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Macaca mulatta isolate AG07107 chromosome X, Mmul_10, whole genome shotgun sequence

NCBI Reference Sequence: NC_041774.1

FASTA Graphics 

LOCUS       NC_041774               7785 bp    DNA     linear   CON 26-APR-2019
DEFINITION  Macaca mulatta isolate AG07107 chromosome X, Mmul_10, whole genome
            shotgun sequence.
ACCESSION   NC_041774 REGION: 48787063..48794847
VERSION     NC_041774.1
DBLINK      BioProject: PRJNA528504
            BioSample: SAMN09435472
            Assembly: GCF_003339765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CM014356.1.
            Assembly name: Mmul_10
            The genomic sequence for this RefSeq record is from the
            whole-genome assembly released by The Genome Institute at
            Washington University School of Medicine on 2019/02/13. The
            original whole-genome shotgun project has the accession
            QNVO00000000.2.
            
            ##Genome-Assembly-Data-START##
            Assembly Provider     :: The Genome Institute at Washington
                                     University School of Medicine
            Assembly Method       :: HGAP4_SMRT_Link v. 5.0.1.9585
            Assembly Name         :: Macaca mulatta 2.0
            Genome Coverage       :: 66x
            Sequencing Technology :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Macaca mulatta Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7785
                     /organism="Macaca mulatta"
                     /mol_type="genomic DNA"
                     /isolate="AG07107"
                     /bio_material="Coriell:AG07107"
                     /db_xref="taxon:9544"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="fibroblast"
     gene            1..7785
                     /gene="GATA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /db_xref="GeneID:714631"
     mRNA            join(1..116,4582..4820,5336..5713,5815..5960,6661..6786,
                     7267..7785)
                     /gene="GATA1"
                     /product="GATA binding protein 1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 23 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /transcript_id="XM_015127373.2"
                     /db_xref="GeneID:714631"
     CDS             join(4601..4820,5336..5713,5815..5960,6661..6786,
                     7267..7638)
                     /gene="GATA1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /codon_start=1
                     /product="erythroid transcription factor"
                     /protein_id="XP_014982859.2"
                     /db_xref="GeneID:714631"
                     /translation="MEFPGLGTLGTSEPLPQFVDPALVSSTPESGVFFPSGPEGLDAA
                     ASSTGPSTATAAAAALAYYRDAEAYRHSPVFQVYPLLNCMEGIPGGSPYASWAYGKTG
                     LYPASTVCPTREDSPPQATEDPDGKGSTSFLETLKTERLSPDLLTLGPALPSSLPIPN
                     SAYGGPDFSSTFFSPTGSPLSSAAYSSPKLRGTLPLPPCEARECVNCGATATPLWRRD
                     RTGHYLCNACGLYHKMNGQNRPLIRPKKRLIVSKRAGTQCTNCQTTTTTLWRRNASGD
                     PVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRGSSLGGTGAAEGPAGGF
                     MVVAGGSGSGNCGEVTSGLTLGPPGTAHLYQGLGPVVLSGPVSHLMPFPGPLLGSPTG
                     SFPTGPMPPTTSATVVAPLSS"
ORIGIN      
        1 gggagggagg gaggaaggga gcctcaaagg ccaaggccag ccaggacacc ccctgggatc
       61 acactgagct tgccacatcc ccaaggcggc tgaaccctct gcaacaacca gcccaggtca
      121 gtctcagccc ccactgagct cccaccaagg caaccctggg cctgctacct ctacctttat
      181 ggctacccac ccctcagctt gctccaggct ccccaaccca cggctggtcc ccaaagtgtc
      241 agccagccct gaatcccttt acagctcctc agacccatct gtctttccaa ctcccatttc
      301 taccccaaat ctacccccta aaccccacct ctttctgccc tcccatccat tccgtccaag
      361 atatctatat cctctggatc ctttcacttt gctccctata cccctaggtc tgtctcccct
      421 aaacactaac tctgcctctc aaaacatgac tttatcccct gaaatccttt ccctgtccca
      481 tatctgattt ccactcaccc acacttgtct ctgtcttcct gacttctcct ccaaacctca
      541 cttttctgct cccaaacccc ttatccgctc tataacacct tgtctttgcc ccactctctc
      601 tgagccccca aacctgtctc tgatctgcca aaccctagct ccatcctctt accccatctc
      661 tccctctcaa acccactctt tgttcccaat gacttctctc tgatctcccc aaaccatttc
      721 tctctcccaa ctccctgcct actcagtaaa atatctttgt cactccaaat accaagtcga
      781 ctccccaaaa tctgttctgc cgcatgaacc ctcatgtctg ccttcccaaa accctatctc
      841 agccctaaaa cacatctctt tgtctccctg aatctctcca gctccaagtc tttctctact
      901 ccaattctat cttggcttct caaactcccc tttaatcact agccacattt ctgtctccaa
      961 acagatcttt cactcctaaa ctccatctct cctccagaaa aacccttgaa ctccccagat
     1021 ttttctacga ccctcagaat ctgactccca cactactcct caactttatt tctgactctc
     1081 aaacttcgcc tctgatcccc caacctcgtc tgttttcaca acctattcct gagcccaaaa
     1141 tgtgtcgctg aacttccaag cttgtctctg ctccataaac ccccatatct gccttccccc
     1201 aaactccatg gctacacccc aaacctctct ctgacttaac cccatatctg accctcaaac
     1261 tccacctcta tctcccccca agccccgtat ctgctcccta gaccttatat ctgctccctt
     1321 cagccccgtg agaccctccc ttgagggcta agattggaat gttacctggg gtgaggggct
     1381 ggggccgagg gagagtggag ggtgccggct gctgcctgct gccaccgttg gggcaacact
     1441 tactctagtg gggcagctga taaggagctt tcatatcccc cagcctcgag ataaacttta
     1501 tctctgtccg gagagtgata actgggggtg agggggctgg gcccctgcca tgggaggggt
     1561 gggcagccct ggactcacca aggtgtgaag tgcaggggtt gggggcagtg gggctagagg
     1621 gagatcatgg tgtgtaaggt ggggttgagg ggatgaggga atagtaggtg aaagaaagag
     1681 agcaggagac acacaatgag acagggacgg gaaggagaaa cagagggaga gatgggaaga
     1741 gagagacaga gacacagaga caaagagcaa gagacaaaag agacagaaag agaaaggaaa
     1801 aacagagaga gagaaactta atgagtaaga gacagagaca gacaaacggc cggagaaaaa
     1861 gaaaaaaaga cccaggagca gaaaaggaga tagaaatgca gagatacccg caggtagcac
     1921 tgtgaagaga cagagactaa cacagaatta gagacagaga ggaaagagat agagaccaag
     1981 atggggaagc aagacactct cttcagagag caacagcagg caccctgggg ctgtgaaggt
     2041 gttggtggtg ggcacacttg tggcccatca ctttcctagc acaatcccca agcctgggcc
     2101 tgccccttag cctgtctata ccatgggtca tgtaagcagg ggtgaagggc agtttgaaga
     2161 cagccttcta gtctagccct gtcactccac cctacagaca cagaaacaga gcaggccagc
     2221 acagtagggc cagggccagc attccaggct ccttatcccg agctgcatgt ggctgggtac
     2281 ggttaggggt atgagactac tacgaggcac atggacataa ggtcagagga cccaaagaga
     2341 ggggaacaga gggaagagac aaacaagcgg gaagaatggg agacatgcag agatgttcag
     2401 agagatagag gaaagggaga aagcaagagt aacagagaga gccagagaga gaaacatgga
     2461 aagacagaaa acaagacaga aaatcatcaa acatttataa aagcacagaa agaggccagg
     2521 cgcggtggct cacacctata atctcagcac tttgggaggc catggtgggc agatcacttg
     2581 aggtcaggag ttcaagatca gcctggccaa catggcaaaa ccccatctct actaaaaata
     2641 caaaaattag ctgggtgtgg tggcacgtgc ctgtaatccc agctactagg gaggctgagg
     2701 catgagaatc acttgaacct gggaggctga ggttgcagtg agccaagatc gcaccactgc
     2761 acgccagcct gggtgacaga gtgagattct gttttaaaaa aaaaaaaaaa agcacaaaag
     2821 gagaagacaa gacaagctat atcatagaaa cacagaaagc tgggggagct acagagtcag
     2881 acttgagagg aaacagtcag gggaaagagc cctgggggac agagaggtgg agagctagat
     2941 gacagagaca cacacaaggc aaaatagagg caaagggcca tcccacaagt ctcagctcag
     3001 ctgcagccca tcaccacccc caatacagca gatggggaaa ctgaggcctg ggaactgaaa
     3061 gagcctgaaa gcagaactat ggtgggcctc ccaaggggaa agggtaccgg tagaggtacc
     3121 tcccacctgt caccctcttc agaggaagtc agtggccttg gggtgatttc aaaagttggg
     3181 cggggaaggc agagataagc agtggggggt actgaccccc ccacaccaag aagtacggag
     3241 gaactaaggg ggccttctgt ctgtagatgc aacggaggtg gagggaggag ggagtcaagc
     3301 ccggaaacca tggggtttct gagaaagtta gagggcaaga tacaacagat agggatgaag
     3361 ttggggagca gaggatggtg aaccccaaag tcctggggga agtgaccaag aggctcaagg
     3421 gactctggtc ctgcacccca tcccaccttc acccagactc ttctagaggg ggagggaaga
     3481 aagaatgggg ggatggggag aataagagga agtggaggag gggaggagag gagatgggga
     3541 aagggagaaa aagatgaaca gaaaagggag agaggagaag gatgaagaaa atggagggga
     3601 ggagaaaatg agtagtagga gaaaggagtg gagagtagat gtagacaggt gaagagaggc
     3661 cgaacatggt gactcatacc tgtaatccca gtactttggg aggctgaggt gggaagatca
     3721 cttgaggcca ggagttcaag accagcctgg gcaacatagt tataccgcat ctctacaaaa
     3781 aaaaccaaaa actagccagg cgtggtgaca tacacctgta gttccagtta ctcaggaggc
     3841 tgagacagga ggatcacttg cgtctgggag gcagtgggtg tagtgagccg agatcatgcc
     3901 actgcactcc agcctggcaa cagaggagac cctgcctcaa aaaaaaaaag tggtgtgtgc
     3961 ggatggggga gagggagata aggtgtgtga ggaagatata aaaggagaat gaagacaaaa
     4021 agaggaggac aaggaagagg ggaaacagga aaggaaaagg aggaggtcaa tgaggaaaag
     4081 aagaaggtag agaagaaaaa ggaagtagga gaggagaatg agaaaagagt ggaaagagaa
     4141 ggaagtgggg aagaggggga caaagaagag atgggaagaa gagagatggg agaaagaggg
     4201 ggaaaaggga agagggggag gaagagaatg gaaggaagaa gggagaggta ggagcagatg
     4261 aaagtggagg aagagcgaga ggagggagga gaggaaagac aaacggggca agatagggag
     4321 aatgaggagg aagatgaaag gaggggcaca caggagtgga agggggagat gcaggaggaa
     4381 agagaggaga gggaggaaga gaagaagggg aaggagaagg gagactaagg tgaggaggag
     4441 gaggggaatg ggaggtggga aggaggaata tggaaactga ggtgatggag tgggaggagg
     4501 gggaaggagg gaagaggagc agatgaaagg aggtgaagga cagaggattt ctgtgtctga
     4561 ggaccccttc tgtcttcgca ggttaacccc cagaggctcc atggagttcc ctggcctggg
     4621 gaccctgggg acctcagagc ccctccccca gtttgtggat cctgctctgg tgtcctccac
     4681 gccagaatca ggggttttct tcccctctgg gcctgagggc ttggatgcag cagcttcctc
     4741 caccggccca agcacagcca ccgctgcagc tgcagcgctg gcctactaca gggacgctga
     4801 ggcctacaga cactctccag gtaactccat tgggtggctg tcttggcatt ggctgagtgc
     4861 tgttggggtt gccatggaga tccttggcta ggtcagagta ccactgtgag gatatctcag
     4921 aaaaggctgg aagcttctca aatggatgtg ccgaccactt tccctagtta agggcagacc
     4981 tgggaattcc aatgctcctc aacctgccac attggggcga ccacactgaa aggcaatatt
     5041 ggaagtatgt ggtggttgcc ctagttgttg agtgatctgt ggagctccaa atcccaacag
     5101 tcatcctcaa aagcccactt ggaaatggtc ataggttatt gcagaggcca cactgaccag
     5161 tgggggtcag gatccaggaa gcatccaatg gccagcagct gttctggcag cctgtggaaa
     5221 agctgggaac ttggccacca tgttgggggt gccgggaacc actgcaccct gacatgggct
     5281 gaccctagac tgattttgcc tcttctttcc tctgtcccta cctgcccccc aacagtcttt
     5341 caggtgtacc cattgctcaa ctgtatggag gggatcccag ggggctcacc atatgccagc
     5401 tgggcctacg gcaagacggg gctctaccct gcctcaactg tgtgtcccac ccgcgaggac
     5461 tcccctcccc aggccacgga agatccagat ggaaaaggca gcaccagctt cctggagact
     5521 ttgaagacag agcggctgag cccagacctc ttgaccctgg ggcctgcact gccttcatca
     5581 ctccctatcc ccaatagtgc ttatgggggc cctgactttt ccagtacctt cttttctccc
     5641 accgggagcc ccctcagttc agcagcttat tcctctccca agcttcgtgg aactctgccc
     5701 ctgcctccct gtggtgagga actcaaaaaa ggacagggaa gtcgaggtgg gaagggtggc
     5761 tcaaagtaaa gctgagctaa gcctagctcc ctcttctcct cttcacccca ccagaggcca
     5821 gggagtgtgt caactgcgga gcaacagcca ctccactgtg gcggagggac aggacaggcc
     5881 actatctatg caatgcctgc ggcctctatc acaagatgaa tgggcagaac aggcccctca
     5941 tccggcccaa gaagcgcctg gtaagaccac agacctgctt caccatatac acaggaaccc
     6001 ctgtcctcat cctgtacaag cagccacctc ttctcattgt ataggaacgc tgttctcatg
     6061 cttacaggaa gctactgcag gccaccctgt acaggaaccc ctgtcccaat atcacatgga
     6121 aacctttgcc ttcatcctac acaggaaaat ttcattccgt atggaaatcc ttgccctcac
     6181 cctacataag aactcttgcc ctttccctgt acaggaaccc agatctatag aagctcctat
     6241 cctcaaccta ccctcatagg cttcaaacag aaacctttgt cctcaccctg tacaccagtg
     6301 ttttcgtcct tggcttcaca ctggaatcac cccaggtccc ttctcccaga tgtgctgatg
     6361 gaattggact ggggtgctgc ctgggcatca ggatatttta gctccccaag tgattctgat
     6421 acacagccaa agctgagaac caccaatgta gtctcccata gaatacagaa caaaagaacc
     6481 ttataccaga caggaacccc tgtactggcc ccatacagaa tcctcaggca tcaccttgta
     6541 cacaaagccc tgccttcaac ctgaccctca cttcttgggt cctcctgaca tcccctgtga
     6601 gcctcttacc cccacttcca catccccagg gcactgatct cacatcctgt tgtcccctag
     6661 attgtcagca aacgggcagg tactcagtgc accaactgcc agacgaccac cacgacactg
     6721 tggcggagaa atgccagcgg ggaccccgtg tgcaatgcct gcggcctcta ctacaagcta
     6781 caccaggtga caccctgccc cttggagcca cccctctgct ttccctgtct tcatgccaca
     6841 ctgccccgga ctctgttcct gttccacctt ctctctttcc ccacaaccct ctttcttctt
     6901 tccccttcct cctttccctc cttcctcccc attccctcat ctcttctact ttccccctgc
     6961 tctgttatta ccctccctcc ttccttctcc attccctcct cctccaccct cctccctcct
     7021 ctcctctccc ctacttccag gcatcagtta atgtccaccc ccctgtccta gaccttgggc
     7081 agctcctatc agccttggag gctttcccaa gctcagggtc tcacaacctc aggattcctt
     7141 aagacaatct ctgcacccca aaattatctt accctgaagg aagtggggta gagagggtgt
     7201 ccctggttga gacacagaga tgcaaaggtc tggagttggg gacacccgca gcctcccttt
     7261 tggcaggtga accggccact gaccatgcgg aaggatggta ttcagactcg aaaccgcaag
     7321 gcatctggaa aagggaaaaa gaaacggggc tctagtctgg gaggcacagg agcagccgaa
     7381 ggaccagctg gtggctttat ggtggtggct gggggcagtg gtagcgggaa ttgtggggag
     7441 gtgacttcag gcctgacact gggcccccca ggtactgccc atctctacca aggcctgggc
     7501 cctgtggtgc tgtcagggcc tgttagccac ctcatgcctt tccctggacc cctgctgggc
     7561 tcacccacag gctccttccc cacaggcccc atgcccccca ccaccagcgc tactgtggtg
     7621 gctccgctca gctcgtgagg gcacagagca cggcctccag aggaggggtg gtgtcctcct
     7681 cctcttgtag ccagctgtct ggacaaccca agtctctggg ccctaggcac cccatggcct
     7741 gaaccttcaa agcttttgta aaataaaacc atcaaagtcc tgaaa
//
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