LOCUS NC_003074 2004 bp DNA linear CON 10-APR-2023
DEFINITION Arabidopsis thaliana chromosome 3, partial sequence.
ACCESSION NC_003074 REGION: 22092400..22094403
VERSION NC_003074.8
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
Assembly: GCF_000001735.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2004)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 2004)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2004)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2004)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to CP002686.
On Jun 19, 2009 this sequence version replaced NC_003074.7.
##Genome-Annotation-Data-START##
Annotation Provider :: TAIR and Araport
Annotation Status :: Full annotation
Annotation Pipeline :: Eukaryotic Annotation Propagation Pipeline
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2004
/organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..2004
/gene="MPK10"
/locus_tag="AT3G59790"
/gene_synonym="ATMPK10; MAP kinase 10"
/note="member of MAP Kinase"
/db_xref="Araport:AT3G59790"
/db_xref="GeneID:825148"
/db_xref="TAIR:AT3G59790"
mRNA join(1..272,545..674,765..902,986..1318,1411..1591,
1666..2004)
/gene="MPK10"
/locus_tag="AT3G59790"
/gene_synonym="ATMPK10; MAP kinase 10"
/product="MAP kinase 10"
/transcript_id="NM_115841.2"
/db_xref="GeneID:825148"
/db_xref="TAIR:AT3G59790"
/db_xref="Araport:AT3G59790"
CDS join(49..272,545..674,765..902,986..1318,1411..1591,
1666..1841)
/gene="MPK10"
/locus_tag="AT3G59790"
/gene_synonym="ATMPK10; MAP kinase 10"
/note="MAP kinase 10 (MPK10); CONTAINS InterPro DOMAIN/s:
JNK MAP kinase (InterPro:IPR008351),
Serine/threonine-protein kinase domain
(InterPro:IPR002290), Serine/threonine-protein kinase-like
domain (InterPro:IPR017442), Protein kinase-like domain
(InterPro:IPR011009), Serine/threonine-protein kinase,
active site (InterPro:IPR008271), MAP kinase, conserved
site (InterPro:IPR003527), Protein kinase, catalytic
domain (InterPro:IPR000719); BEST Arabidopsis thaliana
protein match is: MAP kinase 6 (TAIR:AT2G43790.1); Has
123160 Blast hits to 121852 proteins in 4728 species:
Archae - 108; Bacteria - 13196; Metazoa - 46727; Fungi -
12540; Plants - 29650; Viruses - 470; Other Eukaryotes -
20469 (source: NCBI BLink)."
/codon_start=1
/product="MAP kinase 10"
/protein_id="NP_191538.1"
/db_xref="GeneID:825148"
/db_xref="TAIR:AT3G59790"
/db_xref="Araport:AT3G59790"
/translation="MEPTNDAETLETQGEVTTAIWPSSQILKTTIDIPGTLSHDGRYI
QYNLFGHIFELPAKYKPPIRPIGRGACGIVCSAVDSETNEKVAIKKITQVFDNTIEAK
RTLREIKLLRHFDHENIVAIRDVILPPQRDSFEDVYIVNELMEFDLYRTLKSDQELTK
DHGMYFMYQILRGLKYIHSANVLHRDLKPSNLLLSTQCDLKICDFGLARATPESNLMT
EYVVTRWYRAPELLLGSSDYTAAIDVWSVGCIFMEIMNREPLFPGKDQVNQLRLLLEL
IGTPSEEELGSLSEYAKRYIRQLPTLPRQSFTEKFPNVPPLAIDLVEKMLTFDPKQRI
SVKEALAHPYLSSFHDITDEPECSEPFNFDLDEHPFSEEQFRELIYCEALAFNPETSN
D"
gene complement(1964..>2004)
/locus_tag="AT3G59800"
/db_xref="Araport:AT3G59800"
/db_xref="GeneID:825149"
/db_xref="TAIR:AT3G59800"
mRNA complement(1964..>2004)
/locus_tag="AT3G59800"
/product="stress response protein"
/inference="Similar to RNA sequence,
EST:INSD:EG450363.1,INSD:EG450409.1,INSD:EG450398.1,
INSD:EG450475.1,INSD:EL306768.1,INSD:EH888868.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK176560.1,INSD:BT022040.1"
/transcript_id="NM_115842.4"
/db_xref="GeneID:825149"
/db_xref="TAIR:AT3G59800"
/db_xref="Araport:AT3G59800"
mRNA complement(1964..>2004)
/locus_tag="AT3G59800"
/product="stress response protein"
/transcript_id="NM_001339999.1"
/db_xref="GeneID:825149"
/db_xref="Araport:AT3G59800"
/db_xref="TAIR:AT3G59800"
ORIGIN
1 cttctctcaa cagaatagtt tgaggttgtg tgagacaaaa agaaaaccat ggagccaact
61 aacgatgctg agacattgga aactcaagga gaggttacaa ccgctatttg gccgtcatct
121 caaatcctca agacgactat cgatattccg gggactctca gccatgacgg cagatacatc
181 cagtacaatc tatttgggca tatctttgaa ctccccgcaa agtataagcc accgattagg
241 cctattggca gaggtgcttg tggcatcgtt tggtaatatc cttttaacag aattaatagt
301 ttcatttctt ttcctaatca ttttgagcac tttagaatgt agatgccatg accatttttg
361 tgtgtaattt atggtttggg ttgataagtt tcatcttttt atgagaaaag ttcaaatcgt
421 ttctatcata gagatctcta aacagttatt ataccattca tgacttttat gttattcttg
481 ttacttttaa aatttcctca cttgacacat tagtttttac ttttcttttt aacttttttt
541 acagttcggc tgtggactcc gagaccaatg agaaggtagc aataaagaaa ataacgcaag
601 tatttgataa cactatcgaa gcaaagagaa ctcttcgtga aatcaagctt cttcgtcact
661 tcgatcatga gaatgttcgt ttgattttat aactattgtc tcaccttttt tcttttattt
721 tgttattcat taaaagctaa ctatgtaata tcatttttct atagattgtt gcaatcagag
781 acgtaatctt gcctcctcag agagattcat tcgaagatgt ttacattgtg aatgaattga
841 tggagtttga cctttatcga accttaaaat cagatcaaga actaaccaaa gatcatggca
901 tggtgtgtgt ttagagttat tgtttcttga aacttaaaaa tcattttgat tagtgagctt
961 gacacaatct tcaaattttt ggcagtattt catgtaccaa atcctgcgcg gattaaagta
1021 cattcattca gccaatgtgc tacacagaga tctaaaacca agcaatctcc tcttgagtac
1081 acaatgtgac ttaaagattt gtgatttcgg gctcgctcgt gcaactcctg agagtaattt
1141 aatgactgag tatgttgtca caagatggta ccgtgcacct gagcttctgt tgggctcttc
1201 tgactatacc gcagcaatag atgtttggtc tgttggctgt attttcatgg aaataatgaa
1261 ccgtgaaccg ctcttcccgg ggaaagatca agttaatcag cttcgtttgc ttctggaggt
1321 agtaaagtaa aaccctttgt tgtgccaaga tcatattcgt tttttgtgat tcatgattag
1381 cttaaaaagt cttgggacat tgttttgcag ctcattggca ctccatctga agaagagctt
1441 ggatcgttga gtgaatacgc taagcgatac ataaggcagc ttcctacgct tcctcgccaa
1501 tctttcactg agaaattccc gaacgtgcct cccttagcaa tagacttggt ggagaagatg
1561 ctaacatttg atcctaaaca gagaatctca ggtcagtttc tgtctccata tagcctcttc
1621 tgcagtttta tttggattct tatcatcagt tttgccactt tgcagttaaa gaagcacttg
1681 ctcatccata ccttagctcg tttcacgaca ttaccgatga accagagtgc tcagagccct
1741 tcaatttcga tttagatgaa catccattct ctgaggagca gtttagagag ttaatctact
1801 gtgaagccct agctttcaac cctgaaacca gcaatgattg aaaaggacca tatctttgat
1861 ccttgttctg tttttttctt ttccttctct gcttttcttt gaataatttc ccttttcatt
1921 tcctttaatt ttttcatctc tcagaaattt tgttgtgcta agattttctg ctagattccc
1981 ttttgatgtt gtcaaatttc attt
//