LOCUS NC_003076 1868 bp DNA linear CON 10-APR-2023
DEFINITION Arabidopsis thaliana chromosome 5, partial sequence.
ACCESSION NC_003076 REGION: 3408209..3410076
VERSION NC_003076.8
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
Assembly: GCF_000001735.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1868)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1868)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1868)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1868)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to CP002688.
On Jun 19, 2009 this sequence version replaced NC_003076.7.
##Genome-Annotation-Data-START##
Annotation Provider :: TAIR and Araport
Annotation Status :: Full annotation
Annotation Pipeline :: Eukaryotic Annotation Propagation Pipeline
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1868
/organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1868
/locus_tag="AT5G10780"
/gene_synonym="T30N20.50; T30N20_50"
/db_xref="Araport:AT5G10780"
/db_xref="GeneID:830945"
/db_xref="TAIR:AT5G10780"
mRNA join(1..342,494..550,736..889,1098..1195,1317..1382,
1513..1868)
/locus_tag="AT5G10780"
/gene_synonym="T30N20.50; T30N20_50"
/product="ER membrane protein complex subunit-like
protein"
/inference="Similar to RNA sequence,
EST:INSD:T45118.1,INSD:T45405.1,INSD:AV552454.1,
INSD:ES121951.1,INSD:BP843422.1,INSD:ES200899.1,
INSD:EL210235.1,INSD:BP842446.1,INSD:EL233626.1,
INSD:EH982652.1,INSD:Z30871.1,INSD:ES085838.1,
INSD:BP868189.1,INSD:BP851701.1,INSD:ES150126.1,
INSD:T42966.1,INSD:EL221652.1,INSD:BP823974.1,
INSD:BP826005.1,INSD:EH836709.1,INSD:ES053447.1,
INSD:ES030790.1,INSD:ES182070.1,INSD:ES188439.1,
INSD:ES109321.1,INSD:BP849415.1,INSD:CB260729.1,
INSD:EL226361.1,INSD:T22513.1,INSD:ES156902.1,
INSD:EL328535.1,INSD:ES038457.1,INSD:EL007492.1,
INSD:BP828794.1,INSD:DR365181.1,INSD:EL010384.1,
INSD:BP844667.1,INSD:EL217674.1,INSD:EH946328.1,
INSD:ES025535.1,INSD:EL206474.1,INSD:ES020616.1,
INSD:EL095562.1,INSD:BP860549.1,INSD:AI999139.1,
INSD:EG517284.1"
/transcript_id="NM_121116.4"
/db_xref="GeneID:830945"
/db_xref="TAIR:AT5G10780"
/db_xref="Araport:AT5G10780"
mRNA join(71..342,494..550,736..889,1098..1195,1317..1382,
1517..1862)
/locus_tag="AT5G10780"
/gene_synonym="T30N20.50; T30N20_50"
/product="ER membrane protein complex subunit-like
protein"
/inference="Similar to RNA sequence,
EST:INSD:ES121951.1,INSD:CB257049.1,INSD:BP631138.1,
INSD:ES200899.1,INSD:BP625880.1,INSD:EL210235.1,
INSD:EL233626.1,INSD:EH982652.1,INSD:AV821180.1,
INSD:Z30871.1,INSD:ES150126.1,INSD:AV830540.1,
INSD:ES210739.1,INSD:BP826005.1,INSD:ES053447.1,
INSD:ES109321.1,INSD:EL236982.1,INSD:T22513.1,
INSD:BP587525.1,INSD:BP664793.1,INSD:BP828794.1,
INSD:BP844667.1,INSD:EL217674.1,INSD:EH946328.1,
INSD:ES020616.1,INSD:BP589888.1,INSD:EL095562.1,
INSD:BP860549.1,INSD:AI999139.1,INSD:T45118.1,
INSD:AV527185.1,INSD:T45405.1,INSD:AV552454.1,
INSD:BP843422.1,INSD:BP842446.1,INSD:ES085838.1,
INSD:AV520741.1,INSD:BP868189.1,INSD:BP851701.1,
INSD:AV543988.1,INSD:T42966.1,INSD:EL221652.1,
INSD:BP823974.1,INSD:EH836709.1,INSD:ES030790.1,
INSD:ES182070.1,INSD:ES188439.1,INSD:DR384030.1,
INSD:BP849415.1,INSD:EL226361.1,INSD:AV812055.1,
INSD:ES156902.1,INSD:EL106299.1,INSD:AV820987.1,
INSD:EL328535.1,INSD:ES038457.1,INSD:EL007492.1,
INSD:BP631684.1,INSD:DR365181.1,INSD:EL010384.1,
INSD:EL206474.1,INSD:ES025535.1,INSD:BP670053.1,
INSD:AV788919.1,INSD:EG517284.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF428403.1,INSD:AY057731.1,INSD:AY037209.1"
/transcript_id="NM_001085099.1"
/db_xref="GeneID:830945"
/db_xref="TAIR:AT5G10780"
/db_xref="Araport:AT5G10780"
CDS join(214..342,494..550,736..889,1098..1195,1317..1382,
1517..1576)
/locus_tag="AT5G10780"
/gene_synonym="T30N20.50; T30N20_50"
/inference="Similar to RNA sequence,
EST:INSD:T45118.1,INSD:T45405.1,INSD:AV552454.1,
INSD:ES121951.1,INSD:BP843422.1,INSD:ES200899.1,
INSD:EL210235.1,INSD:BP842446.1,INSD:EL233626.1,
INSD:EH982652.1,INSD:Z30871.1,INSD:ES085838.1,
INSD:BP868189.1,INSD:BP851701.1,INSD:ES150126.1,
INSD:T42966.1,INSD:EL221652.1,INSD:BP823974.1,
INSD:BP826005.1,INSD:EH836709.1,INSD:ES053447.1,
INSD:ES030790.1,INSD:ES182070.1,INSD:ES188439.1,
INSD:ES109321.1,INSD:BP849415.1,INSD:CB260729.1,
INSD:EL226361.1,INSD:T22513.1,INSD:ES156902.1,
INSD:EL328535.1,INSD:ES038457.1,INSD:EL007492.1,
INSD:BP828794.1,INSD:DR365181.1,INSD:EL010384.1,
INSD:BP844667.1,INSD:EL217674.1,INSD:EH946328.1,
INSD:ES025535.1,INSD:EL206474.1,INSD:ES020616.1,
INSD:EL095562.1,INSD:BP860549.1,INSD:AI999139.1,
INSD:EG517284.1"
/note="FUNCTIONS IN: molecular_function unknown; INVOLVED
IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Uncharacterised conserved protein
UCP017207, transmembrane protein 85 (InterPro:IPR016687),
Protein of unknown function DUF1077 (InterPro:IPR009445);
Has 395 Blast hits to 395 proteins in 185 species: Archae
- 0; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants -
51; Viruses - 0; Other Eukaryotes - 83 (source: NCBI
BLink)."
/codon_start=1
/product="ER membrane protein complex subunit-like
protein"
/protein_id="NP_001078568.1"
/db_xref="GeneID:830945"
/db_xref="TAIR:AT5G10780"
/db_xref="Araport:AT5G10780"
/translation="MDKGKAVMGTGRRWAVEFSDQSTVPSSRDILDPPGFSRASQEQD
DSANSRQKKDAEATWKLQKAWEVAQSPFKNLMMMGFMMWMAGNTVHLFSIGITFSALW
QPISALQSVGKIFEPFKDNKVELLMPKLVFLALNLGGLALGVWKLNTLGLLPTHASDW
VSSLPPPQLNTRAEDLFSTDESASLVF"
CDS join(214..342,494..550,736..889,1098..1195,1317..1382,
1513..1551)
/locus_tag="AT5G10780"
/gene_synonym="T30N20.50; T30N20_50"
/inference="Similar to RNA sequence,
EST:INSD:ES121951.1,INSD:CB257049.1,INSD:BP631138.1,
INSD:ES200899.1,INSD:BP625880.1,INSD:EL210235.1,
INSD:EL233626.1,INSD:EH982652.1,INSD:AV821180.1,
INSD:Z30871.1,INSD:ES150126.1,INSD:AV830540.1,
INSD:ES210739.1,INSD:BP826005.1,INSD:ES053447.1,
INSD:ES109321.1,INSD:EL236982.1,INSD:T22513.1,
INSD:BP587525.1,INSD:BP664793.1,INSD:BP828794.1,
INSD:BP844667.1,INSD:EL217674.1,INSD:EH946328.1,
INSD:ES020616.1,INSD:BP589888.1,INSD:EL095562.1,
INSD:BP860549.1,INSD:AI999139.1,INSD:T45118.1,
INSD:AV527185.1,INSD:T45405.1,INSD:AV552454.1,
INSD:BP843422.1,INSD:BP842446.1,INSD:ES085838.1,
INSD:AV520741.1,INSD:BP868189.1,INSD:BP851701.1,
INSD:AV543988.1,INSD:T42966.1,INSD:EL221652.1,
INSD:BP823974.1,INSD:EH836709.1,INSD:ES030790.1,
INSD:ES182070.1,INSD:ES188439.1,INSD:DR384030.1,
INSD:BP849415.1,INSD:EL226361.1,INSD:AV812055.1,
INSD:ES156902.1,INSD:EL106299.1,INSD:AV820987.1,
INSD:EL328535.1,INSD:ES038457.1,INSD:EL007492.1,
INSD:BP631684.1,INSD:DR365181.1,INSD:EL010384.1,
INSD:EL206474.1,INSD:ES025535.1,INSD:BP670053.1,
INSD:AV788919.1,INSD:EG517284.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF428403.1,INSD:AY057731.1,INSD:AY037209.1"
/note="CONTAINS InterPro DOMAIN/s: Uncharacterised
conserved protein UCP017207, transmembrane protein 85
(InterPro:IPR016687), Protein of unknown function DUF1077
(InterPro:IPR009445); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/codon_start=1
/product="ER membrane protein complex subunit-like
protein"
/protein_id="NP_568238.1"
/db_xref="GeneID:830945"
/db_xref="TAIR:AT5G10780"
/db_xref="Araport:AT5G10780"
/translation="MDKGKAVMGTGRRWAVEFSDQSTVPSSRDILDPPGFSRASQEQD
DSANSRQKKDAEATWKLQKAWEVAQSPFKNLMMMGFMMWMAGNTVHLFSIGITFSALW
QPISALQSVGKIFEPFKDNKVELLMPKLVFLALNLGGLALGVWKLNTLGLLPTHASDW
VSSLPPPQEVEHSGGGFVFH"
ORIGIN
1 aagcctaata gaataaagga aactgagatc cagttaaaat atctggattt ggacccgacc
61 tgaagaaacg ggtttggagt gaagattttt tttagctttc cttgtcaatt attcgaattg
121 ggaaaacatc taaagctgag gagaagataa atccgatcta ggtctcttct tccccaatct
181 ctctgtgtct ctctcgatcg aagaaagaag acaatggaca aaggcaaagc agtgatgggt
241 actggtcgga gatgggccgt cgaattctcc gatcaatcta ctgttccatc ttcccgtgac
301 atcctcgatc cacctggctt ctctcgtgcc tctcaggaac aggttaattt ctttcttttt
361 aggccgttcc ggtattggat tcttatattt cctgttgttc tcgattggat tcgaggtttc
421 aatttggaat tttgactgag aattgagttg ttttgctact gggatttgat gtgttatcgt
481 ttgatgagtt caggatgatt cagcaaacag ccgccaaaag aaagacgctg aagctacttg
541 gaaacttcag gtatacactt atgtcaaatc tgaaagtcgt atcttactct atgtagatct
601 taaaagccat tgacttccat gtattggatt gtcacagagc ttacgttaga ctgtatttcg
661 ctgtccaaat ctgattgggt ttgaagtgag gatgaagttt ataaaactga tatgtttttt
721 ttggggaatg agcagaaagc gtgggaagta gcgcaatctc catttaagaa tttgatgatg
781 atgggtttca tgatgtggat ggctggaaac acagttcatc tttttagtat tggtattact
841 ttctctgctc tttggcagcc tatcagtgct cttcagagtg ttggaaagag taagtttcct
901 tcactacatc ttattcgtct ttgcctaaca tgcaatttgg tatcctatta attagcttgt
961 cagcccacaa ttatatgtag tttatcgaac tgtgatgact tcttgattgg aaaatataaa
1021 agttaaatga aatggtgttt gaacttgcaa gtagtatcca tcattcctta tattttacct
1081 ttacaccttg tctgcagttt ttgagccatt caaggataac aaagtggaac tacttatgcc
1141 gaaattagtg ttccttgccc taaaccttgg agggctagct ttgggtgtct ggaaggtaag
1201 aaactttttt ttcgtttcct cattgtatcc tctttccttt ttccgtatgg caacactggc
1261 ttagattaca agtgtaaaga actgtttcct tatacaaacg attttcactt tctcagctta
1321 acactttggg gcttcttcca acacatgcat cagattgggt ttcatctcta ccccctcctc
1381 aggttggtaa tttctgtctg aagctaaatc ttaggcctat gtgttttaaa tacatccgtg
1441 aaagcaagaa tctggcattt tgacgaatca tctctaagct gcacatcttg tttcctcctc
1501 ttactttttc aggaagttga acactcgggc ggaggatttg ttttccactg atgaatcagc
1561 gtctcttgta ttttaaaata atccgctaaa accgcgcgac aacgacaaca cttttgtgag
1621 ataactgcaa cagttactta agtgatatga acctccctca tcttatgata ttcttgtagc
1681 attttcaaaa ctcagaaacc atagttttta cactttttag tatgatgctc attgttcatc
1741 ataactatga atgtattatt ggcactgaag ggaccttatc tcccagcttt ttgtttctca
1801 tctttttaga caggaatgga taaaatattt cagataaaag ctttactctc tttattgctt
1861 ccactcaa
//