LOCUS NC_003071 2169 bp DNA linear CON 10-APR-2023
DEFINITION Arabidopsis thaliana chromosome 2, partial sequence.
ACCESSION NC_003071 REGION: 11135624..11137792
VERSION NC_003071.7
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
Assembly: GCF_000001735.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2169)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 2169)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2169)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2169)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to CP002685.
On Jun 19, 2009 this sequence version replaced NC_003071.6.
##Genome-Annotation-Data-START##
Annotation Provider :: TAIR and Araport
Annotation Status :: Full annotation
Annotation Pipeline :: Eukaryotic Annotation Propagation Pipeline
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2169
/organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..2169
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/note="member of Heat Stress Transcription Factor (Hsf)
family. Involved in response to misfolded protein
accumulation in the cytosol. Regulated by alternative
splicing and non-sense-mediated decay."
/db_xref="Araport:AT2G26150"
/db_xref="GeneID:817155"
/db_xref="TAIR:AT2G26150"
mRNA join(1..541,623..653,866..2169)
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/product="heat shock transcription factor A2"
/inference="Similar to RNA sequence,
EST:INSD:DR750725.1,INSD:AU239616.1,INSD:DR750726.1,
INSD:AU230946.1,INSD:BP854693.1,INSD:BP853897.1,
INSD:BP855201.2"
/inference="similar to RNA sequence, mRNA:INSD:AK118744.1"
/transcript_id="NM_001124916.2"
/db_xref="GeneID:817155"
/db_xref="TAIR:AT2G26150"
/db_xref="Araport:AT2G26150"
mRNA join(1..541,866..2169)
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/product="heat shock transcription factor A2"
/inference="Similar to RNA sequence,
EST:INSD:AU230946.1,INSD:BP854693.1,INSD:BP853897.1,
INSD:EG494778.1"
/transcript_id="NM_128173.3"
/db_xref="GeneID:817155"
/db_xref="TAIR:AT2G26150"
/db_xref="Araport:AT2G26150"
mRNA join(11..541,623..653,866..1637,1807..2007)
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/product="heat shock transcription factor A2"
/transcript_id="NM_001336038.1"
/db_xref="GeneID:817155"
/db_xref="Araport:AT2G26150"
/db_xref="TAIR:AT2G26150"
mRNA join(11..541,866..1637,1807..2007)
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/product="heat shock transcription factor A2"
/transcript_id="NM_001336039.1"
/db_xref="GeneID:817155"
/db_xref="Araport:AT2G26150"
/db_xref="TAIR:AT2G26150"
CDS join(233..541,866..1594)
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/codon_start=1
/product="heat shock transcription factor A2"
/protein_id="NP_001324815.1"
/db_xref="Araport:AT2G26150"
/db_xref="GeneID:817155"
/db_xref="TAIR:AT2G26150"
/translation="MEELKVEMEEETVTFTGSVAASSSVGSSSSPRPMEGLNETGPPP
FLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNT
YGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFD
GEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNN
PNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDMEMLF
AAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPLDWDSQDLHDM
VDQMGFLGSEP"
CDS join(233..541,866..1594)
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/inference="Similar to RNA sequence,
EST:INSD:DR750725.1,INSD:AU239616.1,INSD:DR750726.1,
INSD:AU230946.1,INSD:BP854693.1,INSD:BP853897.1,
INSD:BP855201.2"
/inference="similar to RNA sequence, mRNA:INSD:AK118744.1"
/note="heat shock transcription factor A2 (HSFA2);
FUNCTIONS IN: DNA binding, transcription activator
activity, sequence-specific DNA binding transcription
factor activity; INVOLVED IN: in 7 processes; LOCATED IN:
nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED
DURING: 4 anthesis, C globular stage, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Winged helix-turn-helix transcription repressor
DNA-binding (InterPro:IPR011991), Heat shock factor
(HSF)-type, DNA-binding (InterPro:IPR000232); BEST
Arabidopsis thaliana protein match is: heat shock
transcription factor A6B (TAIR:AT3G22830.1); Has 2162
Blast hits to 2147 proteins in 231 species: Archae - 0;
Bacteria - 0; Metazoa - 326; Fungi - 474; Plants - 849;
Viruses - 0; Other Eukaryotes - 513 (source: NCBI BLink)."
/codon_start=1
/product="heat shock transcription factor A2"
/protein_id="NP_180184.1"
/db_xref="Araport:AT2G26150"
/db_xref="GeneID:817155"
/db_xref="TAIR:AT2G26150"
/translation="MEELKVEMEEETVTFTGSVAASSSVGSSSSPRPMEGLNETGPPP
FLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNT
YGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFD
GEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNN
PNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDMEMLF
AAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPLDWDSQDLHDM
VDQMGFLGSEP"
CDS join(429..541,623..653,866..1594)
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/codon_start=1
/product="heat shock transcription factor A2"
/protein_id="NP_001324814.1"
/db_xref="Araport:AT2G26150"
/db_xref="GeneID:817155"
/db_xref="TAIR:AT2G26150"
/translation="MVVTALWCGILISSQQLSFHVTSSIAISQVLFVSSILIWVSYES
SAIKGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQY
GFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKA
LNNPNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDME
MLFAAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPLDWDSQDL
HDMVDQMGFLGSEP"
CDS join(429..541,623..653,866..1594)
/gene="HSFA2"
/locus_tag="AT2G26150"
/gene_synonym="ATHSFA2; heat shock transcription factor
A2; T19L18.4; T19L18_4"
/inference="Similar to RNA sequence,
EST:INSD:AU230946.1,INSD:BP854693.1,INSD:BP853897.1,
INSD:EG494778.1"
/note="heat shock transcription factor A2 (HSFA2);
FUNCTIONS IN: DNA binding, transcription activator
activity, sequence-specific DNA binding transcription
factor activity; INVOLVED IN: in 7 processes; LOCATED IN:
endomembrane system, nucleus; EXPRESSED IN: 8 plant
structures; EXPRESSED DURING: 4 anthesis, C globular
stage, petal differentiation and expansion stage; CONTAINS
InterPro DOMAIN/s: Winged helix-turn-helix transcription
repressor DNA-binding (InterPro:IPR011991), Heat shock
factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST
Arabidopsis thaliana protein match is: heat shock
transcription factor A1D (TAIR:AT1G32330.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/codon_start=1
/product="heat shock transcription factor A2"
/protein_id="NP_001118388.1"
/db_xref="Araport:AT2G26150"
/db_xref="GeneID:817155"
/db_xref="TAIR:AT2G26150"
/translation="MVVTALWCGILISSQQLSFHVTSSIAISQVLFVSSILIWVSYES
SAIKGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQY
GFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKA
LNNPNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFDRMKDDME
MLFAAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPLDWDSQDL
HDMVDQMGFLGSEP"
ORIGIN
1 tctctagaac cttctcttct ctccccttat aatttcattt ctctctcctc cacgcctcaa
61 tctctcaact caaaactcaa cattttctga agaaagtcgc aaactttacc caaaacccag
121 tttctaattt tagcaacaaa atcaaaaata tctacttttg tttctcgaaa gttacgaaat
181 tcatacaatc tagcttatct ctgagcttat ggatttgaga taaacaacga aaatggaaga
241 actgaaagtg gaaatggagg aagaaacggt gacgtttact ggttctgtag cggcttcttc
301 atctgtagga tcctcttcct ctcctagacc aatggaaggg cttaacgaaa cagggccacc
361 accgtttctg actaagactt acgaaatggt ggaagatccg gcgacggaca cggtggtttc
421 ttggagtaat ggtcgtaaca gctttgtggt gtgggattct cataagttct caacaactct
481 ccttccacgt tacttcaagc atagcaattt ctcaagtttt attcgtcagc tcaatactta
541 tgtaagtacc tctttgcttc cttatatcta cttagtcttg tttctgtttt tgtttctaat
601 ttttaatttt ggatttcttt agatgggttt cctatgagtc ttcagctata aaggttagtt
661 ctttaagctt ttaagtggct aaattgaaat tagatgcatt gagattttgg tcatatgtta
721 agagaatcat ttaacataaa ctctgttcaa tcctctgttt ctgaagttca aaatgtgttt
781 ggtagtaaaa acagaatctt ggaatgataa gtaaggactc tgcctcaagt tcagtagctg
841 atgaaacttg ttttggtgat tgcagggatt cagaaagatt gatccagata gatgggaatt
901 tgcaaatgaa gggtttttag caggacaaaa gcatctcttg aagaacatca aaagaaggag
961 gaacatgggt ttgcagaatg tgaatcagca aggatctggg atgtcatgtg ttgaggttgg
1021 gcaatacggt ttcgacgggg aggttgagag gttgaagagg gatcatggtg tgcttgtagc
1081 tgaggtagtt aggttgaggc aacagcaaca cagctccaag agtcaagttg cagctatgga
1141 gcaacggttg cttgttactg agaagagaca gcagcagatg atgacgttcc ttgccaaggc
1201 gttgaacaat ccgaactttg ttcagcagtt tgcggttatg agtaaagaga agaagagttt
1261 gtttggtttg gatgtgggga ggaaacggag gcttacttct actccaagct tggggactat
1321 ggaggagaat ttgttacatg atcaagagtt tgatagaatg aaggatgata tggaaatgtt
1381 gttcgctgca gcaatcgatg atgaggcgaa taattcgatg cctactaagg aggaacaatg
1441 tttggaggct atgaatgtga tgatgagaga tggtaatttg gaagcagcgt tggatgtgaa
1501 agtggaagat ttggttggtt cgcctttgga ttgggacagc caagatctac atgacatggt
1561 tgatcaaatg ggttttcttg gttcggaacc ttaactatac ggtattaaca catctacttg
1621 ttgcggtcta agttatggta atgctaccac ttttatttac tagttgaatt gtttgtttgt
1681 ttgttttgac tcaaggaaga gtcattgagt gtggtttgtt gtacatttgt gttttcttgt
1741 tctgatgaat aaaaaactct gatttcgttt gacaatttta atggttgttt gtttttcctt
1801 ctccagacct tagaagcatg agatggagct gcgataagag tatcaagctc cgtgtctact
1861 tatcttagta ctcactttgg tcaacattta ggagtttatg taattagtaa cttttgctaa
1921 gctttcttag agaaaagagg tcatgatact aagaaagtat ttctttgaat gtaacacttt
1981 taattttgaa gttcataaaa tttacaaact tgttgatcta gttacttggg acataattgg
2041 aactaaatgg cctgtgtgat atttttgtag atcaagttcc tgctgcatcc tagtcctatg
2101 taacaactca cgacaacttc aaaaaaagaa aaatgttaaa ttagattcaa gaaaaaataa
2161 ctcatgaca
//