LOCUS NM_001085126 1180 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana binding partner of acd11 1 (BPA1), mRNA.
ACCESSION NM_001085126
VERSION NM_001085126.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1180)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1180)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1180)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1180)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
FEATURES Location/Qualifiers
source 1..1180
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1180
/gene="BPA1"
/locus_tag="AT5G16840"
/gene_synonym="binding partner of acd11 1; F5E19.180;
F5E19_180"
/db_xref="Araport:AT5G16840"
/db_xref="GeneID:831547"
/db_xref="TAIR:AT5G16840"
CDS 174..956
/gene="BPA1"
/locus_tag="AT5G16840"
/gene_synonym="binding partner of acd11 1; F5E19.180;
F5E19_180"
/inference="Similar to RNA sequence,
EST:INSD:EL216352.1,INSD:EL018008.1,INSD:AV556274.1,
INSD:AV557400.1,INSD:EL045320.1,INSD:EL206991.1,
INSD:AV809756.1,INSD:BP623746.1,INSD:AV806961.1,
INSD:BP789103.1,INSD:AV555250.1,INSD:CK120212.1,
INSD:ES126773.1,INSD:AV821068.1,INSD:BP571395.1,
INSD:BE521405.1,INSD:BP601628.1,INSD:EL074899.1,
INSD:EH865809.1,INSD:BP607473.1,INSD:EL208849.1,
INSD:BP615421.1,INSD:AV790277.1,INSD:DR208618.1,
INSD:BP785276.1,INSD:AV792784.1,INSD:EL269031.1,
INSD:AV789718.1,INSD:AV795001.1,INSD:AV532161.1,
INSD:DR362608.1,INSD:AV563442.1,INSD:EL984949.1,
INSD:EL986839.1,INSD:ES050019.1,INSD:CD531983.1,
INSD:BE520792.1,INSD:AV790000.1,INSD:BP597285.1,
INSD:AV560293.1,INSD:ES126632.1,INSD:AV559796.1,
INSD:DR208622.1,INSD:ES034907.1,INSD:CD531023.1,
INSD:AV819194.1,INSD:DR275681.1,INSD:BE520791.1,
INSD:EH883441.1,INSD:BP641707.1,INSD:BP571658.1,
INSD:DR375444.1,INSD:BP644981.1,INSD:BP633537.1,
INSD:DR208640.1,INSD:DR208643.1,INSD:T76012.1,
INSD:ES146558.1,INSD:EL032024.1,INSD:EL020871.1,
INSD:EH966529.1,INSD:BP589397.1,INSD:AV555043.1,
INSD:DR208653.1,INSD:BP633253.1,INSD:DR208638.1,
INSD:DR230654.1,INSD:EL301574.1,INSD:AA404808.1,
INSD:EL277331.1,INSD:BP669627.1,INSD:BP647381.1,
INSD:ES204119.1,INSD:BP622897.1"
/note="binding partner of acd11 1 (BPA1); FUNCTIONS IN:
oxidoreductase activity, nucleotide binding, nucleic acid
binding; INVOLVED IN: oxidation reduction; EXPRESSED IN:
25 plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Aldo/keto reductase
(InterPro:IPR001395), RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: RNA-binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT4G17720.1); Has 439 Blast hits to 439 proteins in
94 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi
- 117; Plants - 286; Viruses - 0; Other Eukaryotes - 12
(source: NCBI BLink)."
/codon_start=1
/product="binding partner of acd11 1"
/protein_id="NP_001078595.1"
/db_xref="GeneID:831547"
/db_xref="TAIR:AT5G16840"
/db_xref="Araport:AT5G16840"
/translation="MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS
AYVTFKETQGAETAVLLSGASIADQSVIIELAPNYSPPAAPHAETQSSGAESVVQKAE
DVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLV
NEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQA
AGEVGQKTKEKVEAEQPSQPAQSQQQLPEGYSPIHSSEYSKN"
ORIGIN
1 acacgttgag tgtgaggtgt catataaagc aaaatacact cttccctctc tatctatcta
61 cgcatcatcg atctcgaagt acgtttcggt tttcaggcca atctctgaat ctgcgtgaca
121 aaagcaacaa attacatatc tctctctctg cgcgacttcg aagatcaaca tccatggcgt
181 cacaggtaag gtcagtaaaa gttggcaatc tctcttcagg agcaactgag catgatatta
241 aagagttttt ctctttctct ggtgaagttg aaagcatcga tatccaaagc agtaacgagc
301 atagtgctta tgtcacattt aaagaaactc aaggagcaga gactgctgtg ctcttatctg
361 gagcgagtat tgccgatcaa tcagtcatca ttgagttggc tcccaactac agtccaccag
421 cagcccctca tgctgaaaca cagagcagcg gtgcagaatc tgttgtccag aaggcagaag
481 atgttgtgag cagcatgtta gcaaagggtt tcattcttgg gaaagatgct gtcggcaaag
541 caaaagcttt tgatgagaaa catggtttca cctcaaccgc caccgcagga gttgcttcac
601 tagaccaaaa aatcggtctt agccagaaac ttacagctgg aacaagcttg gtgaacgaaa
661 aaatcaaggc ggtggaccaa aactttcagg taacagagag gaccaagtct gtgtatgcag
721 ctgcggagca gactgtgagc agtgcaggaa gcgctgtgat gaagaaccgt tacgtgttaa
781 ctggtgtgag ctgggccgca ggagcattca atagagtggc tcaagcagct ggagaggttg
841 gacagaaaac aaaagagaag gttgaagctg agcaaccatc gcaaccagca cagtcgcagc
901 agcaactgcc agaagggtat tctccgattc attcgtccga atactcgaag aactaatatc
961 atcaagttaa acagtttcct ttgtttctcc ttgttggttt ctttgacatg gaagttggaa
1021 atctggtttg gtctttggga tgtaccatat aagctatgcc tggattttcc ctaccactat
1081 tagactatag tttgggtttt ttccaatata catatttaat aagttgacat ttaaatcttt
1141 ctttacccta aatgttacaa atccattttg ttcctagatt
//