LOCUS NM_001335977 4524 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana chromatin remodeling factor CHD3 (PICKLE)
(PKL), partial mRNA.
ACCESSION NM_001335977
VERSION NM_001335977.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 4524)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 4524)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4524)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 4524)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
COMPLETENESS: incomplete on the 5' end.
FEATURES Location/Qualifiers
source 1..4524
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene <1..4524
/gene="PKL"
/locus_tag="AT2G25170"
/gene_synonym="AT2G25170.1; CHD3; CHD3 PROTEIN; CHR6;
CKH2; CYTOKININ-HYPERSENSITIVE 2; ENHANCED
PHOTOMORPHOGENIC 1; EPP1; GYM; GYMNOS; PICKLE; SSL2;
SUPPRESSOR OF SLR 2"
/note="Encodes a SWI/SWF nuclear-localized chromatin
remodeling factor of the CHD3 group. Involved in
post-germination repression of embryonic development. Acts
with GA to establish repression of embryonic genes upon
germination. Protein preferentially accumulates in
differentiating tissues. Loss of function alleles are
associated with expression of embryonic traits in adult
plants and derepression of embryonic genes such as
PHEROS1. Is an extragenic suppressor of slr2 (SSL2).
Mutations in PKL (SSL2) restores lateral root formation in
the slr2 mutant slr-1. It was proposed that
PKL/SSL2-mediated chromatin remodeling negatively
regulates auxin-mediated LR formation in Arabidopsis."
/db_xref="Araport:AT2G25170"
/db_xref="GeneID:817055"
/db_xref="TAIR:AT2G25170"
CDS 1..4233
/gene="PKL"
/locus_tag="AT2G25170"
/gene_synonym="AT2G25170.1; CHD3; CHD3 PROTEIN; CHR6;
CKH2; CYTOKININ-HYPERSENSITIVE 2; ENHANCED
PHOTOMORPHOGENIC 1; EPP1; GYM; GYMNOS; PICKLE; SSL2;
SUPPRESSOR OF SLR 2"
/codon_start=1
/product="chromatin remodeling factor CHD3 (PICKLE)"
/protein_id="NP_001324293.1"
/db_xref="Araport:AT2G25170"
/db_xref="GeneID:817055"
/db_xref="TAIR:AT2G25170"
/translation="MLNCLFLWVILARVFSNFSLVLFHKKMSSLVERLRIRSDRKPVY
NLDDSDDDDFVPKKDRTFEQVEAIVRTDAKENACQACGESTNLVSCNTCTYAFHAKCL
VPPLKDASVENWRCPECVSPLNEIDKILDCEMRPTKSSEQGSSDAEPKPIFVKQYLVK
WKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQMESFNNSEDDFVAIRPEWTTV
DRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNEIQRFKDVNSRTRRSKDV
DHKRNPRDFQQFDHTPEFLKGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS
IALLASLFEENLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEF
YLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEG
HRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE
FKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFT
RNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQ
LLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDR
FNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV
MIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFASE
DDEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSVDDEEENGFLKAFKVANFEYIDENEA
AALEAQRVAAESKSSAGNSDRASYWEELLKDKFELHQAEELNALGKRKRSRKQLVSIE
EDDLAGLEDVSSDGDESYEAESTDGEAAGQGVQTGRRPYRRKGRDNLEPTPLMEGEGR
SFRVLGFNQSQRAIFVQTLMRYGAGNFDWKEFVPRLKQKTFEEINEYGILFLKHIAEE
IDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRILERFPG
LRSGKIWKEEHDKIMIRAVLKHGYGRWQAIVDDKELGIQELICKELNFPHISLSAAEQ
AGLQGQNGSGGSNPGAQTNQNPGSVITGNNNASADGAQVNSMFYYRDMQRRLVEFVKK
RVLLLEKAMNYEYAEEYYGLGGSSSIPTEEPEAEPKIADTVGVSFIEVDDEMLDGLPK
TDPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQPPSTKVNES
FRALKSINGNINTILSITSDQSKSHEDDTKPDLNNVEMKDTAEETKPLRGGVVDLNVV
EGEENIAEASGSVDVKMEEAKEEEKPKNMVVD"
ORIGIN
1 atgctcaatt gtttattctt atgggtaatt ttggctaggg ttttttccaa tttctctctc
61 gttctctttc acaagaaaat gagtagtttg gtggagaggc ttcgcatacg atctgatagg
121 aaaccagttt ataacctaga tgattctgat gatgacgact tcgttcctaa aaaagatcga
181 acctttgagc aagtcgaggc tattgtcaga actgatgcga aagaaaatgc atgtcaggct
241 tgtggggaaa gtactaatct tgtaagctgc aatacatgca cttatgcgtt ccatgctaaa
301 tgcttagttc cacctcttaa agatgcttcc gtggaaaatt ggagatgccc tgaatgtgtt
361 agtcctctta acgagataga taagatattg gattgtgaaa tgcgtcctac aaaatctagt
421 gaacaaggtt cctccgatgc ggaaccgaag ccaatttttg tgaaacagta tctcgtgaag
481 tggaagggat tatcatacct tcactgctct tgggtgcctg agaaggagtt ccagaaggct
541 tataagtcaa atcatcgttt aaaaaccaga gtgaacaatt ttcaccgtca aatggagtca
601 ttcaataaca gcgaagatga ttttgttgcc atacgtcctg agtggaccac tgttgatcgg
661 attcttgcct gcagagagga agatggggag ctggaatatc ttgtcaaata taaagagcta
721 tcctatgatg aatgttattg ggagtcagaa tcagacatct caaccttcca gaatgaaatt
781 caaaggttca aggatgtaaa ttctagaact cgcagaagta aagatgttga ccataaaaga
841 aatcccagag actttcaaca gtttgatcat actcctgaat tcctcaaagg cttgttacat
901 ccataccagc ttgagggact taattttttg cggttctcgt ggtcaaaaca gacgcatgta
961 atccttgctg atgaaatggg actaggcaag acaattcaaa gcattgccct tttagcttca
1021 ctttttgagg agaacctcat tccgcatttg gtaattgctc ctctatcgac tctgcgtaac
1081 tgggagagag agtttgccac atgggcccca cagatgaacg tggttatgta ttttggcact
1141 gcgcaagctc gagcagttat cagagaacat gagttttact tatcgaaaga tcaaaaaaag
1201 atcaagaaaa agaaatctgg acaaataagt agcgaaagca agcaaaaaag aatcaagttt
1261 gatgtcctcc tcacatcgta tgagatgatc aacctagatt cagcagttct aaaaccaatt
1321 aagtgggagt gcatgattgt tgatgaaggt catcgactga aaaataagga ttcaaagctg
1381 ttctcttcat tgacacagta ttcaagtaac caccgtattc ttctgacagg aacaccactt
1441 cagaacaact tggatgaact tttcatgctc atgcattttc ttgatgcggg gaagtttgga
1501 agtttggagg agttccagga ggagttcaaa gatattaatc aagaggagca gatctcaagg
1561 ttgcacaaaa tgttggctcc acatttgctc agaagggtaa aaaaagacgt aatgaaagac
1621 atgcccccca aaaaggagct cattttgcgt gttgatctga gcagtctgca gaaagaatat
1681 tacaaagcta tttttacccg taattatcaa gtattgacaa aaaagggagg tgctcaaatt
1741 tcccttaata acattatgat ggaattacga aaagtatgct gccatcctta tatgctagag
1801 ggtgttgagc cagttattca cgacgcaaat gaagctttca aacaactttt ggagtcttgt
1861 ggaaagctgc aacttctaga taaaatgatg gtcaaactga aagagcaagg acacagagtc
1921 ctaatataca cacagtttca gcatatgctg gacttacttg aagactactg tacccataag
1981 aaatggcagt acgagcgaat tgatggaaag gttggcggag ctgagcggca aatacgcata
2041 gatcggttca atgccaaaaa ttctaacaag ttttgttttt tgctctccac aagagctggt
2101 ggcttaggaa taaatcttgc aacggctgat acagtaatca tttatgacag tgactggaat
2161 cctcatgctg atcttcaagc aatggctaga gctcatcgac ttggccaaac aaataaggtg
2221 atgatttata ggctcataaa ccgaggcacc attgaagaaa ggatgatgca attgactaaa
2281 aagaaaatgg ttctagagca tcttgttgtt gggaaactca aaacacaaaa cattaatcag
2341 gaagagttag atgacatcat caggtatgga tcaaaggagc tttttgctag tgaagatgat
2401 gaagcaggaa agtctggaaa aattcattat gatgatgcgg ctatagacaa attgcttgat
2461 cgtgatctcg tggaggcaga ggaagtctca gtggatgatg aagaggagaa tggattctta
2521 aaggctttca aggtggctaa ttttgaatat atagatgaaa atgaggcagc agcattagag
2581 gcacagagag tcgctgctga aagcaaatct tcagcaggca attctgatag agcaagttat
2641 tgggaagagt tgttaaaaga taaatttgag ctgcaccagg ctgaggagct taatgctctt
2701 ggaaaaagga agagaagtcg caagcagttg gtatccattg aagaagatga tcttgctggt
2761 ttggaagatg tgagctctga tggagatgaa agttatgaag ctgagtcaac agatggtgaa
2821 gcagcaggac aaggagttca gacgggtcga cggccgtaca gaagaaaggg tcgcgataat
2881 ttggaaccaa ctccgttgat ggaaggtgag gggagatctt tcagagtact gggtttcaac
2941 cagagtcaaa gggccatttt tgtacagact ttgatgaggt atggagctgg caattttgat
3001 tggaaggagt ttgttcctcg cttaaagcag aagacctttg aagaaataaa tgaatatgga
3061 atactcttct tgaagcacat tgctgaagaa atagacgaga attctccaac cttttcagat
3121 ggtgtgccca aggaaggact tagaatagaa gatgttctag tcagaattgc tcttctgata
3181 ctagttcagg agaaggtgaa atttgtagaa gatcatccag ggaaacctgt tttcccctct
3241 cgcattcttg aaagattccc cggactgaga agtggaaaaa tttggaagga ggaacatgac
3301 aagataatga tacgtgctgt tttaaagcat gggtacggac ggtggcaagc tattgttgat
3361 gacaaagagt tggggatcca agagcttatc tgcaaagaat tgaatttccc tcacataagt
3421 ttgtctgctg ctgaacaagc tggtttgcag gggcagaatg gtagtggggg ctctaatccg
3481 ggagcacaga ctaaccagaa tcctggaagc gttattactg ggaacaataa tgcttctgct
3541 gatggggctc aagtaaactc gatgttctat tatcgggaca tgcagagacg acttgttgag
3601 tttgtgaaaa agcgagttct gcttttggag aaggcgatga attatgaata cgcagaggaa
3661 tattatggac ttggtggctc atcatctatc cctactgaag aaccagaagc tgaaccaaag
3721 atcgctgaca cagtgggagt gagctttatt gaggttgatg atgaaatgct tgatggactt
3781 cctaagactg atcctatcac ttcagaagaa attatggggg ctgctgttga caacaaccaa
3841 gcgcgggtcg aaatagctca acattataac cagatgtgca aacttcttga tgagaacgct
3901 cgggaatcag tccaagcata tgtaaacaac caaccaccga gtaccaaggt gaatgagagc
3961 ttccgtgcac tcaaatctat caatggtaac attaacacaa tcctttcgat tacatctgat
4021 caatccaagt cacatgaaga cgacaccaag ccagacctaa acaatgttga gatgaaggac
4081 acggccgaag aaacaaaacc gttaagaggt ggcgtcgtcg atctgaatgt ggtggaggga
4141 gaggagaaca ttgctgaagc tagtggaagt gttgatgtaa aaatggaaga agccaaagaa
4201 gaagagaagc caaagaacat ggtcgttgat tgactcaact ggtaaatcaa gattcaagac
4261 ccaaggggtc atgaagtagg aactgttgta ttatctttgg ttacatgtat gagacttatt
4321 cttccttttg taagacctat cttctgctta tgcaaacatt ggtaacattt taggctaact
4381 ttgatattct tcatgttttc ctatttttgg aaaatcatga aattatagtt tctcaatcaa
4441 agctgtttgg ttatgcacct caagcttttt aacagtgtgt gaataggttc gatgaagtcc
4501 ggttatgttt ccggttagac gtcg
//