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Arabidopsis thaliana chromosome 2, partial sequence

NCBI Reference Sequence: NC_003071.7

FASTA Graphics 

LOCUS       NC_003071               2169 bp    DNA     linear   CON 10-APR-2023
DEFINITION  Arabidopsis thaliana chromosome 2, partial sequence.
ACCESSION   NC_003071 REGION: 11135624..11137792
VERSION     NC_003071.7
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
            Assembly: GCF_000001735.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2169)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2169)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2169)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to CP002685.
            
            On Jun 19, 2009 this sequence version replaced NC_003071.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: TAIR and Araport
            Annotation Status   :: Full annotation
            Annotation Pipeline :: Eukaryotic Annotation Propagation Pipeline
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..2169
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /note="member of Heat Stress Transcription Factor (Hsf)
                     family. Involved in response to misfolded protein
                     accumulation in the cytosol. Regulated by alternative
                     splicing and non-sense-mediated decay."
                     /db_xref="Araport:AT2G26150"
                     /db_xref="GeneID:817155"
                     /db_xref="TAIR:AT2G26150"
     mRNA            join(1..541,623..653,866..2169)
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /product="heat shock transcription factor A2"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR750725.1,INSD:AU239616.1,INSD:DR750726.1,
                     INSD:AU230946.1,INSD:BP854693.1,INSD:BP853897.1,
                     INSD:BP855201.2"
                     /inference="similar to RNA sequence, mRNA:INSD:AK118744.1"
                     /transcript_id="NM_001124916.2"
                     /db_xref="GeneID:817155"
                     /db_xref="TAIR:AT2G26150"
                     /db_xref="Araport:AT2G26150"
     mRNA            join(1..541,866..2169)
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /product="heat shock transcription factor A2"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AU230946.1,INSD:BP854693.1,INSD:BP853897.1,
                     INSD:EG494778.1"
                     /transcript_id="NM_128173.3"
                     /db_xref="GeneID:817155"
                     /db_xref="TAIR:AT2G26150"
                     /db_xref="Araport:AT2G26150"
     mRNA            join(11..541,623..653,866..1637,1807..2007)
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /product="heat shock transcription factor A2"
                     /transcript_id="NM_001336038.1"
                     /db_xref="GeneID:817155"
                     /db_xref="Araport:AT2G26150"
                     /db_xref="TAIR:AT2G26150"
     mRNA            join(11..541,866..1637,1807..2007)
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /product="heat shock transcription factor A2"
                     /transcript_id="NM_001336039.1"
                     /db_xref="GeneID:817155"
                     /db_xref="Araport:AT2G26150"
                     /db_xref="TAIR:AT2G26150"
     CDS             join(233..541,866..1594)
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /codon_start=1
                     /product="heat shock transcription factor A2"
                     /protein_id="NP_001324815.1"
                     /db_xref="Araport:AT2G26150"
                     /db_xref="GeneID:817155"
                     /db_xref="TAIR:AT2G26150"
                     /translation="MEELKVEMEEETVTFTGSVAASSSVGSSSSPRPMEGLNETGPPP
                     FLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNT
                     YGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFD
                     GEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNN
                     PNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDMEMLF
                     AAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPLDWDSQDLHDM
                     VDQMGFLGSEP"
     CDS             join(233..541,866..1594)
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR750725.1,INSD:AU239616.1,INSD:DR750726.1,
                     INSD:AU230946.1,INSD:BP854693.1,INSD:BP853897.1,
                     INSD:BP855201.2"
                     /inference="similar to RNA sequence, mRNA:INSD:AK118744.1"
                     /note="heat shock transcription factor A2 (HSFA2);
                     FUNCTIONS IN: DNA binding, transcription activator
                     activity, sequence-specific DNA binding transcription
                     factor activity; INVOLVED IN: in 7 processes; LOCATED IN:
                     nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED
                     DURING: 4 anthesis, C globular stage, petal
                     differentiation and expansion stage; CONTAINS InterPro
                     DOMAIN/s: Winged helix-turn-helix transcription repressor
                     DNA-binding (InterPro:IPR011991), Heat shock factor
                     (HSF)-type, DNA-binding (InterPro:IPR000232); BEST
                     Arabidopsis thaliana protein match is: heat shock
                     transcription factor A6B (TAIR:AT3G22830.1); Has 2162
                     Blast hits to 2147 proteins in 231 species: Archae - 0;
                     Bacteria - 0; Metazoa - 326; Fungi - 474; Plants - 849;
                     Viruses - 0; Other Eukaryotes - 513 (source: NCBI BLink)."
                     /codon_start=1
                     /product="heat shock transcription factor A2"
                     /protein_id="NP_180184.1"
                     /db_xref="Araport:AT2G26150"
                     /db_xref="GeneID:817155"
                     /db_xref="TAIR:AT2G26150"
                     /translation="MEELKVEMEEETVTFTGSVAASSSVGSSSSPRPMEGLNETGPPP
                     FLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNT
                     YGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFD
                     GEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNN
                     PNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDMEMLF
                     AAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPLDWDSQDLHDM
                     VDQMGFLGSEP"
     CDS             join(429..541,623..653,866..1594)
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /codon_start=1
                     /product="heat shock transcription factor A2"
                     /protein_id="NP_001324814.1"
                     /db_xref="Araport:AT2G26150"
                     /db_xref="GeneID:817155"
                     /db_xref="TAIR:AT2G26150"
                     /translation="MVVTALWCGILISSQQLSFHVTSSIAISQVLFVSSILIWVSYES
                     SAIKGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQY
                     GFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKA
                     LNNPNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDME
                     MLFAAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPLDWDSQDL
                     HDMVDQMGFLGSEP"
     CDS             join(429..541,623..653,866..1594)
                     /gene="HSFA2"
                     /locus_tag="AT2G26150"
                     /gene_synonym="ATHSFA2; heat shock transcription factor
                     A2; T19L18.4; T19L18_4"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AU230946.1,INSD:BP854693.1,INSD:BP853897.1,
                     INSD:EG494778.1"
                     /note="heat shock transcription factor A2 (HSFA2);
                     FUNCTIONS IN: DNA binding, transcription activator
                     activity, sequence-specific DNA binding transcription
                     factor activity; INVOLVED IN: in 7 processes; LOCATED IN:
                     endomembrane system, nucleus; EXPRESSED IN: 8 plant
                     structures; EXPRESSED DURING: 4 anthesis, C globular
                     stage, petal differentiation and expansion stage; CONTAINS
                     InterPro DOMAIN/s: Winged helix-turn-helix transcription
                     repressor DNA-binding (InterPro:IPR011991), Heat shock
                     factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST
                     Arabidopsis thaliana protein match is: heat shock
                     transcription factor A1D (TAIR:AT1G32330.1); Has 30201
                     Blast hits to 17322 proteins in 780 species: Archae - 12;
                     Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
                     5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="heat shock transcription factor A2"
                     /protein_id="NP_001118388.1"
                     /db_xref="Araport:AT2G26150"
                     /db_xref="GeneID:817155"
                     /db_xref="TAIR:AT2G26150"
                     /translation="MVVTALWCGILISSQQLSFHVTSSIAISQVLFVSSILIWVSYES
                     SAIKGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQY
                     GFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKA
                     LNNPNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDME
                     MLFAAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPLDWDSQDL
                     HDMVDQMGFLGSEP"
ORIGIN      
        1 tctctagaac cttctcttct ctccccttat aatttcattt ctctctcctc cacgcctcaa
       61 tctctcaact caaaactcaa cattttctga agaaagtcgc aaactttacc caaaacccag
      121 tttctaattt tagcaacaaa atcaaaaata tctacttttg tttctcgaaa gttacgaaat
      181 tcatacaatc tagcttatct ctgagcttat ggatttgaga taaacaacga aaatggaaga
      241 actgaaagtg gaaatggagg aagaaacggt gacgtttact ggttctgtag cggcttcttc
      301 atctgtagga tcctcttcct ctcctagacc aatggaaggg cttaacgaaa cagggccacc
      361 accgtttctg actaagactt acgaaatggt ggaagatccg gcgacggaca cggtggtttc
      421 ttggagtaat ggtcgtaaca gctttgtggt gtgggattct cataagttct caacaactct
      481 ccttccacgt tacttcaagc atagcaattt ctcaagtttt attcgtcagc tcaatactta
      541 tgtaagtacc tctttgcttc cttatatcta cttagtcttg tttctgtttt tgtttctaat
      601 ttttaatttt ggatttcttt agatgggttt cctatgagtc ttcagctata aaggttagtt
      661 ctttaagctt ttaagtggct aaattgaaat tagatgcatt gagattttgg tcatatgtta
      721 agagaatcat ttaacataaa ctctgttcaa tcctctgttt ctgaagttca aaatgtgttt
      781 ggtagtaaaa acagaatctt ggaatgataa gtaaggactc tgcctcaagt tcagtagctg
      841 atgaaacttg ttttggtgat tgcagggatt cagaaagatt gatccagata gatgggaatt
      901 tgcaaatgaa gggtttttag caggacaaaa gcatctcttg aagaacatca aaagaaggag
      961 gaacatgggt ttgcagaatg tgaatcagca aggatctggg atgtcatgtg ttgaggttgg
     1021 gcaatacggt ttcgacgggg aggttgagag gttgaagagg gatcatggtg tgcttgtagc
     1081 tgaggtagtt aggttgaggc aacagcaaca cagctccaag agtcaagttg cagctatgga
     1141 gcaacggttg cttgttactg agaagagaca gcagcagatg atgacgttcc ttgccaaggc
     1201 gttgaacaat ccgaactttg ttcagcagtt tgcggttatg agtaaagaga agaagagttt
     1261 gtttggtttg gatgtgggga ggaaacggag gcttacttct actccaagct tggggactat
     1321 ggaggagaat ttgttacatg atcaagagtt tgatagaatg aaggatgata tggaaatgtt
     1381 gttcgctgca gcaatcgatg atgaggcgaa taattcgatg cctactaagg aggaacaatg
     1441 tttggaggct atgaatgtga tgatgagaga tggtaatttg gaagcagcgt tggatgtgaa
     1501 agtggaagat ttggttggtt cgcctttgga ttgggacagc caagatctac atgacatggt
     1561 tgatcaaatg ggttttcttg gttcggaacc ttaactatac ggtattaaca catctacttg
     1621 ttgcggtcta agttatggta atgctaccac ttttatttac tagttgaatt gtttgtttgt
     1681 ttgttttgac tcaaggaaga gtcattgagt gtggtttgtt gtacatttgt gttttcttgt
     1741 tctgatgaat aaaaaactct gatttcgttt gacaatttta atggttgttt gtttttcctt
     1801 ctccagacct tagaagcatg agatggagct gcgataagag tatcaagctc cgtgtctact
     1861 tatcttagta ctcactttgg tcaacattta ggagtttatg taattagtaa cttttgctaa
     1921 gctttcttag agaaaagagg tcatgatact aagaaagtat ttctttgaat gtaacacttt
     1981 taattttgaa gttcataaaa tttacaaact tgttgatcta gttacttggg acataattgg
     2041 aactaaatgg cctgtgtgat atttttgtag atcaagttcc tgctgcatcc tagtcctatg
     2101 taacaactca cgacaacttc aaaaaaagaa aaatgttaaa ttagattcaa gaaaaaataa
     2161 ctcatgaca
//
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