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Macaca mulatta isolate AG07107 chromosome 9, Mmul_10, whole genome shotgun sequence

NCBI Reference Sequence: NC_041762.1

FASTA Graphics 

LOCUS       NC_041762               6765 bp    DNA     linear   CON 26-APR-2019
DEFINITION  Macaca mulatta isolate AG07107 chromosome 9, Mmul_10, whole genome
            shotgun sequence.
ACCESSION   NC_041762 REGION: 101606587..101613351
VERSION     NC_041762.1
DBLINK      BioProject: PRJNA528504
            BioSample: SAMN09435472
            Assembly: GCF_003339765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CM014344.1.
            Assembly name: Mmul_10
            The genomic sequence for this RefSeq record is from the
            whole-genome assembly released by The Genome Institute at
            Washington University School of Medicine on 2019/02/13. The
            original whole-genome shotgun project has the accession
            QNVO00000000.2.
            
            ##Genome-Assembly-Data-START##
            Assembly Provider     :: The Genome Institute at Washington
                                     University School of Medicine
            Assembly Method       :: HGAP4_SMRT_Link v. 5.0.1.9585
            Assembly Name         :: Macaca mulatta 2.0
            Genome Coverage       :: 66x
            Sequencing Technology :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Macaca mulatta Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6765
                     /organism="Macaca mulatta"
                     /mol_type="genomic DNA"
                     /isolate="AG07107"
                     /bio_material="Coriell:AG07107"
                     /db_xref="taxon:9544"
                     /chromosome="9"
                     /sex="female"
                     /tissue_type="fibroblast"
     gene            1..6765
                     /gene="TLX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /db_xref="GeneID:711584"
     mRNA            join(1..1138,3188..3389,5698..6765)
                     /gene="TLX1"
                     /product="T cell leukemia homeobox 1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 10 ESTs, 7 Proteins, and
                     91% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /transcript_id="XM_001109904.4"
                     /db_xref="GeneID:711584"
     CDS             join(553..1138,3188..3389,5698..5920)
                     /gene="TLX1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /codon_start=1
                     /product="T-cell leukemia homeobox protein 1"
                     /protein_id="XP_001109904.1"
                     /db_xref="GeneID:711584"
                     /translation="MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGE
                     YGLGCLVGGAYTYGGGGSAPGAGAGGAGAYGTGGPGGPGGPGGPGGPAGGGGACSMGP
                     LAGSYNVNMALAGGPGPGGGGSSSGGAGALSAAGVIRVPAHRPLTGAVAHPQPLATGL
                     PTVPSVPAMPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQ
                     ICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQ
                     ANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASA
                     CE"
ORIGIN      
        1 gggaagacag ttgacttcac cctccttgag tttgtctgtc tgtccgtctc tgggaatggt
       61 cgcttcttgt tttccctttt ccttttaagc ctctcctttt tcccctcttc tctctcctca
      121 tgaactactc cgagtcttgg tctccgtctc tctatctctg gctcctgcat ctgtctcggc
      181 ttctggcctt cctctccccc tcccctcccc tccctcgcgc tgtcattcac cccgctcctc
      241 tccgcgcaca gccaatggag agacccggcc gaaaccgcga agctctcttg caccgggctt
      301 tttcgcctgg tgattgatgt cccagagtca acagcgagcg gagccggagc cgggaagcag
      361 aagccagaga ggggaagaat acggcccccc tctccctccc ctcccccttc tactttagcc
      421 cttctgcgca cttcgcttcc aagtctccgc gcagccagga gccgctgttg cctcccagcc
      481 cctgctagct gcccccggag ccgagcgcag cgagcgccgc cgcccgggcc cccccgtggg
      541 gccggggcta gcatggagca cctgggaccg caccacctcc acccgggcca cgcagagccc
      601 atcagcttcg gcatcgacca gatcctcaac agcccagacc agggtggctg catggggccc
      661 gcctcgcgcc tccaggacgg agaatacggc cttggctgct tggttggagg cgcctacact
      721 tacggcggcg ggggctccgc gcccggggct ggggctggag gcgcgggggc ctatggcact
      781 ggaggtccgg gcggccccgg aggccccggc ggccccggag gcccggcagg cggcggcggc
      841 gcctgcagca tgggtccgct ggccggctcc tacaacgtga acatggcctt ggcgggcggc
      901 cccggtcctg gcggcggcgg tagcagcagc ggcggtgcgg gggcactcag cgctgcgggg
      961 gtgatccggg tgccggcaca caggccgctc accggagccg tggcccaccc ccagccgctg
     1021 gccaccggct tgcccaccgt gccctctgtg cctgccatgc caggcgtcaa caacctcact
     1081 ggcctcacct tcccctggat ggagagtaac cgcagataca caaaggacag gttcacaggt
     1141 gagtccggcc tgcgcgcgcg cctcgcctgg ccgcggcccg ggctctgtgt taccctttcc
     1201 ccgccggctg gctccccaaa gccggttctg tgcgccaggt cgcccacctc ttcttggtgc
     1261 ttcccccaag ttgagccgcc cgcccgattc tacatcgcag actcgccatg cttgaagaat
     1321 tctctcagcc tggacccctc tctgtctccc aaaggacccc tgctcagaga agctctccct
     1381 ggtctcctct cgggatccct gggcccggtc aggcagagaa gaaggccata gattgaggac
     1441 caccttctgc agctactccg ggtccgggaa tcttagagaa aggggtgcaa tgtgaacagt
     1501 ttcttccgtc ctggctgcag ttctaggacc gaagaagcca gccccaggat cagacgcaag
     1561 aaaagaacag gttcccccac cttcagtacc ctacacacat gcactccgcg ctcctagctc
     1621 cggtgcccgt ggtgctgcgg ggccagcggg agctctgagc tccagtaaat cagcagaacc
     1681 agtggccctt ttttttccca gagaggaggc ttcgtctggg aggatggcag cggggcatag
     1741 ccgcccagga cagctagctt ttcattttcg ttctgtccgg gctgcatgtc ctaccccggg
     1801 cccagccctg ttatcttggg catgaataat gcactgggca ggccagtgat cggtggcggg
     1861 aggactactc ccaggacatt aggtactagg tggtggccgc tgccgccgtc tctgctgccc
     1921 actcctgcct tcctctgctg gccctggctc cctctgctgc cgtttctgct ctggacactc
     1981 aactctccct ctggtgtggg tcccttcccc tgttctcact tcctgctccc cttaggactc
     2041 cctggatccc agaccatgat cctcccgtcc cgcctgggaa gcagccacaa attgagccca
     2101 ggttagccag ctggccttag agagaggagg caggagacac tggctgctgc tggcagagac
     2161 cgggactcct ggggatcccc tggctcaagg gaccaacagt ggaagggggt atacataact
     2221 acttgggaga agctgctgag agtcagacac tgggccagga gaccccgagg cacccctgac
     2281 tccctgcttc tgttccaggc aggagcacgg tcagggaaac tgctcctgca gcttcttacc
     2341 agactctggg gccacagcag aagtggtgtg ggggctggtg tccagacgaa gaacagttgc
     2401 ttgggtctag acctcaggaa gggccctcgc tgagaaaaac ccaagttttc tctggcctgg
     2461 ggcagcaggg cctggtgccc atcccattcc ccacccaggc caggccagtc ttgaagggcc
     2521 ctgctggaac cccagcccag agtctactaa tcctgggcct ctggtgaaag gtactcggtt
     2581 tagggcctac ctcggggccc taatactgtg tcaggcatga aggagttttg agcgagtgta
     2641 tggctgtggc cttgtgttgc tctgtgtcct gtgtttttgt cccgtgcctg tgcttgtctg
     2701 gtcctgtttg ggtgtataga tctatgagtt tgcccccgtt gtacgttgtg tcggtgtgtg
     2761 ctgctgtgga cagaggctca ggtcgggttc cagagtcagg ttcggtctcc tactctgagc
     2821 ctgaaggtct ggggctgact gaggggaggg gagcgtgacc attagctcgc cttagactgc
     2881 cccttggagg aggggcggca gggtggtggt tgggctcgcg ggagcccggg gctagggagg
     2941 cctctgtggt agctgcgaag gcggcgttcg actggcgggc aggagggggc cgtttcccgc
     3001 cgtgggcttg gtgctgaggg ctaacgggag gatctcggcc ctgctcgtgg gagttcagct
     3061 gctgcgctcg ctgattcgcg gggtgttggg cctgggacgc ttcctgacgc tctgctgctt
     3121 gcctctgccg tctgtctgtc tcccgctcca gtggccctct cacccttcac tgtaacacgc
     3181 cgtataggtc acccctatca gaaccggacg ccccccaaga agaagaagcc gcgtacgtcc
     3241 ttcacacgcc tgcagatctg cgagctggag aagcgcttcc accgccagaa gtacctggcc
     3301 tcggccgagc gcgccgccct ggccaaggcg ctcaaaatga ccgacgcgca ggtcaaaacc
     3361 tggttccaga accggcggac aaagtggagg tgagcaagct gggcgggccg gcagcccgcg
     3421 agcggcgcgg tctcaggcag ctgtcggttc gtggcctttt ctggtgcgca cacactttct
     3481 ccgctcgcgg tttctgatcc tttcggagga gcgagctccc gctaggtttg cggggagctg
     3541 gaagcaacgg aggcaggccg atagctggga tggggctgaa gggccctggc tctgttttac
     3601 cagaggcttc agggctttct ggctggcaca ctctctgccg gtgtagatgc ggcaggtttc
     3661 ttccgccgct ttggcaaaca ggcgggttcg tgcagtccac gcagtccagg ctccagggat
     3721 ctgtgtgtcc tggggagttt tttgtttgcg caaactcttg cttatggaat cctgctctgt
     3781 cccggagact gcatgcagat cggcccgcac cttgttgcag cgctccaacc gggctctccg
     3841 cagagggtct gggggcccca gaccgcggcc gtgttgacgg tctcctcccc agacgccagg
     3901 cttttgggca gccggtccct accctggaag gagaaaatca atccgcgccg gctgcggcgg
     3961 ggtttggcgg gtcccactga aaggggaatc aattaggagc agatgggtgt gtgtgagaaa
     4021 gagaattttc ccttctccca tagccgcaac tccagttact acgcactggg ttttttgttt
     4081 tgttttttca catttacgct caaggacatg aagcgtcccc aacactccca agcagcctcc
     4141 ctctccgcgc gcactgaagc tttctccggc tgctccctct ggcacgctgc accctcccgc
     4201 acatctggcc cttgcccgcc ggagtttctc ccctagctca ggcccagtgg ggcagcgcgg
     4261 gaaagtctgg gcgaagtcgg cggcgccgag acgggcgggc cttggggcag gaggaaggaa
     4321 ttggagtttc ctctttttct gaacgaaggc gaggaatctg cctgggattc cgcctacggg
     4381 gccacaaagg aagccatggt cccgcgattc taccgcaccc cacagcattc ctgccgctgg
     4441 ggaaggagtg ggggatgcgg cctcagacct tggaacgcta aagagggagc cagggctagc
     4501 tcaggagttg ggggggactc cagtttccaa ggcctactga gggctgcggg cctaggggag
     4561 gagaggcagc ctagcaggcc tcccagagag aggggcacag agaaagaaag aggcaggcaa
     4621 agagagaaac tgaaacacaa tcagtttcag gggtgggaag ggatagggag cccgctgaag
     4681 gaaaaaaagg aggaaaacag gcagcctaca gaagtcttat ttatgtataa taaagaaaag
     4741 caatggatga ctgaaatcaa cattttcttt tcaaacaaat tcctttaatt cagagagaac
     4801 caagtgggtg gggaggagag aaaatgagag agaagacaca aagcataaaa gagaaatatt
     4861 caggccgttt gaaatgcagg ggaaagggga aagacgaaag acagaaagat acacagtcaa
     4921 gaaaaggcgg cccagagcag gtcagcagcc gctgctgaca gaggcccttg caggcttcgc
     4981 atggcttcat cgatcgccta caaattgctt ctgaaggccc cggggactcc cattaggtct
     5041 gtccacctta gagacagacg tttgatctca gttgacaggg tggaggggag gcattaaatg
     5101 gaataagtga gtcattgcct ccctgaactg cctcagagga agccagtggg tccagcagga
     5161 gcccctgcag ggcacagggc tccacacaga aggcccaagg cctagaagac attcgcagag
     5221 agagggaggc aagagacgtc ctgcagagca gatcatagcc gctggtcctt gcctctctac
     5281 cctggacttg tgggtagggt gagggccctc cggcttggaa tggcacctgg tctccctcag
     5341 ggcggggggg gggggcgggg aagcgagatg ccatcctacc cctggctgcc ccttgtgagg
     5401 cctgcggggt gtgggcgctg ctcgtggatg cggaatccca gctgtttggg cctggcagac
     5461 tttcccaccc ctccttctct gggatacctt ggctccatct gctttggggt ttctagtctt
     5521 tgttggagtc aggactctca aaagaaggga acgcattata ggggcccaaa ctggatttgg
     5581 ggactgcaaa agcgagcagc gctcgttcag tttatctcct gggaactcac ccggagctgg
     5641 gcgcacgcgg gagccgggtc ggtgctcctg gcaggtaacg gcttgttccc ggtgcagacg
     5701 gcagactgcg gaggaacggg aggccgagag gcagcaagcg aaccgcatcc tcctgcagtt
     5761 gcagcaggag gccttccaga agagcctggc acagccgctg cccgccgacc ctctgtgcgt
     5821 gcacaactca tcgctcttcg ccctgcagaa tctgcagccg tggtctgacg actcgaccaa
     5881 aatcactagc gtcacgtcgg tggcgtcggc ctgcgagtga gcctgcccat tctgccctgt
     5941 gggaccccag gcccactcag gggtcactga ggcctgagac ccaggactcc tccccacctt
     6001 tcctggcctc agactgcacc caggagggga acactgccct cccacggcac cgaagggccc
     6061 ccacatttgt gccgacactg ttctctcttc ggtggaagaa gagctcaagg gataaggaca
     6121 cgcgccccct cccagacgcg tcccgcaccc atctgaactg ttaagaaatc tctgtttttg
     6181 tttatttcat tttattttaa tttttaacgt gggattcaga gagaggcaag ggaggtaggg
     6241 gaggaggagc ttcttaggtc cccagggcta tcatctgaat ttgccctggg aaaccccttc
     6301 tctgtgaccc acttctcatc acacacatgg aaacccatag gcccacacag aggtggtgtc
     6361 actgtccctc ctggtgtcac cccagagcca cccatgggca tctatggcag agtgtcatcc
     6421 agacacaggg tcacagacac aggtcacggg tgacacacac tcatcctgaa cggcatggca
     6481 ctccctccag cacaaacaca aggtcaaggc cacactgtgg cacactacac catacacaac
     6541 agccacaaca gcctcatttg gtctgccagg cccctaccac acatcccagc ccaacccagg
     6601 tatgcacaga cagattttca cataaatgca gcccatttct ccagaaccca ttttgggggg
     6661 gggggtgtta agttatgcac ttataaggtg ttttctgtgt aaccatttta taaagtgctt
     6721 gtgtaattta tgtggaaaaa ataaataaaa gcctccggat ccgga
//
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