LOCUS NM_001145537 653 bp mRNA linear ROD 06-AUG-2023
DEFINITION Mus musculus RIKEN cDNA 4930544D05 gene (4930544D05Rik), mRNA.
ACCESSION NM_001145537 XM_001003627 XM_001004767
VERSION NM_001145537.1
KEYWORDS RefSeq; RefSeq Select.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 653)
AUTHORS Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
Lenhard B and Wahlestedt C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 2 (bases 1 to 653)
AUTHORS Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
Suzuki H, Kawai J and Hayashizaki Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REMARK Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE 3 (bases 1 to 653)
AUTHORS Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 4 (bases 1 to 653)
AUTHORS Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
Hayashizaki Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5 (bases 1 to 653)
AUTHORS Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
Togawa Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 6 (bases 1 to 653)
AUTHORS Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 7 (bases 1 to 653)
AUTHORS Carninci P and Hayashizaki Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Methods Enzymol 303, 19-44 (1999)
PUBMED 10349636
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL592547.9.
On or before Mar 5, 2009 this sequence version replaced
XM_001003627.1, XM_001004767.1.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: SRR5189685.301155.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN00849381, SAMN00849384
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on conservation, expression
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-111 AL592547.9 18633-18743 c
112-312 AL592547.9 18333-18533 c
313-520 AL592547.9 18032-18239 c
521-653 AL592547.9 17747-17879 c
FEATURES Location/Qualifiers
source 1..653
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="11"
/map="11 43.14 cM"
gene 1..653
/gene="4930544D05Rik"
/note="RIKEN cDNA 4930544D05 gene"
/db_xref="GeneID:668433"
/db_xref="MGI:MGI:2148639"
exon 1..111
/gene="4930544D05Rik"
/inference="alignment:Splign:2.1.0"
CDS 46..561
/gene="4930544D05Rik"
/codon_start=1
/product="uncharacterized protein C17orf107 homolog"
/protein_id="NP_001139009.1"
/db_xref="CCDS:CCDS56785.1"
/db_xref="GeneID:668433"
/db_xref="MGI:MGI:2148639"
/translation="MKGIPSNLDTLLWVYHFHSSTEVALQPPLLSSLELAVAAAHEYL
VQRFRELKSQDPLESDKSPTQKATLGLVLREAAASIMSFGATLLEISALWLQQEVQRL
DGGNDCPGPAPDTGDPGRALARVALAAGQGIRQAGTAAGASARYLIQGAWLYLCGRER
LGKPQGVAQQQ"
exon 112..312
/gene="4930544D05Rik"
/inference="alignment:Splign:2.1.0"
exon 313..520
/gene="4930544D05Rik"
/inference="alignment:Splign:2.1.0"
exon 521..653
/gene="4930544D05Rik"
/inference="alignment:Splign:2.1.0"
ORIGIN
1 gccagtattg tcctggccct tctgcatata ccatctgttg cggacatgaa ggggattccc
61 agcaatttgg acaccctgct gtgggtctac cacttccaca gctccaccga ggtggcctta
121 cagcctccac ttctatcttc cctggaactt gctgtggccg cagctcacga atatctggtg
181 caaaggttca gagagcttaa gtcccaggac cccctggaat ccgacaagtc gcccacccag
241 aaggccaccc tagggctggt gctaagagaa gctgcagcca gcatcatgag ctttggagcc
301 accttgttag agatctcggc cctgtggctg cagcaggagg tgcagcgact ggacggcggc
361 aacgactgcc caggcccagc cccagacact ggggatcctg gtagggcgct ggcccgtgta
421 gccctggccg cagggcaggg gattcggcaa gctggaacgg cagctggcgc aagtgcccgg
481 tacctgatcc agggggcgtg gttgtacctg tgtggacgag agagactcgg gaaacctcaa
541 ggtgtcgccc agcagcagtg aggagaatgg gggaacagat aatccatcac tgtcccagtc
601 caaccctgtg tccaaataaa agtccagaac gggacaacac caggtcccta tgc
//