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Drosophila melanogaster uncharacterized protein, transcript variant C (CG10803), mRNA

NCBI Reference Sequence: NM_001272285.2

FASTA Graphics 

LOCUS       NM_001272285            2890 bp    mRNA    linear   INV 26-DEC-2023
DEFINITION  Drosophila melanogaster uncharacterized protein, transcript variant
            C (CG10803), mRNA.
ACCESSION   NM_001272285
VERSION     NM_001272285.2
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2890)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 2890)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 2890)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 2890)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 2890)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 2890)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 2890)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 2890)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 2890)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 2890)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 2890)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 2890)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 2890)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 2890)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 2890)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 2890)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 2890)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 2890)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 2890)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 2890)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 2890)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            On Jul 15, 2014 this sequence version replaced NM_001272285.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..2890
                     /gene="CG10803"
                     /locus_tag="Dmel_CG10803"
                     /gene_synonym="Dmel\CG10803; rop-1"
                     /map="3D4-3D4"
                     /db_xref="FLYBASE:FBgn0029666"
                     /db_xref="GeneID:31320"
     CDS             477..2201
                     /gene="CG10803"
                     /locus_tag="Dmel_CG10803"
                     /gene_synonym="Dmel\CG10803; rop-1"
                     /note="CG10803 gene product from transcript CG10803-RC;
                     CG10803-PC"
                     /codon_start=1
                     /product="uncharacterized protein, isoform C"
                     /protein_id="NP_001259214.1"
                     /db_xref="FLYBASE:FBpp0304001"
                     /db_xref="GeneID:31320"
                     /db_xref="FLYBASE:FBgn0029666"
                     /translation="MEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKLRRFCFIG
                     STDEPVYTTPALDLVVENNFASLKELCSQVSEDELVECLLSVLGSEPNEEQPPRPDEP
                     LLILAVFFTTCEDEKKRNAVRNRFTDLITSESDLLLFVQLVKRVQKLLERKTPFNRTV
                     RKAVLNWYGTKSLDRLLHFWSIGDGNRWPAHRDLLYRLHFRHANFLPEIIAALRLLSS
                     SPKELSQWPDFLTPLTSFRETIEGVVKLRLLTDPEQAISIVKKLSLSWEHVPFHLLHD
                     PRLAHFLIPHMSYEQLLQKWPRLSRLNSRVRPFAEQLLDKKKLKASNVPPVRLLLEDM
                     RLRKPKKVVNQLVLPSSLKNKNTFKFQCATTSFQKASFLHSVYEISFGLNKALGRRLH
                     ITLNLEQAYLGKYLSGPCRSLKYLDALVALGFGYFRSDRKVTVEFWHDRSGKLKALPW
                     TNEMSVSEAKTCCENQKVGKVRQSLNEILFRALLDMQNTFDVFLVLVPGAARGNPENN
                     SKCLAALMDKYREKRNSNAKFIMVSLRQRQRSMIYSSGRNENLLELCSLDKHTPRLIN
                     AFVRNKFY"
ORIGIN      
        1 attgttttta tcgcgaattg ccaacgctct gtacaagtga tgtacaacac gagttaaata
       61 caaaacaaaa cgaacggata aaagttgcac gctgggcgaa tcgtgacaaa gagggcgtgg
      121 caaatcgaaa tatagtatag atcaaatccc cagaaggcgc ggcataaacg taatatgcga
      181 aaatcgctgc catgaaaaag ggcaagggat caagctccct tggatcgaag gaatcatcgg
      241 ggagaccatc cacggcagtc ctggtgttca agaagtgcgc tagatttgcg gactcttcag
      301 aatcggcgga gatccagcag gacggcaagg agcaactgcc tgagaggcaa gactcgctgg
      361 atgccaagga attggtgggc atactaatag aagcacagga cgtgtggtta gccatcccgc
      421 tgacgcatta aacggaatat ttaacttcta gctgtgataa ggaaattgct gcaggaatgg
      481 aaaaagaggc gattagcaat cagccattaa aggatgagcc atcgaaagat gaacctaacc
      541 aaagcgaggg cactgccatt tccaccatac cggcgattga taaactacgt cgcttctgct
      601 ttattggatc cacggacgag cccgtctata ccacgcccgc actggatctt gttgtcgaga
      661 acaatttcgc atcgctaaag gaactctgct cccaagtgag tgaagacgag ctggtcgagt
      721 gcttgttgag cgttttgggc agcgaaccaa atgaggagca acctccccga cccgacgagc
      781 cgctcctaat cctggctgtt ttctttacca cgtgcgaaga cgagaagaag cgaaatgcgg
      841 tgcgtaatag attcaccgac ctgatcacca gcgaatcgga tcttctactg ttcgtccagt
      901 tggtcaagcg agtccagaag ttgctcgaac gtaaaacgcc cttcaatcgc acagtgcgaa
      961 aggccgtcct caactggtat ggcacgaaat cgcttgatcg ccttctccac ttctggtcaa
     1021 taggcgatgg aaatcgttgg cctgcgcatc gcgatctact gtaccgcctc cattttcggc
     1081 atgccaattt tttaccggaa atcattgctg ccttaaggct gctctcatca tcgccaaagg
     1141 agctatcgca gtggcctgat tttttaacgc ccttgaccag ctttcgcgaa actattgagg
     1201 gtgttgtgaa gcttcggcta ctcacggatc ccgaacaggc tatctccatt gtgaagaagt
     1261 tgtcgctgag ctgggagcat gtgccttttc atttgcttca cgaccccagg ctggcgcatt
     1321 ttcttattcc acacatgagc tatgagcaac ttcttcagaa atggccacgc ctctcgcgac
     1381 ttaactcccg agtgcgcccc tttgctgagc aattgctgga taagaagaag cttaaggcga
     1441 gcaatgttcc gcccgtacgt ctgctgttgg aggatatgcg tttgaggaag cccaaaaagg
     1501 tggttaatca gttggtacta ccttcgtcac tcaaaaacaa gaatacattt aaattccagt
     1561 gtgcaactac ttcgttccaa aaggcgagtt tcctgcatag cgtctacgaa atatcctttg
     1621 gcctgaacaa ggcactcggt aggcgactgc acattaccct caatctggag caggcctatc
     1681 tgggcaaata cctttctggt ccatgtcgtt cgctgaagta cttagacgcc ctggtggcat
     1741 tgggttttgg ctatttccgc agcgaccgaa aggtgacggt ggagttttgg cacgaccgca
     1801 gtggcaaatt gaaggcgttg ccgtggacaa atgagatgtc tgtttcagag gccaagacct
     1861 gttgcgagaa tcagaaggtg ggcaaagtga ggcaatcgct aaatgaaatt ctgttcagag
     1921 cgctattgga tatgcagaat acgttcgacg tgtttttggt actagtgccg ggtgccgcgc
     1981 gaggaaatcc ggaaaataat tcaaagtgct tggctgctct aatggataag tatcgcgaaa
     2041 agcgaaactc taatgctaaa ttcataatgg tgagcctgcg gcagcgtcaa cgctccatga
     2101 tatattccag cggacgaaac gagaacttgt tagagttgtg cagcctggat aagcacacac
     2161 cgcgtttgat taacgcattt gtccgcaata agttctacta gacggtgagc tgcattgcga
     2221 atatcggacg acccatttca tcgcacaact gcaggcacaa agcagttcca tttgttgaag
     2281 gacgatggcc atcggttagt tgccatcggc catctctctc gctttcatag atgcctggtc
     2341 gttcggtcct ctcactccat tttcgaatag cttttgtgta acatattcat aggcccttgg
     2401 tgtgtaatcg ttgtagaacc aggccaccaa ctcaatgcta cattcatatt tacatactac
     2461 taattgtaat agttgcatcc cggaatccag aatttaaaat tcctatcggg ctagtaagat
     2521 attatcgctc gttttgtgta atgaaattgt gtattagcat ttgtaatttt tactcgattt
     2581 ggtgtattca ttttgttaaa attaaaccga atcaactgaa ctgaacttaa tctaaattca
     2641 atttggattt aaaacaatct caatgaaatc gcaagcgcaa acaacaacaa aagaaccgac
     2701 aaaaaaaaaa aaaaagaaaa acaaattgcc ttacaaacaa aaatgttagt aaaactttca
     2761 ttttagttta gactttttca aaaattgaat actggaactg aaacacaatt tatggcattt
     2821 agataaagtt aaagttaaat ataaactaat tgtatggcct atgtattgaa tattaatcta
     2881 acgtaacatt
//
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