LOCUS NC_007117 7217 bp DNA linear CON 08-SEP-2024
DEFINITION Danio rerio strain Tuebingen chromosome 6, GRCz11 Primary Assembly.
ACCESSION NC_007117 REGION: 29707123..29714339
VERSION NC_007117.7
DBLINK BioProject: PRJNA13922
BioSample: SAMN06930106
Assembly: GCF_000002035.6
KEYWORDS RefSeq.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 7217)
AUTHORS Howe,K., Clark,M.D., Torroja,C.F., Torrance,J., Berthelot,C.,
Muffato,M., Collins,J.E., Humphray,S., McLaren,K., Matthews,L.,
McLaren,S., Sealy,I., Caccamo,M., Churcher,C., Scott,C.,
Barrett,J.C., Koch,R., Rauch,G.J., White,S., Chow,W., Kilian,B.,
Quintais,L.T., Guerra-Assuncao,J.A., Zhou,Y., Gu,Y., Yen,J.,
Vogel,J.H., Eyre,T., Redmond,S., Banerjee,R., Chi,J., Fu,B.,
Langley,E., Maguire,S.F., Laird,G.K., Lloyd,D., Kenyon,E.,
Donaldson,S., Sehra,H., Almeida-King,J., Loveland,J., Trevanion,S.,
Jones,M., Quail,M., Willey,D., Hunt,A., Burton,J., Sims,S.,
McLay,K., Plumb,B., Davis,J., Clee,C., Oliver,K., Clark,R.,
Riddle,C., Elliot,D., Threadgold,G., Harden,G., Ware,D., Begum,S.,
Mortimore,B., Kerry,G., Heath,P., Phillimore,B., Tracey,A.,
Corby,N., Dunn,M., Johnson,C., Wood,J., Clark,S., Pelan,S.,
Griffiths,G., Smith,M., Glithero,R., Howden,P., Barker,N.,
Lloyd,C., Stevens,C., Harley,J., Holt,K., Panagiotidis,G.,
Lovell,J., Beasley,H., Henderson,C., Gordon,D., Auger,K.,
Wright,D., Collins,J., Raisen,C., Dyer,L., Leung,K., Robertson,L.,
Ambridge,K., Leongamornlert,D., McGuire,S., Gilderthorp,R.,
Griffiths,C., Manthravadi,D., Nichol,S., Barker,G., Whitehead,S.,
Kay,M., Brown,J., Murnane,C., Gray,E., Humphries,M., Sycamore,N.,
Barker,D., Saunders,D., Wallis,J., Babbage,A., Hammond,S.,
Mashreghi-Mohammadi,M., Barr,L., Martin,S., Wray,P., Ellington,A.,
Matthews,N., Ellwood,M., Woodmansey,R., Clark,G., Cooper,J.,
Tromans,A., Grafham,D., Skuce,C., Pandian,R., Andrews,R.,
Harrison,E., Kimberley,A., Garnett,J., Fosker,N., Hall,R.,
Garner,P., Kelly,D., Bird,C., Palmer,S., Gehring,I., Berger,A.,
Dooley,C.M., Ersan-Urun,Z., Eser,C., Geiger,H., Geisler,M.,
Karotki,L., Kirn,A., Konantz,J., Konantz,M., Oberlander,M.,
Rudolph-Geiger,S., Teucke,M., Lanz,C., Raddatz,G., Osoegawa,K.,
Zhu,B., Rapp,A., Widaa,S., Langford,C., Yang,F., Schuster,S.C.,
Carter,N.P., Harrow,J., Ning,Z., Herrero,J., Searle,S.M.,
Enright,A., Geisler,R., Plasterk,R.H., Lee,C., Westerfield,M., de
Jong,P.J., Zon,L.I., Postlethwait,J.H., Nusslein-Volhard,C.,
Hubbard,T.J., Roest Crollius,H., Rogers,J. and Stemple,D.L.
TITLE The zebrafish reference genome sequence and its relationship to the
human genome
JOURNAL Nature 496 (7446), 498-503 (2013)
PUBMED 23594743
REMARK Erratum:[Nature. 2014 Jan 9;505(7482):248. Cooper, James [corrected
to Cooper, James D]; Eliott, David [corrected to Elliot, David];
Mortimer, Beverly [corrected to Mortimore, Beverley]; Begum,
Sharmin [added]; Lloyd, Christine [added]; Lanz, Christa [added];
Raddatz, Gunter [added]; Schuster, Stephan C [added]]
REFERENCE 2 (bases 1 to 7217)
CONSRTM Genome Reference Consortium
TITLE Genome Reference Consortium reference assembly of the zebrafish
genome
JOURNAL Unpublished
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CM002890.2.
On Jun 26, 2017 this sequence version replaced NC_007117.6.
Assembly Name: GRCz11 Primary Assembly
The GRCz11 sequence is composed of genomic sequence, primarily
finished clones that were sequenced as part of Zebrafish Genome
Project at the Wellcome Trust Sanger Institute. PCR products and
WGS shotgun sequence from mainly the WGS31 assembly
(CABZ00000000.1) but also WGS29 (CAAK00000000.1) and WGS32
(CZQB00000000.1) have been added where necessary to fill gaps. In
addition, unplaced sequences from WGS31 were added if they featured
at least 5 kb of non-repetitive sequence, or if alignments with a
cDNA could be detected that were not already covered by the placed
sequences. For more information see: https://genomereference.org.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_000002035.6-RS_2024_08
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.3
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 08/15/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..7217
/organism="Danio rerio"
/mol_type="genomic DNA"
/strain="Tuebingen"
/db_xref="taxon:7955"
/chromosome="6"
gene 1..7217
/gene="phb2b"
/gene_synonym="zgc:86841"
/note="prohibitin 2b; Derived by automated computational
analysis using gene prediction method: BestRefSeq."
/db_xref="GeneID:436954"
/db_xref="ZFIN:ZDB-GENE-040718-430"
mRNA join(1..65,880..1009,1898..1982,2089..2168,2973..3157,
5283..5412,5495..5598,6141..6218,6487..6563,6721..7217)
/gene="phb2b"
/gene_synonym="zgc:86841"
/product="prohibitin 2b"
/note="Derived by automated computational analysis using
gene prediction method: BestRefSeq."
/transcript_id="NM_001002681.2"
/db_xref="GeneID:436954"
/db_xref="ZFIN:ZDB-GENE-040718-430"
CDS join(45..65,880..1009,1898..1982,2089..2168,2973..3157,
5283..5412,5495..5598,6141..6218,6487..6563,6721..6742)
/gene="phb2b"
/gene_synonym="zgc:86841"
/note="Derived by automated computational analysis using
gene prediction method: BestRefSeq."
/codon_start=1
/product="prohibitin-2b"
/protein_id="NP_001002681.2"
/db_xref="GeneID:436954"
/db_xref="ZFIN:ZDB-GENE-040718-430"
/translation="MANKEPSRFLQNLRDLMGRISSGSRGAGIGLKLLIGAGALAYGV
REATYTVEGGQRAIIFNRIGGVQLDTVLTEGLHFRIPWFQYPIIYDIRARPRKISSLT
GSKDLQMVNIALRVLSRPLASNLPIMYQQLGQDYDERVLPSIVNEVLKSVVAKFNASQ
LITQRAQVSLLIRRELFERAKDFNIILDDVAITELSFSREYTAAVEAKQVAQQEAQRA
QFFVEKAKQEQKQKIIQAEGEAQAAKMLGEAVTKNPGYLKLRRIRAAQNIAKTVAASQ
NKVYLSADSLVMNLQDDSFNKLSLGKK"
ORIGIN
1 aaagcggaag ttgttcatga cgaccttgag tggcgcttgc aagcatggcg aataaagagc
61 ctagcgtaag taccggtgta taatttttaa cacatttact taagaattat aaaatcatat
121 tggtggtcgt tgatgcaaat aactttttta caatatgcca tattctgttt acagaagtct
181 aaacagcaag agttacacat gtacagtaca tgaccagtag tcttgtcctg ctgtcataca
241 ttaagcacat ttataacgtt cacgttacat gctatgtgcc ttactcttaa attagataac
301 tacagttaaa ctacatggtc ttaaatgaag gtgtagagtt acgatcgatt ttaattcatg
361 caggtttgta tgaagaattg gtcacggcac attatgcgct tttgttgtct gtgtcagaca
421 gaatgtcagc tcataaagta atttctcaga cattgcttat tattaaattt taatacatcc
481 aacttgaaga ttaaactaaa acatataagc tagacatgaa gaagtataca cattaagcat
541 cagtggatgg cgccatcgtc tcatttaaca ctttgacaac gttattctgt gaagatgatg
601 tggtatgtaa cgttaatatg acaaaatagt agtaatttat agtaaatgct gtgtgtcttt
661 gtatagctat ataaataaat tactcaatgt tttagttttt ttccaactac aggctaggtt
721 atactacaaa accccatagt ttacgatagt aaaaaataag tataccacag tatttgttac
781 agtttattag ttgactactt aatagtatat ttcaaaaaca tactcattgt tatatgacct
841 ttccacggga ataaatgtgt gtattttgtt gtcttgcaga ggttccttca gaacctgaga
901 gatttgatgg gacgcatatc ctcaggttcg aggggcgctg gaatcggact aaagttatta
961 attggagcag gtgcactcgc ttatggagtt agagaagcca cttatacagg tacattacta
1021 tggtataaag tagtacatta gttagaactg gagctcagtg actaggtgta cactaccact
1081 cagcagtctg ggatcagtaa caaggcttga cattaagctg tatgcttgtg tgcatgtcct
1141 tcagaaaaat aaatcacttc acttgtctaa gttaaaaaaa aaaagtgaat tattatcact
1201 ttgttataga atcattattt tcattagtgt tctgaatcgt ttcttaaata gccctgtaaa
1261 attgatttct gaagtatttt tgtctattta aaaaaatcat taaataacaa ccttagtata
1321 tgtatggaaa aattagtatg cactaatagt aaattcacaa accttgagtc atgaattcaa
1381 ttaatgcaat taaatgaatc tttttcactg cagtaaaatt agggtaaaac ggctgtttag
1441 atgtattgac tgtttaatga agctgcaatg gagtctattt acattgtcaa attacacagg
1501 cttaaataac ttcatgagct taaataaatg acctaaattg acagtaaatc catgtaaggt
1561 gttacaaaag atttgcttta aataaatgct gttctttaaa acatttgagg aatttaacag
1621 tttcctagaa atagagtgat ttctgataaa tcatgtgtca gaaaagtagt atttgcagta
1681 aaaaataaat aaatttttaa atatagaaaa aagtaaaaca tttactttaa gtggtaatct
1741 cacagtatca ctgttttact gatttttgat cataaatcta aaaattattt tgaaaatatt
1801 acacatctta gaacccccaa acttttgaac tagtgtaaaa tttttgaaat aagagtttta
1861 cttgtgtaat cattgacaaa cctgttctta tgtgtagtgg agggtggcca acgagcaatt
1921 atctttaaca gaattggagg ggtccagtta gataccgtcc tcactgaggg tctccacttc
1981 aggtaaccct ttcaactgat agccttctgt acaaaatccc atgtttagtt tcaccataaa
2041 atagtaaagt tgtaactaaa ttgtttctga tttgcattct tctaatagga taccatggtt
2101 tcagtatcca atcatatatg atatccgagc cagaccaaga aaaatatcat ctctaacagg
2161 aagcaaaggt aacattttgt ctgtgttttg ctgtcttttg aacactgtat ttttattatt
2221 gcagcagctt gtattgtgct tttttgttta aggcatggaa catcaagtat ttctatagtt
2281 agtcatttta cttcccattt atcataatgt aacttttcta tactctgttt tagcacattg
2341 tttcatgccc attgttatgg ttaggctatt tttcactgcc ttttctctcc ctgcttgtca
2401 aacagcaata agtcaaatgc agttaacagc tcaaagtctt aactttttaa agtcccattg
2461 gtaatacagg tcaaaaggtg ttagcttgtg taatgtagct agaatgttag ctagctagtt
2521 attacaaaat atgttgtttt tgtagcataa ctggtcactg acataactga aaaacgccaa
2581 ccattcaggg gttaagatta atcatagtat tttaaatcaa tgttatagtc taattaaaag
2641 cattgaacac tcccttaaat taaaatcaat ctaaccttca gtcctgcttt gtttggggct
2701 ttagtactgt atcataaaca gatgtgatgt gacaacacga cattatttcc atttgaagca
2761 ttatttgtcc taattaacca actgttaaac ttaattttgt attaaaactt agctttgagt
2821 caatagattc aaaatactat cttttcgttt attataggtc atggaaattc agggaatttg
2881 acattgggct tagtgtacga accctgtgta gtttttgtgt atgtagttca aggtcttgag
2941 ttgtaagttt catgtatatg taatgttttc agacctgcag atggtgaaca ttgcgttgcg
3001 cgtgttgtca cgacctttgg cttccaacct gcccatcatg taccagcagc tggggcagga
3061 ctatgatgag cgcgtgctgc cgtccattgt aaacgaagtt ctgaagagcg tggttgccaa
3121 attcaacgct tcccaactaa ttacgcaaag agcccaagtt agtattctct cacagtctgt
3181 ttcttatttt tcaaaggctt ctacaaatta atgttgttgt tttttctaga aaattgtgtg
3241 cagctgattg tgatccagtt atatgtgtaa agtgtagtgt ggatttagtt atttgggggg
3301 ccctaagcaa ttctagccat tggggcccat aagtcctaat atgcactctt tttatttttt
3361 attttgctgt ctttttttta tatcactcaa tcttctttcc tacatttgtg catagtcatc
3421 cattggagtt aagcagcgct gtgtctggtc agtacctgaa tggaagacca aatggcaaag
3481 ctaggttgct gctataaggt gttagtgttg tcaccagggg ctatccaacc tgcgatctgt
3541 gtgggtccta atgccgcaat atagtgaagg agaaacttta ctgtcagtta gcaccgtctt
3601 tcagatgagg cgttaaacca agtgcctgac tctctatggt cattgaaaat cccaggatat
3661 ccttcgaaaa gagtagtggt gtcaccccga tatcctggcc aaatttgtag actggcttct
3721 gtcaataatg gcctcttagc catccttata tcgtaattgg cttcatcact ctttctcctc
3781 cgccaataag ctggtgtgtg gtctggcgca aaaatggctg ccgtcgcgtc atccaggtgg
3841 atgctgcaga ctggtggtgg atgagaagat cccccacaac atctgtaaaa cgctttgagt
3901 acccagaaaa gcgtcatgta aatgtaagga attattattt gtaccttaat gcagtttcta
3961 cattttaaat gatttgtttc ctaaaactgc tgaactgttt taaaaacaaa atcttcatct
4021 ggttttagtc ttcaggatgt cattttcaac gctaaaccgt ttcacagttg aaaaattaat
4081 tttaaaaagg gaactagaat tacaaactga cactggcaat tgtaatagat gcccgattgg
4141 atgagttttt gagaaagggg attactgcaa ctttaattaa ttttgggggg aaaaaaagat
4201 aattctagtg tgtgattaca ctatcaaaat gctgcatatt gtgaaagact atacattcaa
4261 cggtctgtgt aaaaaaataa atataatttg caattaattc acaatgtcaa ttgcattgtt
4321 gaaaaaagca tatatttgca gtcacattga tgctgaagtc acatttaaaa ataatatgaa
4381 ttatgtaagt gtttttaagt gctactaaaa aaagttattg tgatatttta tgtcagattt
4441 gctttataca aacttactat tctgaaagag atctagaaat aagtcagaat tctgtggaaa
4501 aaaaaaagtt gcaattgcaa gatataaagt aagcattgtg gcattttgtg ttattatccc
4561 attcgagaaa aatattccaa attttgagat taaaaattta tatttttcag aaataaagtc
4621 agaattgtga gagataaagt atagattcat gttactgaga tttaccttaa cttgagtgtt
4681 aatgacatgt cagtggatgg attgcattaa ctcacaatta tagaaaagat tgtactattt
4741 ttgggaggat tttagtaaac aagaaatctc cattttatta gagacagaca acgcaagcat
4801 agtttctgag tcactttatt tttagtatta tgtacaaaga catacaaaat gacaattagg
4861 actttataac acgcaattgt gactttttat cgcagaattc agactttttc tttcaattga
4921 tagattattt catgctgttc tgactttatt tctcagattt gttagatttc agttctgcaa
4981 tttcaagttt acatctcaca attctgagaa acatttttta tttcttattc aattacagaa
5041 accaacttcc ataaaaaaga aaaccagtca aaagtcttga aaataaaagc aaaacattta
5101 taaacaatat aaaactgtat cttagttcac caagtttccc tctctccaaa acaaatgcat
5161 tgaattgagt agtattttgg agaaaaatct aaaacactaa agtgttagat tctgaaaaca
5221 gcctaattta tttatccagc ctaaaattga taatattctt aatcctgatt gtttttttgc
5281 aggtctccct gctcatccga cgggagctct ttgaacgtgc taaagacttc aacattattc
5341 tggatgatgt ggccatcaca gagctgagct tcagcaggga gtacacagca gctgtggagg
5401 ctaaacaagt tggttagtaa gatttggttc ttctgtgctg ctgcacaaat tatgtttaaa
5461 taattagtta ttaaaagtgt gcatggtctt ccagcccagc aggaggcaca aagagctcag
5521 ttctttgtgg agaaagctaa acaagaacag aagcagaaga ttatccaagc tgaaggagaa
5581 gctcaggcag ccaaaatggt atgacctttc tatttagaat tatttatcgt ttgtcaagaa
5641 ctcacaggtc caaatgccta ttttatttta tcttatctta ttttacataa gtattaaaat
5701 atataaatat aaaaatataa aagccatcca ttatttatta ttattatttc atattttctt
5761 aataatatac aaaaattata ttagcaatac aatgtttata tcacattatg actattttta
5821 gataatattt tatattgttg tatttaaata atatgcaata atattatata atgtataaaa
5881 cacagatcta aacattatga agcattattt taacaaaatt aaaaactaaa cattttttta
5941 ttaaaatgtt atattgttag agattgcttt attattatta ttattatttt attagtattt
6001 ttctataaaa ttaataatat tataatataa tataatattt attataatat aatataataa
6061 tatataataa tatttatttt tcaaaaatgt tgtataagaa attgtttatg tatttgttta
6121 tgatctgatc cacttcacag ttaggggagg ctgtcacaaa gaaccctgga tacctgaaac
6181 taagaagaat cagagcagca cagaacatcg ccaaaacggt acagtgttat tattcacttt
6241 ttttcacaat gtggcttttt gtttactcat catttttaat gagctttcct gatgtaaacg
6301 gtacgctttg gaaaaaggtg tgtttttcac ccatgtaaat atttgatgtt cactagtggt
6361 tctgccaagg ttcagctggt cttggatggc ttttttggca taacattatt tgttttattc
6421 ttggaataag atgaatgtta cgttgttctt tctgaaaggc ctgaccagat gaaggttgtt
6481 ttacaggtgg ccgcttcaca gaacaaggtg tacctgagtg ctgatagttt ggttatgaat
6541 ctacaggatg actcttttaa caagtaagaa ctgtaaagtc cttacacaac ttcctatatg
6601 acaggcagtt aagattttac cagtagtaaa ataatacatg cctaatcaaa aaatatacgt
6661 gtgattaatg gcattgtgta aaaatatagt tgatgttgac tatcattttt tggattgcag
6721 attgtcgctc ggaaagaagt aactcattct taaggctcac tcaaatcatc caaggttcta
6781 atacaagtaa gctttgaggt gtcttttgag gtggcattct ctgattggat cacaaatgga
6841 gatgtcagtc tgagaagact cgttaattat ctaatggtgt cgttctggct tattagttaa
6901 ttttgacacc aaagtttgct gattacagag aaactgaaga tctgtgttat tcggcacaat
6961 gaatgaagac tctaatgtaa aagatacttc ttcttttttt cttttctttt tttcaacgtt
7021 gattgttgta acaaaacaaa tgtttaaaaa attcagtaga ccaacttatg gcttacttga
7081 aagaatcata cataatataa tacatactgt tgtttatgca agacaaagac ataagaataa
7141 aaacatattt tatattcatg tttgataagt gacttggtgt tcaaattaaa ctagaatata
7201 tggatgctat gaaacac
//