LOCUS NM_001339446 1276 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana voltage dependent anion channel 5 (VDAC5),
partial mRNA.
ACCESSION NM_001339446
VERSION NM_001339446.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1276)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1276)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1276)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1276)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
COMPLETENESS: incomplete on the 5' end.
FEATURES Location/Qualifiers
source 1..1276
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene <1..1276
/gene="VDAC5"
/locus_tag="AT3G49920"
/gene_synonym="ARABIDOPSIS THALIANA VOLTAGE DEPENDENT
ANION CHANNEL 5; ATVDAC5; F3A4.1; voltage dependent anion
channel 5"
/note="Encodes a voltage-dependent anion channel (VDAC:
AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3,
AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to
be porin-type, beta-barrel diffusion pores. They are
prominently localized in the outer mitochondrial membrane
and are involved in metabolite exchange between the
organelle and the cytosol."
/db_xref="Araport:AT3G49920"
/db_xref="GeneID:824154"
/db_xref="TAIR:AT3G49920"
CDS 1..315
/gene="VDAC5"
/locus_tag="AT3G49920"
/gene_synonym="ARABIDOPSIS THALIANA VOLTAGE DEPENDENT
ANION CHANNEL 5; ATVDAC5; F3A4.1; voltage dependent anion
channel 5"
/codon_start=1
/product="voltage dependent anion channel 5"
/protein_id="NP_001325884.1"
/db_xref="GeneID:824154"
/db_xref="Araport:AT3G49920"
/db_xref="TAIR:AT3G49920"
/translation="MSKGPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTST
ALKNGVLHAANVATQYKYRNTFFDVKIDTDFNVKSLVYPMNKFVSIDHNTLSLCLFFF
FT"
ORIGIN
1 atgagtaagg gtccgggact attcgccgac atcggaaaat atgcgaaaga tctgttgacg
61 agagattaca gtaccgatca gaaattcagt atctccacta acagtgtctc cggcgtcgct
121 cttacttcca ctgctctcaa gaatggagta ctacatgctg ctaatgttgc cacacaatac
181 aagtacagaa acactttctt cgatgtcaag atcgatactg atttcaatgt taagtctctt
241 gtttatccaa tgaataaatt tgtctcaatt gatcacaata cgctaagttt gtgcctcttt
301 ttttttttca cttgatcaga tcctgacaac catcacatca ctgagatcct cccatcgaca
361 aaagccattg cttccttcaa agtgcctgat tacaactcta gcaagctgga agtccaatat
421 ttccatgatc acgcaacagt tacagccgct gcagccttac aataaaaccc tctaattgat
481 gtaactgctg ctcttggctc accaactatc tcatttggtg ctgaagctgg gtatgacacc
541 acatctcgaa ctttcacaaa gtacaacgtc ggagtcagtg tcacaaagcc agatcaatgt
601 gtctccataa tattgggaga taaaggagat tcgatcaaag cctcttatgt atattaccta
661 gatgagtcga cgagaagcgc aacagttgga gaggttatca ggaaaatctc aactaatgag
721 acaacagtaa ctgttggtgg attgtatgcg gttgatcact taacgaatgt gaaagctaag
781 ctgaacagta acggtaagtt tggagctctt ctgcaacacg agggccttcc aaaatcgata
841 gtgacaatct caggtgagat tgataccaag acattagaca agtacccaag gttaggtctc
901 tcgctttccc ttaaaccttg aagagctaca cataccaatg gaagttaggt ttaacaatgg
961 agactaccct ttctgtctcc tatgacattg tttagagttg agttggttat tgaataatga
1021 atccctcggc taatctcctt atttctgata attctttttc ggatttgttt cttttggggc
1081 tcacgcttaa taggaacagt tatatcgctc ttttctgaga gttttttttt attgttttgt
1141 taagagaaac aaaccttatg tgaaactaga atcaatcaaa gactcaagtt ggaaaagaat
1201 cagagatagg tcttctacac atgtacatca aatgtgaaaa ctgttcagtc ggataattgc
1261 atttgagata tgtttt
//