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Danio rerio YOD1 deubiquitinase (yod1), mRNA

NCBI Reference Sequence: NM_001017716.2

FASTA Graphics 

LOCUS       NM_001017716            1255 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio YOD1 deubiquitinase (yod1), mRNA.
ACCESSION   NM_001017716 XM_677806 XM_704646 XM_704647
VERSION     NM_001017716.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1255)
  AUTHORS   Chen,X., Fan,S., Zhu,C., Liao,Q., Tang,J., Yu,G., Cai,X.,
            Ouyang,G., Xiao,W. and Liu,X.
  TITLE     Zebrafish sirt5 Negatively Regulates Antiviral Innate Immunity by
            Attenuating Phosphorylation and Ubiquitination of mavs
  JOURNAL   J Immunol 209 (6), 1165-1172 (2022)
   PUBMED   36002231
REFERENCE   2  (bases 1 to 1255)
  AUTHORS   Elkon,R., Milon,B., Morrison,L., Shah,M., Vijayakumar,S.,
            Racherla,M., Leitch,C.C., Silipino,L., Hadi,S., Weiss-Gayet,M.,
            Barras,E., Schmid,C.D., Ait-Lounis,A., Barnes,A., Song,Y.,
            Eisenman,D.J., Eliyahu,E., Frolenkov,G.I., Strome,S.E., Durand,B.,
            Zaghloul,N.A., Jones,S.M., Reith,W. and Hertzano,R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1255)
  AUTHORS   Tse,W.K., Eisenhaber,B., Ho,S.H., Ng,Q., Eisenhaber,F. and
            Jiang,Y.J.
  TITLE     Genome-wide loss-of-function analysis of deubiquitylating enzymes
            for zebrafish development
  JOURNAL   BMC Genomics 10, 637 (2009)
   PUBMED   20040115
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC093247.1.
            
            On Aug 31, 2012 this sequence version replaced NM_001017716.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC093247.1, CK865078.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA3505374,
                                           SAMEA3505393 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1255              BC093247.1         4-1258
FEATURES             Location/Qualifiers
     source          1..1255
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="11"
                     /map="11"
     gene            1..1255
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /note="YOD1 deubiquitinase"
                     /db_xref="GeneID:550411"
                     /db_xref="ZFIN:ZDB-GENE-050417-217"
     exon            1..44
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /inference="alignment:Splign:2.1.0"
     exon            45..269
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /inference="alignment:Splign:2.1.0"
     CDS             62..967
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /EC_number="3.4.19.12"
                     /note="YOD1 OTU deubiquinating enzyme 1 homolog"
                     /codon_start=1
                     /product="ubiquitin thioesterase OTU1"
                     /protein_id="NP_001017716.1"
                     /db_xref="GeneID:550411"
                     /db_xref="ZFIN:ZDB-GENE-050417-217"
                     /translation="MLRLRCKAKNGTHLMQGLTHQSCVQELKDKIEELTGIPCDVQKI
                     MVGYPPSSLDLRNGEAHLKDYPIKSGDTLIVEEEKNKPKPPVQPTVTKGPSFEVTPVV
                     ERRVVPADNSCLFTSVNYVMEGGVYDPACASEMRGLIAQIVASDPTAYSEAVLGKTNE
                     EYCTWIRRDDTWGGAIEVSILSKFYQCEICVVDTQTVRVDRFGEDAGYTKRVLLIYDG
                     IHYDPLQKVLPGSDVPAQTVFSTVDDVILAQALELADEARRKRQFTDVNRFALRCMVC
                     QTGLVGQKEAREHAKETGHTNFGEV"
     misc_feature    74..310
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
                     Region: UBX-like"
     misc_feature    380..400
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
                     Region: Cys-loop. /evidence=ECO:0000250|UniProtKB:Q5VVQ6"
     misc_feature    557..589
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
                     Region: Variable-loop.
                     /evidence=ECO:0000250|UniProtKB:Q5VVQ6"
     misc_feature    707..721
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
                     Region: His-loop. /evidence=ECO:0000250|UniProtKB:Q5VVQ6"
     misc_feature    791..808
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
                     Region: S2 site. /evidence=ECO:0000250|UniProtKB:Q5VVQ6"
     exon            270..1233
                     /gene="yod1"
                     /gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcacggtca gtgtgtctgt tgttgtttaa agagacgctc ggcgaagtga acaggtacag
       61 gatgctgcgt ctgcgttgca aagccaagaa cgggacccat ctgatgcagg gccttacaca
      121 ccaatcttgt gttcaggaac tcaaagataa gatcgaggag ctgacaggga taccatgcga
      181 tgtacagaaa atcatggtcg gttatccacc gtccagcctg gatctacgca acggtgaagc
      241 ccatctcaaa gactacccta tcaaatcagg agacactttg attgtagagg aggagaagaa
      301 caaacccaaa cccccagtgc aacccactgt gaccaaaggg cccagctttg aagtgacccc
      361 agtcgtcgag cgccgcgtag tgcccgccga caactcctgt ttgtttacta gtgtgaacta
      421 cgtaatggaa ggcggtgtgt acgacccggc ctgcgcgtcc gaaatgcgtg gtctcatcgc
      481 acaaatagta gccagcgacc ccaccgcgta ttcagaagcc gttttgggca aaaccaatga
      541 agaatactgc acatggatcc gtcgagatga cacgtgggga ggcgctattg aagtttccat
      601 cctctccaag ttctaccaat gtgaaatctg cgttgtggac actcaaacgg tacgcgtgga
      661 tcgattcggc gaggatgctg ggtacaccaa acgagtgctg cttatttatg acgggattca
      721 ttacgatccg cttcagaagg tgttgcccgg ttctgatgtc cctgcgcaga ccgtgttctc
      781 caccgtagat gatgttattt tagctcaagc gctggaacta gcggacgaag cacggaggaa
      841 acggcagttt acagatgtca accggtttgc tttgcgctgt atggtgtgcc agactggcct
      901 ggtagggcag aaggaggcaa gggaacatgc caaggagacg ggccacacca attttggaga
      961 ggtgtgatgt tctcggctcc atatttaaaa tcaccgccgc gtcactgcca cgccatctga
     1021 catggtacct gctctttcac tgctgcctgt tccagctcag tacagtcctc tacctcacat
     1081 tgtcttcagg agactttcac gtgtcgagtt acccaagaat acagtgttct tttggtttca
     1141 gtttactctt gaagtattca attgtgcttt ttttttcttt gcctgacgtg aggacaagcc
     1201 gtctgtttaa accaaaatgt ttaaaaggga tttaaaaaaa aaaaaaaaaa aaaaa
//
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