LOCUS NM_001343414 1208 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana COBRA-like extracellular glycosyl-phosphatidyl
inositol-anchored protein family (IRX6), mRNA.
ACCESSION NM_001343414
VERSION NM_001343414.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1208)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1208)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1208)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1208)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
FEATURES Location/Qualifiers
source 1..1208
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1208
/gene="IRX6"
/locus_tag="AT5G15630"
/gene_synonym="COBL4; COBRA-LIKE4; F14F8.10; F14F8_10;
IRREGULAR XYLEM 6"
/note="Encodes a member of the COBRA family, similar to
phytochelatin synthetase. Involved in secondary cell wall
biosynthesis. Mutants make smaller plants with reduced
levels of cellulose and cell wall sugars."
/db_xref="Araport:AT5G15630"
/db_xref="GeneID:831417"
/db_xref="TAIR:AT5G15630"
CDS 148..1173
/gene="IRX6"
/locus_tag="AT5G15630"
/gene_synonym="COBL4; COBRA-LIKE4; F14F8.10; F14F8_10;
IRREGULAR XYLEM 6"
/codon_start=1
/product="COBRA-like extracellular glycosyl-phosphatidyl
inositol-anchored protein family"
/protein_id="NP_001331537.1"
/db_xref="GeneID:831417"
/db_xref="Araport:AT5G15630"
/db_xref="TAIR:AT5G15630"
/translation="MRLLFSFCFFFFMIIFTATAYDPLDPSGNITIKWDIMSWTADGY
VATVTMNNFQIYRHIQNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCK
KTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSAAVSQFQVSAGLAGTTNKTVKLP
KNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQALMTWNVTCTYSQFLARKHPSCC
VSFSSFYNDTITPCPSCACGCENKKSCVKADSKILTKKGLNTPKKDNTPLLQCTHHMC
PVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLNNVTQVFSFDYKPVS
PYGSISK"
ORIGIN
1 cttcagacca aaaagactca tcaataatct gtaaaaaact tatgttttaa atcccataaa
61 cacatcaatt caaattcctg aagaagaaaa agcctgaggt taaacactgc acctgggaat
121 caatttcctt aaatctttac tcaaaagatg aggctcctct tcagcttctg cttcttcttc
181 ttcatgatca tctttaccgc aactgcttat gatccattag atcctagtgg taacattaca
241 atcaaatggg atattatgtc ctggacggca gatggctatg tggctacggt aactatgaac
301 aacttccaaa tctaccggca catacaaaac cctggttgga cattaggttg gacatgggca
361 aagaaagagg tgatttggtc aatggttggt gcacaaacaa cagaacaagg agactgttcc
421 aagtttaagg gaaatgtacc tcattgctgt aagaaaaccc ctacagttgt tgatctcttg
481 ccaggtgtgc cttataatca acagttctca aactgttgca aaggaggtgt aattggagct
541 tggggtcaag atccatcagc cgctgtatcc cagtttcagg ttagtgctgg tttagctgga
601 actacaaaca agactgtcaa gcttcctaag aacttcactt tgcttggtcc cggccctggt
661 tacacttgcg gtcctgccaa aatcgtgccc tctaccgttt ttctcacaac tgacaaacgg
721 cgaaaaacac aagctttgat gacatggaat gttacctgca catactcaca gtttttagca
781 agaaagcatc caagctgttg tgtctccttc tcttctttct acaacgacac cataactcct
841 tgcccgtctt gtgcctgtgg ctgcgagaac aaaaagagct gcgtcaaggc tgattctaag
901 attctaacca agaaaggtct caacacacca aaaaaggaca acactccttt gttgcaatgc
961 acacatcaca tgtgccctgt tagagtccac tggcacgtta aaactaacta caaagactat
1021 tggcgagtga agatagcaat cacaaatttc aattaccgga tgaatcatac actctggact
1081 ttagcaattc agcatccaaa tctcaacaat gtgactcaag ttttcagctt tgactacaaa
1141 ccagtctctc cttacggatc cataagtaaa taaatacctc cctcaaccac aactattcaa
1201 cttcaaac
//