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Arabidopsis thaliana chromosome 3, partial sequence

NCBI Reference Sequence: NC_003074.8

FASTA Graphics 

LOCUS       NC_003074               2004 bp    DNA     linear   CON 10-APR-2023
DEFINITION  Arabidopsis thaliana chromosome 3, partial sequence.
ACCESSION   NC_003074 REGION: 22092400..22094403
VERSION     NC_003074.8
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
            Assembly: GCF_000001735.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 2004)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2004)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2004)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to CP002686.
            
            On Jun 19, 2009 this sequence version replaced NC_003074.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: TAIR and Araport
            Annotation Status   :: Full annotation
            Annotation Pipeline :: Eukaryotic Annotation Propagation Pipeline
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..2004
                     /gene="MPK10"
                     /locus_tag="AT3G59790"
                     /gene_synonym="ATMPK10; MAP kinase 10"
                     /note="member of MAP Kinase"
                     /db_xref="Araport:AT3G59790"
                     /db_xref="GeneID:825148"
                     /db_xref="TAIR:AT3G59790"
     mRNA            join(1..272,545..674,765..902,986..1318,1411..1591,
                     1666..2004)
                     /gene="MPK10"
                     /locus_tag="AT3G59790"
                     /gene_synonym="ATMPK10; MAP kinase 10"
                     /product="MAP kinase 10"
                     /transcript_id="NM_115841.2"
                     /db_xref="GeneID:825148"
                     /db_xref="TAIR:AT3G59790"
                     /db_xref="Araport:AT3G59790"
     CDS             join(49..272,545..674,765..902,986..1318,1411..1591,
                     1666..1841)
                     /gene="MPK10"
                     /locus_tag="AT3G59790"
                     /gene_synonym="ATMPK10; MAP kinase 10"
                     /note="MAP kinase 10 (MPK10); CONTAINS InterPro DOMAIN/s:
                     JNK MAP kinase (InterPro:IPR008351),
                     Serine/threonine-protein kinase domain
                     (InterPro:IPR002290), Serine/threonine-protein kinase-like
                     domain (InterPro:IPR017442), Protein kinase-like domain
                     (InterPro:IPR011009), Serine/threonine-protein kinase,
                     active site (InterPro:IPR008271), MAP kinase, conserved
                     site (InterPro:IPR003527), Protein kinase, catalytic
                     domain (InterPro:IPR000719); BEST Arabidopsis thaliana
                     protein match is: MAP kinase 6 (TAIR:AT2G43790.1); Has
                     123160 Blast hits to 121852 proteins in 4728 species:
                     Archae - 108; Bacteria - 13196; Metazoa - 46727; Fungi -
                     12540; Plants - 29650; Viruses - 470; Other Eukaryotes -
                     20469 (source: NCBI BLink)."
                     /codon_start=1
                     /product="MAP kinase 10"
                     /protein_id="NP_191538.1"
                     /db_xref="GeneID:825148"
                     /db_xref="TAIR:AT3G59790"
                     /db_xref="Araport:AT3G59790"
                     /translation="MEPTNDAETLETQGEVTTAIWPSSQILKTTIDIPGTLSHDGRYI
                     QYNLFGHIFELPAKYKPPIRPIGRGACGIVCSAVDSETNEKVAIKKITQVFDNTIEAK
                     RTLREIKLLRHFDHENIVAIRDVILPPQRDSFEDVYIVNELMEFDLYRTLKSDQELTK
                     DHGMYFMYQILRGLKYIHSANVLHRDLKPSNLLLSTQCDLKICDFGLARATPESNLMT
                     EYVVTRWYRAPELLLGSSDYTAAIDVWSVGCIFMEIMNREPLFPGKDQVNQLRLLLEL
                     IGTPSEEELGSLSEYAKRYIRQLPTLPRQSFTEKFPNVPPLAIDLVEKMLTFDPKQRI
                     SVKEALAHPYLSSFHDITDEPECSEPFNFDLDEHPFSEEQFRELIYCEALAFNPETSN
                     D"
     gene            complement(1964..>2004)
                     /locus_tag="AT3G59800"
                     /db_xref="Araport:AT3G59800"
                     /db_xref="GeneID:825149"
                     /db_xref="TAIR:AT3G59800"
     mRNA            complement(1964..>2004)
                     /locus_tag="AT3G59800"
                     /product="stress response protein"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG450363.1,INSD:EG450409.1,INSD:EG450398.1,
                     INSD:EG450475.1,INSD:EL306768.1,INSD:EH888868.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AK176560.1,INSD:BT022040.1"
                     /transcript_id="NM_115842.4"
                     /db_xref="GeneID:825149"
                     /db_xref="TAIR:AT3G59800"
                     /db_xref="Araport:AT3G59800"
     mRNA            complement(1964..>2004)
                     /locus_tag="AT3G59800"
                     /product="stress response protein"
                     /transcript_id="NM_001339999.1"
                     /db_xref="GeneID:825149"
                     /db_xref="Araport:AT3G59800"
                     /db_xref="TAIR:AT3G59800"
ORIGIN      
        1 cttctctcaa cagaatagtt tgaggttgtg tgagacaaaa agaaaaccat ggagccaact
       61 aacgatgctg agacattgga aactcaagga gaggttacaa ccgctatttg gccgtcatct
      121 caaatcctca agacgactat cgatattccg gggactctca gccatgacgg cagatacatc
      181 cagtacaatc tatttgggca tatctttgaa ctccccgcaa agtataagcc accgattagg
      241 cctattggca gaggtgcttg tggcatcgtt tggtaatatc cttttaacag aattaatagt
      301 ttcatttctt ttcctaatca ttttgagcac tttagaatgt agatgccatg accatttttg
      361 tgtgtaattt atggtttggg ttgataagtt tcatcttttt atgagaaaag ttcaaatcgt
      421 ttctatcata gagatctcta aacagttatt ataccattca tgacttttat gttattcttg
      481 ttacttttaa aatttcctca cttgacacat tagtttttac ttttcttttt aacttttttt
      541 acagttcggc tgtggactcc gagaccaatg agaaggtagc aataaagaaa ataacgcaag
      601 tatttgataa cactatcgaa gcaaagagaa ctcttcgtga aatcaagctt cttcgtcact
      661 tcgatcatga gaatgttcgt ttgattttat aactattgtc tcaccttttt tcttttattt
      721 tgttattcat taaaagctaa ctatgtaata tcatttttct atagattgtt gcaatcagag
      781 acgtaatctt gcctcctcag agagattcat tcgaagatgt ttacattgtg aatgaattga
      841 tggagtttga cctttatcga accttaaaat cagatcaaga actaaccaaa gatcatggca
      901 tggtgtgtgt ttagagttat tgtttcttga aacttaaaaa tcattttgat tagtgagctt
      961 gacacaatct tcaaattttt ggcagtattt catgtaccaa atcctgcgcg gattaaagta
     1021 cattcattca gccaatgtgc tacacagaga tctaaaacca agcaatctcc tcttgagtac
     1081 acaatgtgac ttaaagattt gtgatttcgg gctcgctcgt gcaactcctg agagtaattt
     1141 aatgactgag tatgttgtca caagatggta ccgtgcacct gagcttctgt tgggctcttc
     1201 tgactatacc gcagcaatag atgtttggtc tgttggctgt attttcatgg aaataatgaa
     1261 ccgtgaaccg ctcttcccgg ggaaagatca agttaatcag cttcgtttgc ttctggaggt
     1321 agtaaagtaa aaccctttgt tgtgccaaga tcatattcgt tttttgtgat tcatgattag
     1381 cttaaaaagt cttgggacat tgttttgcag ctcattggca ctccatctga agaagagctt
     1441 ggatcgttga gtgaatacgc taagcgatac ataaggcagc ttcctacgct tcctcgccaa
     1501 tctttcactg agaaattccc gaacgtgcct cccttagcaa tagacttggt ggagaagatg
     1561 ctaacatttg atcctaaaca gagaatctca ggtcagtttc tgtctccata tagcctcttc
     1621 tgcagtttta tttggattct tatcatcagt tttgccactt tgcagttaaa gaagcacttg
     1681 ctcatccata ccttagctcg tttcacgaca ttaccgatga accagagtgc tcagagccct
     1741 tcaatttcga tttagatgaa catccattct ctgaggagca gtttagagag ttaatctact
     1801 gtgaagccct agctttcaac cctgaaacca gcaatgattg aaaaggacca tatctttgat
     1861 ccttgttctg tttttttctt ttccttctct gcttttcttt gaataatttc ccttttcatt
     1921 tcctttaatt ttttcatctc tcagaaattt tgttgtgcta agattttctg ctagattccc
     1981 ttttgatgtt gtcaaatttc attt
//
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