLYREGFSALVSFSNSNGSLRTGILKPFTF
                     SSALICVFDNGVSPQTVDHEDSRKKVSCSEYKRKPRKNSLNDISWEEFCRSVKDYGQI
                     DLEDVYFFKYSKSKKLKFLKCWMKQISKPRGCSLSVASNCNALEDVDANPIEEKNNSS
                     EETDKASSPLPLAEEDIALSGNRISGKQESNTYVHASESSENFFVSLPSKIKQGIESE
                     EIDLSALAERLVKSCVFYSSQRAEKDYSCESGTLLLVIDELTKMLLKDPKDLVAKFKK
                     KDSSSVASERNCDEAGPSRIVREYPFTFCLVTVANLFIY"
ORIGIN      
        1 aaaacataac ctcgtagctc actccctcct ctcttcttca acctcaaaac caaaatcgaa
       61 tcttctctct ctctgcttca tttcaatggc tggagatttg ttatacgcca aaacgcagcg
      121 ttttgtgctt ttgatagatc ttaatccgct tctgatcaaa cccaattcgg agcaatacct
      181 agccgtcgtg atctccgccg ccgagaagct tctcttattt cctcctttat ctgcttctct
      241 cttctctttc aaattcttct tttcttctct ttcttctctc ttatcatcct caaagctctc
      301 gtcactctca atttcatctt ctccgctttc atttgacctt cctaacccta cactcgtctc
      361 tctcaaacgc gccatcgacg cggttaaagg atatgaactt cgatctagct ccacggtggc
      421 gacggcggca tcgcctcgtg gggttaatgt cgcggcgaat ttgcgacaga ttgtttatga
      481 ttacgcttgg gaaccggtgg ttcgagatcc ggagataggt atgattcctg gatttactga
      541 tggtggatta gatgttgtga ggtcgaattt ggttgtgatg ttttccccaa tttctaggga
      601 tttggattgg gtttctgagt ttcttgatgt taagagtggt gatgagtgtt ttagcgactt
      661 ggatttgttt aagtcaaagt taagggagat tttttattgt gtgaatgagt tatttgatga
      721 tagagatatt caattaagct ggattgatgt taaatctgga gatgaaagat gtgaattggg
      781 attgaagtct gggtttttcg atagtgggat tagagaattg ggttgggggc attgttctac
      841 tgattcaatt gtttttggtt cttcagttgt tccctttgga ttaatatatc cagcaattgg
      901 tatttcccca aagctatcta ctagccagaa atttaccctt caggctagtc ttgagattgc
      961 agatattaat ggtaaaccta tggaatgcaa gtgtggtggt gagttagagt tttcttcttc
     1021 tgaaatattt agtgggaaga ggtgtgatga gtttatcaac ttagctagtg ggactgagcc
     1081 agtcaatcat gactctctag ttgaacagtt ttgtgatggg agtaccaaac tcagtattaa
     1141 ggccttgagg atgtgtgatg atcttattga actagagagg tatacttgcg atacttttgt
     1201 tgttcatcaa gtctcccagg actctgatca agatcaggag gaggagagtg cgttttgggc
     1261 tgacctggtt tttcagatat taggaaagga gacgggtgag agagtagcca aaagatcatc
     1321 acccatttgg cagatcttat taagttatct ctatagggaa ggtttctcag cattggtatc
     1381 tttttcaaat agcaatggta gtttgcggac aggaatcctc aagcccttca ctttttcctc
     1441 ggccttaatc tgtgtttttg acaatggagt gtctcctcaa actgtggatc atgaagatag
     1501 caggaagaaa gtcagttgta gcgaatataa aagaaaacca aggaaaaatt ctcttaatga
     1561 cattagctgg gaggagttct gcagatcagt gaaagattat ggtcaaatag atctagaaga
     1621 tgtttatttc ttcaagtata gcaagtcgaa gaaacttaag tttctgaaat gctggatgaa
     1681 acagattagt aaacccagag gttgcagctt atccgtggct agtaattgca atgcattgga
     1741 ggatgtggac gcaaatccaa ttgaggaaaa gaacaactcc tctgaagaga cagataaagc
     1801 tagttctcct ttacctctag ctgaagagga cattgctttg agtggaaatc gtatatccgg
     1861 aaagcaggaa agtaatacgt atgttcatgc atcagaatca tcagagaatt tcttcgttag
     1921 tcttcctagt aaaatcaagc aagggataga gtctgaagaa atagacttgt cagctcttgc
     1981 cgagcggctt gtcaagtctt gtgtcttcta ctcctctcaa agagctgaga aggactatag
     2041 ctgtgagagt ggaaccctct tgttggtcat tgacgagcta accaagatgt tactgaaaga
     2101 tccgaaagat ttagttgcca agttcaaaaa gaaagattca tcatcagtgg ctagtgagcg
     2161 gaattgtgat gaagctggac ccagtaggat cgttagagag tatcctttta ctttctgttt
     2221 ggttacagta gccaacttat tcatttactg atgctttctt ttcatttatc taagctgaat
     2281 tgtttggcat tgttgttctg ttttctttaa taagctataa gatacgagct gcagattctt
     2341 ttcaggatgg agattctaag atgtaagaaa ggtttgggaa atgaagaatc tgtgacacag
     2401 aagtttgcaa aacagatttg catgttcctt gagggcattc agtgcaagtt agatggcgga
     2461 ttctttggtg aatggagcct tgataagtat gtagacaaaa ctataaaagc caggtatcag
     2521 catattctgg gaggagctgt caatataata tatacagaga tggatctgct catgttcact
     2581 gatgaggatc ttgaagatag tttcatgaac aatgaagaca gtagtcaatc agggagagaa
     2641 aatatccata gcaatttcaa aaatcatcat catagtcaaa gtaatgaaga tgttcctggt
     2701 acgagtaagc agaaaaacac tgaggaaagc agagaagcta agaaagaggt tgaagcacaa
     2761 ggaatgaggg agagggcaag aagattctcg agtttcacaa gttggatgcc tgatctttgt
     2821 agagtctggg caccaaaaca aacgaagaac tctaaaggca aggccgacca gcaacagaga
     2881 acggccaaaa gaaagaagga gcaaagatca gtggaatatg atagagtatg tgagacacca
     2941 atgacaacaa tagagaccaa acgaatacga actggtaaca aagatgacta cgaatgtgag
     3001 actttgcctc gtagttcagt accaaaggct ttgtttcagg atgattgttc ttaggtacac
     3061 ttacaagtga atgaagccta aaaatgggaa aagaaaatgt atcattagag tttgagtggg
     3121 atgttctttg ttagagttag taattcaaac cctatacgta gatggaatct cattgtactt
     3181 ttttacaaaa tcagatatta atacaagaat gagtgaatca a
//
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