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Danio rerio strain Tuebingen chromosome 6, GRCz11 Primary Assembly

NCBI Reference Sequence: NC_007117.7

FASTA Graphics 

LOCUS       NC_007117               7217 bp    DNA     linear   CON 08-SEP-2024
DEFINITION  Danio rerio strain Tuebingen chromosome 6, GRCz11 Primary Assembly.
ACCESSION   NC_007117 REGION: 29707123..29714339
VERSION     NC_007117.7
DBLINK      BioProject: PRJNA13922
            BioSample: SAMN06930106
            Assembly: GCF_000002035.6
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 7217)
  AUTHORS   Howe,K., Clark,M.D., Torroja,C.F., Torrance,J., Berthelot,C.,
            Muffato,M., Collins,J.E., Humphray,S., McLaren,K., Matthews,L.,
            McLaren,S., Sealy,I., Caccamo,M., Churcher,C., Scott,C.,
            Barrett,J.C., Koch,R., Rauch,G.J., White,S., Chow,W., Kilian,B.,
            Quintais,L.T., Guerra-Assuncao,J.A., Zhou,Y., Gu,Y., Yen,J.,
            Vogel,J.H., Eyre,T., Redmond,S., Banerjee,R., Chi,J., Fu,B.,
            Langley,E., Maguire,S.F., Laird,G.K., Lloyd,D., Kenyon,E.,
            Donaldson,S., Sehra,H., Almeida-King,J., Loveland,J., Trevanion,S.,
            Jones,M., Quail,M., Willey,D., Hunt,A., Burton,J., Sims,S.,
            McLay,K., Plumb,B., Davis,J., Clee,C., Oliver,K., Clark,R.,
            Riddle,C., Elliot,D., Threadgold,G., Harden,G., Ware,D., Begum,S.,
            Mortimore,B., Kerry,G., Heath,P., Phillimore,B., Tracey,A.,
            Corby,N., Dunn,M., Johnson,C., Wood,J., Clark,S., Pelan,S.,
            Griffiths,G., Smith,M., Glithero,R., Howden,P., Barker,N.,
            Lloyd,C., Stevens,C., Harley,J., Holt,K., Panagiotidis,G.,
            Lovell,J., Beasley,H., Henderson,C., Gordon,D., Auger,K.,
            Wright,D., Collins,J., Raisen,C., Dyer,L., Leung,K., Robertson,L.,
            Ambridge,K., Leongamornlert,D., McGuire,S., Gilderthorp,R.,
            Griffiths,C., Manthravadi,D., Nichol,S., Barker,G., Whitehead,S.,
            Kay,M., Brown,J., Murnane,C., Gray,E., Humphries,M., Sycamore,N.,
            Barker,D., Saunders,D., Wallis,J., Babbage,A., Hammond,S.,
            Mashreghi-Mohammadi,M., Barr,L., Martin,S., Wray,P., Ellington,A.,
            Matthews,N., Ellwood,M., Woodmansey,R., Clark,G., Cooper,J.,
            Tromans,A., Grafham,D., Skuce,C., Pandian,R., Andrews,R.,
            Harrison,E., Kimberley,A., Garnett,J., Fosker,N., Hall,R.,
            Garner,P., Kelly,D., Bird,C., Palmer,S., Gehring,I., Berger,A.,
            Dooley,C.M., Ersan-Urun,Z., Eser,C., Geiger,H., Geisler,M.,
            Karotki,L., Kirn,A., Konantz,J., Konantz,M., Oberlander,M.,
            Rudolph-Geiger,S., Teucke,M., Lanz,C., Raddatz,G., Osoegawa,K.,
            Zhu,B., Rapp,A., Widaa,S., Langford,C., Yang,F., Schuster,S.C.,
            Carter,N.P., Harrow,J., Ning,Z., Herrero,J., Searle,S.M.,
            Enright,A., Geisler,R., Plasterk,R.H., Lee,C., Westerfield,M., de
            Jong,P.J., Zon,L.I., Postlethwait,J.H., Nusslein-Volhard,C.,
            Hubbard,T.J., Roest Crollius,H., Rogers,J. and Stemple,D.L.
  TITLE     The zebrafish reference genome sequence and its relationship to the
            human genome
  JOURNAL   Nature 496 (7446), 498-503 (2013)
   PUBMED   23594743
  REMARK    Erratum:[Nature. 2014 Jan 9;505(7482):248. Cooper, James [corrected
            to Cooper, James D]; Eliott, David [corrected to Elliot, David];
            Mortimer, Beverly [corrected to Mortimore, Beverley]; Begum,
            Sharmin [added]; Lloyd, Christine [added]; Lanz, Christa [added];
            Raddatz, Gunter [added]; Schuster, Stephan C [added]]
REFERENCE   2  (bases 1 to 7217)
  CONSRTM   Genome Reference Consortium
  TITLE     Genome Reference Consortium reference assembly of the zebrafish
            genome
  JOURNAL   Unpublished
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CM002890.2.
            
            On Jun 26, 2017 this sequence version replaced NC_007117.6.
            Assembly Name: GRCz11 Primary Assembly
            The GRCz11 sequence is composed of genomic sequence, primarily
            finished clones that were sequenced as part of Zebrafish Genome
            Project at the Wellcome Trust Sanger Institute. PCR products and
            WGS shotgun sequence from mainly the WGS31 assembly
            (CABZ00000000.1) but also WGS29 (CAAK00000000.1) and WGS32
            (CZQB00000000.1) have been added where necessary to fill gaps. In
            addition, unplaced sequences from WGS31 were added if they featured
            at least 5 kb of non-repetitive sequence, or if alignments with a
            cDNA could be detected that were not already covered by the placed
            sequences. For more information see: https://genomereference.org.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7217
                     /organism="Danio rerio"
                     /mol_type="genomic DNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="6"
     gene            1..7217
                     /gene="phb2b"
                     /gene_synonym="zgc:86841"
                     /note="prohibitin 2b; Derived by automated computational
                     analysis using gene prediction method: BestRefSeq."
                     /db_xref="GeneID:436954"
                     /db_xref="ZFIN:ZDB-GENE-040718-430"
     mRNA            join(1..65,880..1009,1898..1982,2089..2168,2973..3157,
                     5283..5412,5495..5598,6141..6218,6487..6563,6721..7217)
                     /gene="phb2b"
                     /gene_synonym="zgc:86841"
                     /product="prohibitin 2b"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefSeq."
                     /transcript_id="NM_001002681.2"
                     /db_xref="GeneID:436954"
                     /db_xref="ZFIN:ZDB-GENE-040718-430"
     CDS             join(45..65,880..1009,1898..1982,2089..2168,2973..3157,
                     5283..5412,5495..5598,6141..6218,6487..6563,6721..6742)
                     /gene="phb2b"
                     /gene_synonym="zgc:86841"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefSeq."
                     /codon_start=1
                     /product="prohibitin-2b"
                     /protein_id="NP_001002681.2"
                     /db_xref="GeneID:436954"
                     /db_xref="ZFIN:ZDB-GENE-040718-430"
                     /translation="MANKEPSRFLQNLRDLMGRISSGSRGAGIGLKLLIGAGALAYGV
                     REATYTVEGGQRAIIFNRIGGVQLDTVLTEGLHFRIPWFQYPIIYDIRARPRKISSLT
                     GSKDLQMVNIALRVLSRPLASNLPIMYQQLGQDYDERVLPSIVNEVLKSVVAKFNASQ
                     LITQRAQVSLLIRRELFERAKDFNIILDDVAITELSFSREYTAAVEAKQVAQQEAQRA
                     QFFVEKAKQEQKQKIIQAEGEAQAAKMLGEAVTKNPGYLKLRRIRAAQNIAKTVAASQ
                     NKVYLSADSLVMNLQDDSFNKLSLGKK"
ORIGIN      
        1 aaagcggaag ttgttcatga cgaccttgag tggcgcttgc aagcatggcg aataaagagc
       61 ctagcgtaag taccggtgta taatttttaa cacatttact taagaattat aaaatcatat
      121 tggtggtcgt tgatgcaaat aactttttta caatatgcca tattctgttt acagaagtct
      181 aaacagcaag agttacacat gtacagtaca tgaccagtag tcttgtcctg ctgtcataca
      241 ttaagcacat ttataacgtt cacgttacat gctatgtgcc ttactcttaa attagataac
      301 tacagttaaa ctacatggtc ttaaatgaag gtgtagagtt acgatcgatt ttaattcatg
      361 caggtttgta tgaagaattg gtcacggcac attatgcgct tttgttgtct gtgtcagaca
      421 gaatgtcagc tcataaagta atttctcaga cattgcttat tattaaattt taatacatcc
      481 aacttgaaga ttaaactaaa acatataagc tagacatgaa gaagtataca cattaagcat
      541 cagtggatgg cgccatcgtc tcatttaaca ctttgacaac gttattctgt gaagatgatg
      601 tggtatgtaa cgttaatatg acaaaatagt agtaatttat agtaaatgct gtgtgtcttt
      661 gtatagctat ataaataaat tactcaatgt tttagttttt ttccaactac aggctaggtt
      721 atactacaaa accccatagt ttacgatagt aaaaaataag tataccacag tatttgttac
      781 agtttattag ttgactactt aatagtatat ttcaaaaaca tactcattgt tatatgacct
      841 ttccacggga ataaatgtgt gtattttgtt gtcttgcaga ggttccttca gaacctgaga
      901 gatttgatgg gacgcatatc ctcaggttcg aggggcgctg gaatcggact aaagttatta
      961 attggagcag gtgcactcgc ttatggagtt agagaagcca cttatacagg tacattacta
     1021 tggtataaag tagtacatta gttagaactg gagctcagtg actaggtgta cactaccact
     1081 cagcagtctg ggatcagtaa caaggcttga cattaagctg tatgcttgtg tgcatgtcct
     1141 tcagaaaaat aaatcacttc acttgtctaa gttaaaaaaa aaaagtgaat tattatcact
     1201 ttgttataga atcattattt tcattagtgt tctgaatcgt ttcttaaata gccctgtaaa
     1261 attgatttct gaagtatttt tgtctattta aaaaaatcat taaataacaa ccttagtata
     1321 tgtatggaaa aattagtatg cactaatagt aaattcacaa accttgagtc atgaattcaa
     1381 ttaatgcaat taaatgaatc tttttcactg cagtaaaatt agggtaaaac ggctgtttag
     1441 atgtattgac tgtttaatga agctgcaatg gagtctattt acattgtcaa attacacagg
     1501 cttaaataac ttcatgagct taaataaatg acctaaattg acagtaaatc catgtaaggt
     1561 gttacaaaag atttgcttta aataaatgct gttctttaaa acatttgagg aatttaacag
     1621 tttcctagaa atagagtgat ttctgataaa tcatgtgtca gaaaagtagt atttgcagta
     1681 aaaaataaat aaatttttaa atatagaaaa aagtaaaaca tttactttaa gtggtaatct
     1741 cacagtatca ctgttttact gatttttgat cataaatcta aaaattattt tgaaaatatt
     1801 acacatctta gaacccccaa acttttgaac tagtgtaaaa tttttgaaat aagagtttta
     1861 cttgtgtaat cattgacaaa cctgttctta tgtgtagtgg agggtggcca acgagcaatt
     1921 atctttaaca gaattggagg ggtccagtta gataccgtcc tcactgaggg tctccacttc
     1981 aggtaaccct ttcaactgat agccttctgt acaaaatccc atgtttagtt tcaccataaa
     2041 atagtaaagt tgtaactaaa ttgtttctga tttgcattct tctaatagga taccatggtt
     2101 tcagtatcca atcatatatg atatccgagc cagaccaaga aaaatatcat ctctaacagg
     2161 aagcaaaggt aacattttgt ctgtgttttg ctgtcttttg aacactgtat ttttattatt
     2221 gcagcagctt gtattgtgct tttttgttta aggcatggaa catcaagtat ttctatagtt
     2281 agtcatttta cttcccattt atcataatgt aacttttcta tactctgttt tagcacattg
     2341 tttcatgccc attgttatgg ttaggctatt tttcactgcc ttttctctcc ctgcttgtca
     2401 aacagcaata agtcaaatgc agttaacagc tcaaagtctt aactttttaa agtcccattg
     2461 gtaatacagg tcaaaaggtg ttagcttgtg taatgtagct agaatgttag ctagctagtt
     2521 attacaaaat atgttgtttt tgtagcataa ctggtcactg acataactga aaaacgccaa
     2581 ccattcaggg gttaagatta atcatagtat tttaaatcaa tgttatagtc taattaaaag
     2641 cattgaacac tcccttaaat taaaatcaat ctaaccttca gtcctgcttt gtttggggct
     2701 ttagtactgt atcataaaca gatgtgatgt gacaacacga cattatttcc atttgaagca
     2761 ttatttgtcc taattaacca actgttaaac ttaattttgt attaaaactt agctttgagt
     2821 caatagattc aaaatactat cttttcgttt attataggtc atggaaattc agggaatttg
     2881 acattgggct tagtgtacga accctgtgta gtttttgtgt atgtagttca aggtcttgag
     2941 ttgtaagttt catgtatatg taatgttttc agacctgcag atggtgaaca ttgcgttgcg
     3001 cgtgttgtca cgacctttgg cttccaacct gcccatcatg taccagcagc tggggcagga
     3061 ctatgatgag cgcgtgctgc cgtccattgt aaacgaagtt ctgaagagcg tggttgccaa
     3121 attcaacgct tcccaactaa ttacgcaaag agcccaagtt agtattctct cacagtctgt
     3181 ttcttatttt tcaaaggctt ctacaaatta atgttgttgt tttttctaga aaattgtgtg
     3241 cagctgattg tgatccagtt atatgtgtaa agtgtagtgt ggatttagtt atttgggggg
     3301 ccctaagcaa ttctagccat tggggcccat aagtcctaat atgcactctt tttatttttt
     3361 attttgctgt ctttttttta tatcactcaa tcttctttcc tacatttgtg catagtcatc
     3421 cattggagtt aagcagcgct gtgtctggtc agtacctgaa tggaagacca aatggcaaag
     3481 ctaggttgct gctataaggt gttagtgttg tcaccagggg ctatccaacc tgcgatctgt
     3541 gtgggtccta atgccgcaat atagtgaagg agaaacttta ctgtcagtta gcaccgtctt
     3601 tcagatgagg cgttaaacca agtgcctgac tctctatggt cattgaaaat cccaggatat
     3661 ccttcgaaaa gagtagtggt gtcaccccga tatcctggcc aaatttgtag actggcttct
     3721 gtcaataatg gcctcttagc catccttata tcgtaattgg cttcatcact ctttctcctc
     3781 cgccaataag ctggtgtgtg gtctggcgca aaaatggctg ccgtcgcgtc atccaggtgg
     3841 atgctgcaga ctggtggtgg atgagaagat cccccacaac atctgtaaaa cgctttgagt
     3901 acccagaaaa gcgtcatgta aatgtaagga attattattt gtaccttaat gcagtttcta
     3961 cattttaaat gatttgtttc ctaaaactgc tgaactgttt taaaaacaaa atcttcatct
     4021 ggttttagtc ttcaggatgt cattttcaac gctaaaccgt ttcacagttg aaaaattaat
     4081 tttaaaaagg gaactagaat tacaaactga cactggcaat tgtaatagat gcccgattgg
     4141 atgagttttt gagaaagggg attactgcaa ctttaattaa ttttgggggg aaaaaaagat
     4201 aattctagtg tgtgattaca ctatcaaaat gctgcatatt gtgaaagact atacattcaa
     4261 cggtctgtgt aaaaaaataa atataatttg caattaattc acaatgtcaa ttgcattgtt
     4321 gaaaaaagca tatatttgca gtcacattga tgctgaagtc acatttaaaa ataatatgaa
     4381 ttatgtaagt gtttttaagt gctactaaaa aaagttattg tgatatttta tgtcagattt
     4441 gctttataca aacttactat tctgaaagag atctagaaat aagtcagaat tctgtggaaa
     4501 aaaaaaagtt gcaattgcaa gatataaagt aagcattgtg gcattttgtg ttattatccc
     4561 attcgagaaa aatattccaa attttgagat taaaaattta tatttttcag aaataaagtc
     4621 agaattgtga gagataaagt atagattcat gttactgaga tttaccttaa cttgagtgtt
     4681 aatgacatgt cagtggatgg attgcattaa ctcacaatta tagaaaagat tgtactattt
     4741 ttgggaggat tttagtaaac aagaaatctc cattttatta gagacagaca acgcaagcat
     4801 agtttctgag tcactttatt tttagtatta tgtacaaaga catacaaaat gacaattagg
     4861 actttataac acgcaattgt gactttttat cgcagaattc agactttttc tttcaattga
     4921 tagattattt catgctgttc tgactttatt tctcagattt gttagatttc agttctgcaa
     4981 tttcaagttt acatctcaca attctgagaa acatttttta tttcttattc aattacagaa
     5041 accaacttcc ataaaaaaga aaaccagtca aaagtcttga aaataaaagc aaaacattta
     5101 taaacaatat aaaactgtat cttagttcac caagtttccc tctctccaaa acaaatgcat
     5161 tgaattgagt agtattttgg agaaaaatct aaaacactaa agtgttagat tctgaaaaca
     5221 gcctaattta tttatccagc ctaaaattga taatattctt aatcctgatt gtttttttgc
     5281 aggtctccct gctcatccga cgggagctct ttgaacgtgc taaagacttc aacattattc
     5341 tggatgatgt ggccatcaca gagctgagct tcagcaggga gtacacagca gctgtggagg
     5401 ctaaacaagt tggttagtaa gatttggttc ttctgtgctg ctgcacaaat tatgtttaaa
     5461 taattagtta ttaaaagtgt gcatggtctt ccagcccagc aggaggcaca aagagctcag
     5521 ttctttgtgg agaaagctaa acaagaacag aagcagaaga ttatccaagc tgaaggagaa
     5581 gctcaggcag ccaaaatggt atgacctttc tatttagaat tatttatcgt ttgtcaagaa
     5641 ctcacaggtc caaatgccta ttttatttta tcttatctta ttttacataa gtattaaaat
     5701 atataaatat aaaaatataa aagccatcca ttatttatta ttattatttc atattttctt
     5761 aataatatac aaaaattata ttagcaatac aatgtttata tcacattatg actattttta
     5821 gataatattt tatattgttg tatttaaata atatgcaata atattatata atgtataaaa
     5881 cacagatcta aacattatga agcattattt taacaaaatt aaaaactaaa cattttttta
     5941 ttaaaatgtt atattgttag agattgcttt attattatta ttattatttt attagtattt
     6001 ttctataaaa ttaataatat tataatataa tataatattt attataatat aatataataa
     6061 tatataataa tatttatttt tcaaaaatgt tgtataagaa attgtttatg tatttgttta
     6121 tgatctgatc cacttcacag ttaggggagg ctgtcacaaa gaaccctgga tacctgaaac
     6181 taagaagaat cagagcagca cagaacatcg ccaaaacggt acagtgttat tattcacttt
     6241 ttttcacaat gtggcttttt gtttactcat catttttaat gagctttcct gatgtaaacg
     6301 gtacgctttg gaaaaaggtg tgtttttcac ccatgtaaat atttgatgtt cactagtggt
     6361 tctgccaagg ttcagctggt cttggatggc ttttttggca taacattatt tgttttattc
     6421 ttggaataag atgaatgtta cgttgttctt tctgaaaggc ctgaccagat gaaggttgtt
     6481 ttacaggtgg ccgcttcaca gaacaaggtg tacctgagtg ctgatagttt ggttatgaat
     6541 ctacaggatg actcttttaa caagtaagaa ctgtaaagtc cttacacaac ttcctatatg
     6601 acaggcagtt aagattttac cagtagtaaa ataatacatg cctaatcaaa aaatatacgt
     6661 gtgattaatg gcattgtgta aaaatatagt tgatgttgac tatcattttt tggattgcag
     6721 attgtcgctc ggaaagaagt aactcattct taaggctcac tcaaatcatc caaggttcta
     6781 atacaagtaa gctttgaggt gtcttttgag gtggcattct ctgattggat cacaaatgga
     6841 gatgtcagtc tgagaagact cgttaattat ctaatggtgt cgttctggct tattagttaa
     6901 ttttgacacc aaagtttgct gattacagag aaactgaaga tctgtgttat tcggcacaat
     6961 gaatgaagac tctaatgtaa aagatacttc ttcttttttt cttttctttt tttcaacgtt
     7021 gattgttgta acaaaacaaa tgtttaaaaa attcagtaga ccaacttatg gcttacttga
     7081 aagaatcata cataatataa tacatactgt tgtttatgca agacaaagac ataagaataa
     7141 aaacatattt tatattcatg tttgataagt gacttggtgt tcaaattaaa ctagaatata
     7201 tggatgctat gaaacac
//
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