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Arabidopsis thaliana binding partner of acd11 1 (BPA1), mRNA

NCBI Reference Sequence: NM_001085126.1

FASTA Graphics 

LOCUS       NM_001085126            1180 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana binding partner of acd11 1 (BPA1), mRNA.
ACCESSION   NM_001085126
VERSION     NM_001085126.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1180)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1180)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1180)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1180
                     /gene="BPA1"
                     /locus_tag="AT5G16840"
                     /gene_synonym="binding partner of acd11 1; F5E19.180;
                     F5E19_180"
                     /db_xref="Araport:AT5G16840"
                     /db_xref="GeneID:831547"
                     /db_xref="TAIR:AT5G16840"
     CDS             174..956
                     /gene="BPA1"
                     /locus_tag="AT5G16840"
                     /gene_synonym="binding partner of acd11 1; F5E19.180;
                     F5E19_180"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL216352.1,INSD:EL018008.1,INSD:AV556274.1,
                     INSD:AV557400.1,INSD:EL045320.1,INSD:EL206991.1,
                     INSD:AV809756.1,INSD:BP623746.1,INSD:AV806961.1,
                     INSD:BP789103.1,INSD:AV555250.1,INSD:CK120212.1,
                     INSD:ES126773.1,INSD:AV821068.1,INSD:BP571395.1,
                     INSD:BE521405.1,INSD:BP601628.1,INSD:EL074899.1,
                     INSD:EH865809.1,INSD:BP607473.1,INSD:EL208849.1,
                     INSD:BP615421.1,INSD:AV790277.1,INSD:DR208618.1,
                     INSD:BP785276.1,INSD:AV792784.1,INSD:EL269031.1,
                     INSD:AV789718.1,INSD:AV795001.1,INSD:AV532161.1,
                     INSD:DR362608.1,INSD:AV563442.1,INSD:EL984949.1,
                     INSD:EL986839.1,INSD:ES050019.1,INSD:CD531983.1,
                     INSD:BE520792.1,INSD:AV790000.1,INSD:BP597285.1,
                     INSD:AV560293.1,INSD:ES126632.1,INSD:AV559796.1,
                     INSD:DR208622.1,INSD:ES034907.1,INSD:CD531023.1,
                     INSD:AV819194.1,INSD:DR275681.1,INSD:BE520791.1,
                     INSD:EH883441.1,INSD:BP641707.1,INSD:BP571658.1,
                     INSD:DR375444.1,INSD:BP644981.1,INSD:BP633537.1,
                     INSD:DR208640.1,INSD:DR208643.1,INSD:T76012.1,
                     INSD:ES146558.1,INSD:EL032024.1,INSD:EL020871.1,
                     INSD:EH966529.1,INSD:BP589397.1,INSD:AV555043.1,
                     INSD:DR208653.1,INSD:BP633253.1,INSD:DR208638.1,
                     INSD:DR230654.1,INSD:EL301574.1,INSD:AA404808.1,
                     INSD:EL277331.1,INSD:BP669627.1,INSD:BP647381.1,
                     INSD:ES204119.1,INSD:BP622897.1"
                     /note="binding partner of acd11 1 (BPA1); FUNCTIONS IN:
                     oxidoreductase activity, nucleotide binding, nucleic acid
                     binding; INVOLVED IN: oxidation reduction; EXPRESSED IN:
                     25 plant structures; EXPRESSED DURING: 15 growth stages;
                     CONTAINS InterPro DOMAIN/s: Aldo/keto reductase
                     (InterPro:IPR001395), RNA recognition motif, RNP-1
                     (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
                     (InterPro:IPR012677); BEST Arabidopsis thaliana protein
                     match is: RNA-binding (RRM/RBD/RNP motifs) family protein
                     (TAIR:AT4G17720.1); Has 439 Blast hits to 439 proteins in
                     94 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi
                     - 117; Plants - 286; Viruses - 0; Other Eukaryotes - 12
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="binding partner of acd11 1"
                     /protein_id="NP_001078595.1"
                     /db_xref="GeneID:831547"
                     /db_xref="TAIR:AT5G16840"
                     /db_xref="Araport:AT5G16840"
                     /translation="MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS
                     AYVTFKETQGAETAVLLSGASIADQSVIIELAPNYSPPAAPHAETQSSGAESVVQKAE
                     DVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLV
                     NEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQA
                     AGEVGQKTKEKVEAEQPSQPAQSQQQLPEGYSPIHSSEYSKN"
ORIGIN      
        1 acacgttgag tgtgaggtgt catataaagc aaaatacact cttccctctc tatctatcta
       61 cgcatcatcg atctcgaagt acgtttcggt tttcaggcca atctctgaat ctgcgtgaca
      121 aaagcaacaa attacatatc tctctctctg cgcgacttcg aagatcaaca tccatggcgt
      181 cacaggtaag gtcagtaaaa gttggcaatc tctcttcagg agcaactgag catgatatta
      241 aagagttttt ctctttctct ggtgaagttg aaagcatcga tatccaaagc agtaacgagc
      301 atagtgctta tgtcacattt aaagaaactc aaggagcaga gactgctgtg ctcttatctg
      361 gagcgagtat tgccgatcaa tcagtcatca ttgagttggc tcccaactac agtccaccag
      421 cagcccctca tgctgaaaca cagagcagcg gtgcagaatc tgttgtccag aaggcagaag
      481 atgttgtgag cagcatgtta gcaaagggtt tcattcttgg gaaagatgct gtcggcaaag
      541 caaaagcttt tgatgagaaa catggtttca cctcaaccgc caccgcagga gttgcttcac
      601 tagaccaaaa aatcggtctt agccagaaac ttacagctgg aacaagcttg gtgaacgaaa
      661 aaatcaaggc ggtggaccaa aactttcagg taacagagag gaccaagtct gtgtatgcag
      721 ctgcggagca gactgtgagc agtgcaggaa gcgctgtgat gaagaaccgt tacgtgttaa
      781 ctggtgtgag ctgggccgca ggagcattca atagagtggc tcaagcagct ggagaggttg
      841 gacagaaaac aaaagagaag gttgaagctg agcaaccatc gcaaccagca cagtcgcagc
      901 agcaactgcc agaagggtat tctccgattc attcgtccga atactcgaag aactaatatc
      961 atcaagttaa acagtttcct ttgtttctcc ttgttggttt ctttgacatg gaagttggaa
     1021 atctggtttg gtctttggga tgtaccatat aagctatgcc tggattttcc ctaccactat
     1081 tagactatag tttgggtttt ttccaatata catatttaat aagttgacat ttaaatcttt
     1141 ctttacccta aatgttacaa atccattttg ttcctagatt
//
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Reference sequence information

More about the BPA1 gene

  • BPA1 gene
    Also Known As: AT5G16840, F5E19.180, F...

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