LOCUS NM_001272285 2890 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant
C (CG10803), mRNA.
ACCESSION NM_001272285
VERSION NM_001272285.2
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 2890)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2890)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 2890)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 2890)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 2890)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 2890)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 2890)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 2890)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 2890)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 2890)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 2890)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 2890)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 2890)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 2890)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 2890)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 2890)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 2890)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 2890)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 2890)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 2890)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 21 (bases 1 to 2890)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 2890)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 23 (bases 1 to 2890)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NC_004354).
On Jul 15, 2014 this sequence version replaced NM_001272285.1.
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2890
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="X"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene 1..2890
/gene="CG10803"
/locus_tag="Dmel_CG10803"
/gene_synonym="Dmel\CG10803; rop-1"
/map="3D4-3D4"
/db_xref="FLYBASE:FBgn0029666"
/db_xref="GeneID:31320"
CDS 477..2201
/gene="CG10803"
/locus_tag="Dmel_CG10803"
/gene_synonym="Dmel\CG10803; rop-1"
/note="CG10803 gene product from transcript CG10803-RC;
CG10803-PC"
/codon_start=1
/product="uncharacterized protein, isoform C"
/protein_id="NP_001259214.1"
/db_xref="FLYBASE:FBpp0304001"
/db_xref="GeneID:31320"
/db_xref="FLYBASE:FBgn0029666"
/translation="MEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKLRRFCFIG
STDEPVYTTPALDLVVENNFASLKELCSQVSEDELVECLLSVLGSEPNEEQPPRPDEP
LLILAVFFTTCEDEKKRNAVRNRFTDLITSESDLLLFVQLVKRVQKLLERKTPFNRTV
RKAVLNWYGTKSLDRLLHFWSIGDGNRWPAHRDLLYRLHFRHANFLPEIIAALRLLSS
SPKELSQWPDFLTPLTSFRETIEGVVKLRLLTDPEQAISIVKKLSLSWEHVPFHLLHD
PRLAHFLIPHMSYEQLLQKWPRLSRLNSRVRPFAEQLLDKKKLKASNVPPVRLLLEDM
RLRKPKKVVNQLVLPSSLKNKNTFKFQCATTSFQKASFLHSVYEISFGLNKALGRRLH
ITLNLEQAYLGKYLSGPCRSLKYLDALVALGFGYFRSDRKVTVEFWHDRSGKLKALPW
TNEMSVSEAKTCCENQKVGKVRQSLNEILFRALLDMQNTFDVFLVLVPGAARGNPENN
SKCLAALMDKYREKRNSNAKFIMVSLRQRQRSMIYSSGRNENLLELCSLDKHTPRLIN
AFVRNKFY"
ORIGIN
1 attgttttta tcgcgaattg ccaacgctct gtacaagtga tgtacaacac gagttaaata
61 caaaacaaaa cgaacggata aaagttgcac gctgggcgaa tcgtgacaaa gagggcgtgg
121 caaatcgaaa tatagtatag atcaaatccc cagaaggcgc ggcataaacg taatatgcga
181 aaatcgctgc catgaaaaag ggcaagggat caagctccct tggatcgaag gaatcatcgg
241 ggagaccatc cacggcagtc ctggtgttca agaagtgcgc tagatttgcg gactcttcag
301 aatcggcgga gatccagcag gacggcaagg agcaactgcc tgagaggcaa gactcgctgg
361 atgccaagga attggtgggc atactaatag aagcacagga cgtgtggtta gccatcccgc
421 tgacgcatta aacggaatat ttaacttcta gctgtgataa ggaaattgct gcaggaatgg
481 aaaaagaggc gattagcaat cagccattaa aggatgagcc atcgaaagat gaacctaacc
541 aaagcgaggg cactgccatt tccaccatac cggcgattga taaactacgt cgcttctgct
601 ttattggatc cacggacgag cccgtctata ccacgcccgc actggatctt gttgtcgaga
661 acaatttcgc atcgctaaag gaactctgct cccaagtgag tgaagacgag ctggtcgagt
721 gcttgttgag cgttttgggc agcgaaccaa atgaggagca acctccccga cccgacgagc
781 cgctcctaat cctggctgtt ttctttacca cgtgcgaaga cgagaagaag cgaaatgcgg
841 tgcgtaatag attcaccgac ctgatcacca gcgaatcgga tcttctactg ttcgtccagt
901 tggtcaagcg agtccagaag ttgctcgaac gtaaaacgcc cttcaatcgc acagtgcgaa
961 aggccgtcct caactggtat ggcacgaaat cgcttgatcg ccttctccac ttctggtcaa
1021 taggcgatgg aaatcgttgg cctgcgcatc gcgatctact gtaccgcctc cattttcggc
1081 atgccaattt tttaccggaa atcattgctg ccttaaggct gctctcatca tcgccaaagg
1141 agctatcgca gtggcctgat tttttaacgc ccttgaccag ctttcgcgaa actattgagg
1201 gtgttgtgaa gcttcggcta ctcacggatc ccgaacaggc tatctccatt gtgaagaagt
1261 tgtcgctgag ctgggagcat gtgccttttc atttgcttca cgaccccagg ctggcgcatt
1321 ttcttattcc acacatgagc tatgagcaac ttcttcagaa atggccacgc ctctcgcgac
1381 ttaactcccg agtgcgcccc tttgctgagc aattgctgga taagaagaag cttaaggcga
1441 gcaatgttcc gcccgtacgt ctgctgttgg aggatatgcg tttgaggaag cccaaaaagg
1501 tggttaatca gttggtacta ccttcgtcac tcaaaaacaa gaatacattt aaattccagt
1561 gtgcaactac ttcgttccaa aaggcgagtt tcctgcatag cgtctacgaa atatcctttg
1621 gcctgaacaa ggcactcggt aggcgactgc acattaccct caatctggag caggcctatc
1681 tgggcaaata cctttctggt ccatgtcgtt cgctgaagta cttagacgcc ctggtggcat
1741 tgggttttgg ctatttccgc agcgaccgaa aggtgacggt ggagttttgg cacgaccgca
1801 gtggcaaatt gaaggcgttg ccgtggacaa atgagatgtc tgtttcagag gccaagacct
1861 gttgcgagaa tcagaaggtg ggcaaagtga ggcaatcgct aaatgaaatt ctgttcagag
1921 cgctattgga tatgcagaat acgttcgacg tgtttttggt actagtgccg ggtgccgcgc
1981 gaggaaatcc ggaaaataat tcaaagtgct tggctgctct aatggataag tatcgcgaaa
2041 agcgaaactc taatgctaaa ttcataatgg tgagcctgcg gcagcgtcaa cgctccatga
2101 tatattccag cggacgaaac gagaacttgt tagagttgtg cagcctggat aagcacacac
2161 cgcgtttgat taacgcattt gtccgcaata agttctacta gacggtgagc tgcattgcga
2221 atatcggacg acccatttca tcgcacaact gcaggcacaa agcagttcca tttgttgaag
2281 gacgatggcc atcggttagt tgccatcggc catctctctc gctttcatag atgcctggtc
2341 gttcggtcct ctcactccat tttcgaatag cttttgtgta acatattcat aggcccttgg
2401 tgtgtaatcg ttgtagaacc aggccaccaa ctcaatgcta cattcatatt tacatactac
2461 taattgtaat agttgcatcc cggaatccag aatttaaaat tcctatcggg ctagtaagat
2521 attatcgctc gttttgtgta atgaaattgt gtattagcat ttgtaatttt tactcgattt
2581 ggtgtattca ttttgttaaa attaaaccga atcaactgaa ctgaacttaa tctaaattca
2641 atttggattt aaaacaatct caatgaaatc gcaagcgcaa acaacaacaa aagaaccgac
2701 aaaaaaaaaa aaaaagaaaa acaaattgcc ttacaaacaa aaatgttagt aaaactttca
2761 ttttagttta gactttttca aaaattgaat actggaactg aaacacaatt tatggcattt
2821 agataaagtt aaagttaaat ataaactaat tgtatggcct atgtattgaa tattaatcta
2881 acgtaacatt
//