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Arabidopsis thaliana chromosome 5, partial sequence

NCBI Reference Sequence: NC_003076.8

FASTA Graphics 

LOCUS       NC_003076               1868 bp    DNA     linear   CON 10-APR-2023
DEFINITION  Arabidopsis thaliana chromosome 5, partial sequence.
ACCESSION   NC_003076 REGION: 3408209..3410076
VERSION     NC_003076.8
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
            Assembly: GCF_000001735.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1868)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1868)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1868)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1868)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to CP002688.
            
            On Jun 19, 2009 this sequence version replaced NC_003076.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: TAIR and Araport
            Annotation Status   :: Full annotation
            Annotation Pipeline :: Eukaryotic Annotation Propagation Pipeline
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1868
                     /locus_tag="AT5G10780"
                     /gene_synonym="T30N20.50; T30N20_50"
                     /db_xref="Araport:AT5G10780"
                     /db_xref="GeneID:830945"
                     /db_xref="TAIR:AT5G10780"
     mRNA            join(1..342,494..550,736..889,1098..1195,1317..1382,
                     1513..1868)
                     /locus_tag="AT5G10780"
                     /gene_synonym="T30N20.50; T30N20_50"
                     /product="ER membrane protein complex subunit-like
                     protein"
                     /inference="Similar to RNA sequence,
                     EST:INSD:T45118.1,INSD:T45405.1,INSD:AV552454.1,
                     INSD:ES121951.1,INSD:BP843422.1,INSD:ES200899.1,
                     INSD:EL210235.1,INSD:BP842446.1,INSD:EL233626.1,
                     INSD:EH982652.1,INSD:Z30871.1,INSD:ES085838.1,
                     INSD:BP868189.1,INSD:BP851701.1,INSD:ES150126.1,
                     INSD:T42966.1,INSD:EL221652.1,INSD:BP823974.1,
                     INSD:BP826005.1,INSD:EH836709.1,INSD:ES053447.1,
                     INSD:ES030790.1,INSD:ES182070.1,INSD:ES188439.1,
                     INSD:ES109321.1,INSD:BP849415.1,INSD:CB260729.1,
                     INSD:EL226361.1,INSD:T22513.1,INSD:ES156902.1,
                     INSD:EL328535.1,INSD:ES038457.1,INSD:EL007492.1,
                     INSD:BP828794.1,INSD:DR365181.1,INSD:EL010384.1,
                     INSD:BP844667.1,INSD:EL217674.1,INSD:EH946328.1,
                     INSD:ES025535.1,INSD:EL206474.1,INSD:ES020616.1,
                     INSD:EL095562.1,INSD:BP860549.1,INSD:AI999139.1,
                     INSD:EG517284.1"
                     /transcript_id="NM_121116.4"
                     /db_xref="GeneID:830945"
                     /db_xref="TAIR:AT5G10780"
                     /db_xref="Araport:AT5G10780"
     mRNA            join(71..342,494..550,736..889,1098..1195,1317..1382,
                     1517..1862)
                     /locus_tag="AT5G10780"
                     /gene_synonym="T30N20.50; T30N20_50"
                     /product="ER membrane protein complex subunit-like
                     protein"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES121951.1,INSD:CB257049.1,INSD:BP631138.1,
                     INSD:ES200899.1,INSD:BP625880.1,INSD:EL210235.1,
                     INSD:EL233626.1,INSD:EH982652.1,INSD:AV821180.1,
                     INSD:Z30871.1,INSD:ES150126.1,INSD:AV830540.1,
                     INSD:ES210739.1,INSD:BP826005.1,INSD:ES053447.1,
                     INSD:ES109321.1,INSD:EL236982.1,INSD:T22513.1,
                     INSD:BP587525.1,INSD:BP664793.1,INSD:BP828794.1,
                     INSD:BP844667.1,INSD:EL217674.1,INSD:EH946328.1,
                     INSD:ES020616.1,INSD:BP589888.1,INSD:EL095562.1,
                     INSD:BP860549.1,INSD:AI999139.1,INSD:T45118.1,
                     INSD:AV527185.1,INSD:T45405.1,INSD:AV552454.1,
                     INSD:BP843422.1,INSD:BP842446.1,INSD:ES085838.1,
                     INSD:AV520741.1,INSD:BP868189.1,INSD:BP851701.1,
                     INSD:AV543988.1,INSD:T42966.1,INSD:EL221652.1,
                     INSD:BP823974.1,INSD:EH836709.1,INSD:ES030790.1,
                     INSD:ES182070.1,INSD:ES188439.1,INSD:DR384030.1,
                     INSD:BP849415.1,INSD:EL226361.1,INSD:AV812055.1,
                     INSD:ES156902.1,INSD:EL106299.1,INSD:AV820987.1,
                     INSD:EL328535.1,INSD:ES038457.1,INSD:EL007492.1,
                     INSD:BP631684.1,INSD:DR365181.1,INSD:EL010384.1,
                     INSD:EL206474.1,INSD:ES025535.1,INSD:BP670053.1,
                     INSD:AV788919.1,INSD:EG517284.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AF428403.1,INSD:AY057731.1,INSD:AY037209.1"
                     /transcript_id="NM_001085099.1"
                     /db_xref="GeneID:830945"
                     /db_xref="TAIR:AT5G10780"
                     /db_xref="Araport:AT5G10780"
     CDS             join(214..342,494..550,736..889,1098..1195,1317..1382,
                     1517..1576)
                     /locus_tag="AT5G10780"
                     /gene_synonym="T30N20.50; T30N20_50"
                     /inference="Similar to RNA sequence,
                     EST:INSD:T45118.1,INSD:T45405.1,INSD:AV552454.1,
                     INSD:ES121951.1,INSD:BP843422.1,INSD:ES200899.1,
                     INSD:EL210235.1,INSD:BP842446.1,INSD:EL233626.1,
                     INSD:EH982652.1,INSD:Z30871.1,INSD:ES085838.1,
                     INSD:BP868189.1,INSD:BP851701.1,INSD:ES150126.1,
                     INSD:T42966.1,INSD:EL221652.1,INSD:BP823974.1,
                     INSD:BP826005.1,INSD:EH836709.1,INSD:ES053447.1,
                     INSD:ES030790.1,INSD:ES182070.1,INSD:ES188439.1,
                     INSD:ES109321.1,INSD:BP849415.1,INSD:CB260729.1,
                     INSD:EL226361.1,INSD:T22513.1,INSD:ES156902.1,
                     INSD:EL328535.1,INSD:ES038457.1,INSD:EL007492.1,
                     INSD:BP828794.1,INSD:DR365181.1,INSD:EL010384.1,
                     INSD:BP844667.1,INSD:EL217674.1,INSD:EH946328.1,
                     INSD:ES025535.1,INSD:EL206474.1,INSD:ES020616.1,
                     INSD:EL095562.1,INSD:BP860549.1,INSD:AI999139.1,
                     INSD:EG517284.1"
                     /note="FUNCTIONS IN: molecular_function unknown; INVOLVED
                     IN: biological_process unknown; LOCATED IN:
                     cellular_component unknown; EXPRESSED IN: 22 plant
                     structures; EXPRESSED DURING: 14 growth stages; CONTAINS
                     InterPro DOMAIN/s: Uncharacterised conserved protein
                     UCP017207, transmembrane protein 85 (InterPro:IPR016687),
                     Protein of unknown function DUF1077 (InterPro:IPR009445);
                     Has 395 Blast hits to 395 proteins in 185 species: Archae
                     - 0; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants -
                     51; Viruses - 0; Other Eukaryotes - 83 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="ER membrane protein complex subunit-like
                     protein"
                     /protein_id="NP_001078568.1"
                     /db_xref="GeneID:830945"
                     /db_xref="TAIR:AT5G10780"
                     /db_xref="Araport:AT5G10780"
                     /translation="MDKGKAVMGTGRRWAVEFSDQSTVPSSRDILDPPGFSRASQEQD
                     DSANSRQKKDAEATWKLQKAWEVAQSPFKNLMMMGFMMWMAGNTVHLFSIGITFSALW
                     QPISALQSVGKIFEPFKDNKVELLMPKLVFLALNLGGLALGVWKLNTLGLLPTHASDW
                     VSSLPPPQLNTRAEDLFSTDESASLVF"
     CDS             join(214..342,494..550,736..889,1098..1195,1317..1382,
                     1513..1551)
                     /locus_tag="AT5G10780"
                     /gene_synonym="T30N20.50; T30N20_50"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES121951.1,INSD:CB257049.1,INSD:BP631138.1,
                     INSD:ES200899.1,INSD:BP625880.1,INSD:EL210235.1,
                     INSD:EL233626.1,INSD:EH982652.1,INSD:AV821180.1,
                     INSD:Z30871.1,INSD:ES150126.1,INSD:AV830540.1,
                     INSD:ES210739.1,INSD:BP826005.1,INSD:ES053447.1,
                     INSD:ES109321.1,INSD:EL236982.1,INSD:T22513.1,
                     INSD:BP587525.1,INSD:BP664793.1,INSD:BP828794.1,
                     INSD:BP844667.1,INSD:EL217674.1,INSD:EH946328.1,
                     INSD:ES020616.1,INSD:BP589888.1,INSD:EL095562.1,
                     INSD:BP860549.1,INSD:AI999139.1,INSD:T45118.1,
                     INSD:AV527185.1,INSD:T45405.1,INSD:AV552454.1,
                     INSD:BP843422.1,INSD:BP842446.1,INSD:ES085838.1,
                     INSD:AV520741.1,INSD:BP868189.1,INSD:BP851701.1,
                     INSD:AV543988.1,INSD:T42966.1,INSD:EL221652.1,
                     INSD:BP823974.1,INSD:EH836709.1,INSD:ES030790.1,
                     INSD:ES182070.1,INSD:ES188439.1,INSD:DR384030.1,
                     INSD:BP849415.1,INSD:EL226361.1,INSD:AV812055.1,
                     INSD:ES156902.1,INSD:EL106299.1,INSD:AV820987.1,
                     INSD:EL328535.1,INSD:ES038457.1,INSD:EL007492.1,
                     INSD:BP631684.1,INSD:DR365181.1,INSD:EL010384.1,
                     INSD:EL206474.1,INSD:ES025535.1,INSD:BP670053.1,
                     INSD:AV788919.1,INSD:EG517284.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AF428403.1,INSD:AY057731.1,INSD:AY037209.1"
                     /note="CONTAINS InterPro DOMAIN/s: Uncharacterised
                     conserved protein UCP017207, transmembrane protein 85
                     (InterPro:IPR016687), Protein of unknown function DUF1077
                     (InterPro:IPR009445); Has 30201 Blast hits to 17322
                     proteins in 780 species: Archae - 12; Bacteria - 1396;
                     Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
                     Other Eukaryotes - 2996 (source: NCBI BLink)."
                     /codon_start=1
                     /product="ER membrane protein complex subunit-like
                     protein"
                     /protein_id="NP_568238.1"
                     /db_xref="GeneID:830945"
                     /db_xref="TAIR:AT5G10780"
                     /db_xref="Araport:AT5G10780"
                     /translation="MDKGKAVMGTGRRWAVEFSDQSTVPSSRDILDPPGFSRASQEQD
                     DSANSRQKKDAEATWKLQKAWEVAQSPFKNLMMMGFMMWMAGNTVHLFSIGITFSALW
                     QPISALQSVGKIFEPFKDNKVELLMPKLVFLALNLGGLALGVWKLNTLGLLPTHASDW
                     VSSLPPPQEVEHSGGGFVFH"
ORIGIN      
        1 aagcctaata gaataaagga aactgagatc cagttaaaat atctggattt ggacccgacc
       61 tgaagaaacg ggtttggagt gaagattttt tttagctttc cttgtcaatt attcgaattg
      121 ggaaaacatc taaagctgag gagaagataa atccgatcta ggtctcttct tccccaatct
      181 ctctgtgtct ctctcgatcg aagaaagaag acaatggaca aaggcaaagc agtgatgggt
      241 actggtcgga gatgggccgt cgaattctcc gatcaatcta ctgttccatc ttcccgtgac
      301 atcctcgatc cacctggctt ctctcgtgcc tctcaggaac aggttaattt ctttcttttt
      361 aggccgttcc ggtattggat tcttatattt cctgttgttc tcgattggat tcgaggtttc
      421 aatttggaat tttgactgag aattgagttg ttttgctact gggatttgat gtgttatcgt
      481 ttgatgagtt caggatgatt cagcaaacag ccgccaaaag aaagacgctg aagctacttg
      541 gaaacttcag gtatacactt atgtcaaatc tgaaagtcgt atcttactct atgtagatct
      601 taaaagccat tgacttccat gtattggatt gtcacagagc ttacgttaga ctgtatttcg
      661 ctgtccaaat ctgattgggt ttgaagtgag gatgaagttt ataaaactga tatgtttttt
      721 ttggggaatg agcagaaagc gtgggaagta gcgcaatctc catttaagaa tttgatgatg
      781 atgggtttca tgatgtggat ggctggaaac acagttcatc tttttagtat tggtattact
      841 ttctctgctc tttggcagcc tatcagtgct cttcagagtg ttggaaagag taagtttcct
      901 tcactacatc ttattcgtct ttgcctaaca tgcaatttgg tatcctatta attagcttgt
      961 cagcccacaa ttatatgtag tttatcgaac tgtgatgact tcttgattgg aaaatataaa
     1021 agttaaatga aatggtgttt gaacttgcaa gtagtatcca tcattcctta tattttacct
     1081 ttacaccttg tctgcagttt ttgagccatt caaggataac aaagtggaac tacttatgcc
     1141 gaaattagtg ttccttgccc taaaccttgg agggctagct ttgggtgtct ggaaggtaag
     1201 aaactttttt ttcgtttcct cattgtatcc tctttccttt ttccgtatgg caacactggc
     1261 ttagattaca agtgtaaaga actgtttcct tatacaaacg attttcactt tctcagctta
     1321 acactttggg gcttcttcca acacatgcat cagattgggt ttcatctcta ccccctcctc
     1381 aggttggtaa tttctgtctg aagctaaatc ttaggcctat gtgttttaaa tacatccgtg
     1441 aaagcaagaa tctggcattt tgacgaatca tctctaagct gcacatcttg tttcctcctc
     1501 ttactttttc aggaagttga acactcgggc ggaggatttg ttttccactg atgaatcagc
     1561 gtctcttgta ttttaaaata atccgctaaa accgcgcgac aacgacaaca cttttgtgag
     1621 ataactgcaa cagttactta agtgatatga acctccctca tcttatgata ttcttgtagc
     1681 attttcaaaa ctcagaaacc atagttttta cactttttag tatgatgctc attgttcatc
     1741 ataactatga atgtattatt ggcactgaag ggaccttatc tcccagcttt ttgtttctca
     1801 tctttttaga caggaatgga taaaatattt cagataaaag ctttactctc tttattgctt
     1861 ccactcaa
//
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