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Arabidopsis thaliana voltage dependent anion channel 5 (VDAC5), partial mRNA

NCBI Reference Sequence: NM_001339446.1

FASTA Graphics 

LOCUS       NM_001339446            1276 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana voltage dependent anion channel 5 (VDAC5),
            partial mRNA.
ACCESSION   NM_001339446
VERSION     NM_001339446.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1276)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1276)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1276)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            <1..1276
                     /gene="VDAC5"
                     /locus_tag="AT3G49920"
                     /gene_synonym="ARABIDOPSIS THALIANA VOLTAGE DEPENDENT
                     ANION CHANNEL 5; ATVDAC5; F3A4.1; voltage dependent anion
                     channel 5"
                     /note="Encodes a voltage-dependent anion channel (VDAC:
                     AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3,
                     AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to
                     be porin-type, beta-barrel diffusion pores. They are
                     prominently localized in the outer mitochondrial membrane
                     and are involved in metabolite exchange between the
                     organelle and the cytosol."
                     /db_xref="Araport:AT3G49920"
                     /db_xref="GeneID:824154"
                     /db_xref="TAIR:AT3G49920"
     CDS             1..315
                     /gene="VDAC5"
                     /locus_tag="AT3G49920"
                     /gene_synonym="ARABIDOPSIS THALIANA VOLTAGE DEPENDENT
                     ANION CHANNEL 5; ATVDAC5; F3A4.1; voltage dependent anion
                     channel 5"
                     /codon_start=1
                     /product="voltage dependent anion channel 5"
                     /protein_id="NP_001325884.1"
                     /db_xref="GeneID:824154"
                     /db_xref="Araport:AT3G49920"
                     /db_xref="TAIR:AT3G49920"
                     /translation="MSKGPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTST
                     ALKNGVLHAANVATQYKYRNTFFDVKIDTDFNVKSLVYPMNKFVSIDHNTLSLCLFFF
                     FT"
ORIGIN      
        1 atgagtaagg gtccgggact attcgccgac atcggaaaat atgcgaaaga tctgttgacg
       61 agagattaca gtaccgatca gaaattcagt atctccacta acagtgtctc cggcgtcgct
      121 cttacttcca ctgctctcaa gaatggagta ctacatgctg ctaatgttgc cacacaatac
      181 aagtacagaa acactttctt cgatgtcaag atcgatactg atttcaatgt taagtctctt
      241 gtttatccaa tgaataaatt tgtctcaatt gatcacaata cgctaagttt gtgcctcttt
      301 ttttttttca cttgatcaga tcctgacaac catcacatca ctgagatcct cccatcgaca
      361 aaagccattg cttccttcaa agtgcctgat tacaactcta gcaagctgga agtccaatat
      421 ttccatgatc acgcaacagt tacagccgct gcagccttac aataaaaccc tctaattgat
      481 gtaactgctg ctcttggctc accaactatc tcatttggtg ctgaagctgg gtatgacacc
      541 acatctcgaa ctttcacaaa gtacaacgtc ggagtcagtg tcacaaagcc agatcaatgt
      601 gtctccataa tattgggaga taaaggagat tcgatcaaag cctcttatgt atattaccta
      661 gatgagtcga cgagaagcgc aacagttgga gaggttatca ggaaaatctc aactaatgag
      721 acaacagtaa ctgttggtgg attgtatgcg gttgatcact taacgaatgt gaaagctaag
      781 ctgaacagta acggtaagtt tggagctctt ctgcaacacg agggccttcc aaaatcgata
      841 gtgacaatct caggtgagat tgataccaag acattagaca agtacccaag gttaggtctc
      901 tcgctttccc ttaaaccttg aagagctaca cataccaatg gaagttaggt ttaacaatgg
      961 agactaccct ttctgtctcc tatgacattg tttagagttg agttggttat tgaataatga
     1021 atccctcggc taatctcctt atttctgata attctttttc ggatttgttt cttttggggc
     1081 tcacgcttaa taggaacagt tatatcgctc ttttctgaga gttttttttt attgttttgt
     1141 taagagaaac aaaccttatg tgaaactaga atcaatcaaa gactcaagtt ggaaaagaat
     1201 cagagatagg tcttctacac atgtacatca aatgtgaaaa ctgttcagtc ggataattgc
     1261 atttgagata tgtttt
//
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