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Homo sapiens ATAC-STARR-seq lymphoblastoid silent region 20576 (LOC130003075) on chromosome 9

NCBI Reference Sequence: NG_182521.1

FASTA Graphics 

LOCUS       NG_182521                260 bp    DNA     linear   CON 17-MAY-2023
DEFINITION  Homo sapiens ATAC-STARR-seq lymphoblastoid silent region 20576
            (LOC130003075) on chromosome 9.
ACCESSION   NG_182521
VERSION     NG_182521.1
DBLINK      BioProject: PRJNA343958
KEYWORDS    RefSeq; RefSeqFE.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Hansen TJ and Hodges E.
  TITLE     ATAC-STARR-seq reveals transcription factor-bound activators and
            silencers across the chromatin accessible human genome
  JOURNAL   Genome Res 32 (8), 1529-1541 (2022)
   PUBMED   35858748
  REMARK    Publication Status: Available-Online prior to print
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AL807752.10.
            
            Summary: This genomic sequence represents an accessible chromatin
            region that was validated as a silencer based on its ability to
            repress an origin of replication minimal core promoter by the
            ATAC-STARR-seq (assay for transposase-accessible chromatin with
            self-transcribing active regulatory region sequencing) massively
            parallel reporter assay (MPRA) in GM12878 lymphoblastoid cells.
            [provided by RefSeq, May 2023].
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-260               AL807752.10        147572-147831
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Homo sapiens"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9"
     misc_feature    101..160
                     /standard_name="ATAC-STARR-seq lymphoblastoid silent
                     region 20576"
                     /note="Region: biological region"
                     /db_xref="GeneID:130003075"
     regulatory      101..160
                     /regulatory_class="silencer"
                     /experiment="EXISTENCE:reporter gene assay evidence
                     [ECO:0000049][PMID:35858748]"
                     /note="silent region_20576"
                     /function="represses an Ori minimal core promoter by
                     ATAC-STARR-seq in GM12878 lymphoblastoid cells
                     {active_cell/tissue: GM12878}"
                     /db_xref="GeneID:130003075"
CONTIG      join(AL807752.10:147572..147831)
//
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