LOCUS NM_001017716 1255 bp mRNA linear VRT 16-SEP-2024
DEFINITION Danio rerio YOD1 deubiquitinase (yod1), mRNA.
ACCESSION NM_001017716 XM_677806 XM_704646 XM_704647
VERSION NM_001017716.2
KEYWORDS RefSeq.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1255)
AUTHORS Chen,X., Fan,S., Zhu,C., Liao,Q., Tang,J., Yu,G., Cai,X.,
Ouyang,G., Xiao,W. and Liu,X.
TITLE Zebrafish sirt5 Negatively Regulates Antiviral Innate Immunity by
Attenuating Phosphorylation and Ubiquitination of mavs
JOURNAL J Immunol 209 (6), 1165-1172 (2022)
PUBMED 36002231
REFERENCE 2 (bases 1 to 1255)
AUTHORS Elkon,R., Milon,B., Morrison,L., Shah,M., Vijayakumar,S.,
Racherla,M., Leitch,C.C., Silipino,L., Hadi,S., Weiss-Gayet,M.,
Barras,E., Schmid,C.D., Ait-Lounis,A., Barnes,A., Song,Y.,
Eisenman,D.J., Eliyahu,E., Frolenkov,G.I., Strome,S.E., Durand,B.,
Zaghloul,N.A., Jones,S.M., Reith,W. and Hertzano,R.
TITLE RFX transcription factors are essential for hearing in mice
JOURNAL Nat Commun 6, 8549 (2015)
PUBMED 26469318
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 1255)
AUTHORS Tse,W.K., Eisenhaber,B., Ho,S.H., Ng,Q., Eisenhaber,F. and
Jiang,Y.J.
TITLE Genome-wide loss-of-function analysis of deubiquitylating enzymes
for zebrafish development
JOURNAL BMC Genomics 10, 637 (2009)
PUBMED 20040115
REMARK Publication Status: Online-Only
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from BC093247.1.
On Aug 31, 2012 this sequence version replaced NM_001017716.1.
##Evidence-Data-START##
Transcript exon combination :: BC093247.1, CK865078.1 [ECO:0000332]
RNAseq introns :: mixed sample support SAMEA3505374,
SAMEA3505393 [ECO:0006172]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-1255 BC093247.1 4-1258
FEATURES Location/Qualifiers
source 1..1255
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/chromosome="11"
/map="11"
gene 1..1255
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/note="YOD1 deubiquitinase"
/db_xref="GeneID:550411"
/db_xref="ZFIN:ZDB-GENE-050417-217"
exon 1..44
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/inference="alignment:Splign:2.1.0"
exon 45..269
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/inference="alignment:Splign:2.1.0"
CDS 62..967
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/EC_number="3.4.19.12"
/note="YOD1 OTU deubiquinating enzyme 1 homolog"
/codon_start=1
/product="ubiquitin thioesterase OTU1"
/protein_id="NP_001017716.1"
/db_xref="GeneID:550411"
/db_xref="ZFIN:ZDB-GENE-050417-217"
/translation="MLRLRCKAKNGTHLMQGLTHQSCVQELKDKIEELTGIPCDVQKI
MVGYPPSSLDLRNGEAHLKDYPIKSGDTLIVEEEKNKPKPPVQPTVTKGPSFEVTPVV
ERRVVPADNSCLFTSVNYVMEGGVYDPACASEMRGLIAQIVASDPTAYSEAVLGKTNE
EYCTWIRRDDTWGGAIEVSILSKFYQCEICVVDTQTVRVDRFGEDAGYTKRVLLIYDG
IHYDPLQKVLPGSDVPAQTVFSTVDDVILAQALELADEARRKRQFTDVNRFALRCMVC
QTGLVGQKEAREHAKETGHTNFGEV"
misc_feature 74..310
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
Region: UBX-like"
misc_feature 380..400
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
Region: Cys-loop. /evidence=ECO:0000250|UniProtKB:Q5VVQ6"
misc_feature 557..589
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
Region: Variable-loop.
/evidence=ECO:0000250|UniProtKB:Q5VVQ6"
misc_feature 707..721
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
Region: His-loop. /evidence=ECO:0000250|UniProtKB:Q5VVQ6"
misc_feature 791..808
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/note="propagated from UniProtKB/Swiss-Prot (Q567B1.1);
Region: S2 site. /evidence=ECO:0000250|UniProtKB:Q5VVQ6"
exon 270..1233
/gene="yod1"
/gene_synonym="fe01a10; wu:fe01a10; zgc:112182"
/inference="alignment:Splign:2.1.0"
ORIGIN
1 tgcacggtca gtgtgtctgt tgttgtttaa agagacgctc ggcgaagtga acaggtacag
61 gatgctgcgt ctgcgttgca aagccaagaa cgggacccat ctgatgcagg gccttacaca
121 ccaatcttgt gttcaggaac tcaaagataa gatcgaggag ctgacaggga taccatgcga
181 tgtacagaaa atcatggtcg gttatccacc gtccagcctg gatctacgca acggtgaagc
241 ccatctcaaa gactacccta tcaaatcagg agacactttg attgtagagg aggagaagaa
301 caaacccaaa cccccagtgc aacccactgt gaccaaaggg cccagctttg aagtgacccc
361 agtcgtcgag cgccgcgtag tgcccgccga caactcctgt ttgtttacta gtgtgaacta
421 cgtaatggaa ggcggtgtgt acgacccggc ctgcgcgtcc gaaatgcgtg gtctcatcgc
481 acaaatagta gccagcgacc ccaccgcgta ttcagaagcc gttttgggca aaaccaatga
541 agaatactgc acatggatcc gtcgagatga cacgtgggga ggcgctattg aagtttccat
601 cctctccaag ttctaccaat gtgaaatctg cgttgtggac actcaaacgg tacgcgtgga
661 tcgattcggc gaggatgctg ggtacaccaa acgagtgctg cttatttatg acgggattca
721 ttacgatccg cttcagaagg tgttgcccgg ttctgatgtc cctgcgcaga ccgtgttctc
781 caccgtagat gatgttattt tagctcaagc gctggaacta gcggacgaag cacggaggaa
841 acggcagttt acagatgtca accggtttgc tttgcgctgt atggtgtgcc agactggcct
901 ggtagggcag aaggaggcaa gggaacatgc caaggagacg ggccacacca attttggaga
961 ggtgtgatgt tctcggctcc atatttaaaa tcaccgccgc gtcactgcca cgccatctga
1021 catggtacct gctctttcac tgctgcctgt tccagctcag tacagtcctc tacctcacat
1081 tgtcttcagg agactttcac gtgtcgagtt acccaagaat acagtgttct tttggtttca
1141 gtttactctt gaagtattca attgtgcttt ttttttcttt gcctgacgtg aggacaagcc
1201 gtctgtttaa accaaaatgt ttaaaaggga tttaaaaaaa aaaaaaaaaa aaaaa
//