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Mus musculus strain C57BL/6J chromosome 14, GRCm39

NCBI Reference Sequence: NC_000080.7

FASTA Graphics 

LOCUS       NC_000080                 96 bp    DNA     linear   CON 07-FEB-2024
DEFINITION  Mus musculus strain C57BL/6J chromosome 14, GRCm39.
ACCESSION   NC_000080 REGION: 115281283..115281378
VERSION     NC_000080.7
DBLINK      BioProject: PRJNA169
            Assembly: GCF_000001635.27
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 96)
  AUTHORS   Church,D.M., Schneider,V.A., Graves,T., Auger,K., Cunningham,F.,
            Bouk,N., Chen,H.C., Agarwala,R., McLaren,W.M., Ritchie,G.R.,
            Albracht,D., Kremitzki,M., Rock,S., Kotkiewicz,H., Kremitzki,C.,
            Wollam,A., Trani,L., Fulton,L., Fulton,R., Matthews,L.,
            Whitehead,S., Chow,W., Torrance,J., Dunn,M., Harden,G.,
            Threadgold,G., Wood,J., Collins,J., Heath,P., Griffiths,G.,
            Pelan,S., Grafham,D., Eichler,E.E., Weinstock,G., Mardis,E.R.,
            Wilson,R.K., Howe,K., Flicek,P. and Hubbard,T.
  TITLE     Modernizing reference genome assemblies
  JOURNAL   PLoS Biol. 9 (7), e1001091 (2011)
   PUBMED   21750661
REFERENCE   2  (bases 1 to 96)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol. 7 (5), e1000112 (2009)
   PUBMED   19468303
REFERENCE   3  (bases 1 to 96)
  CONSRTM   Genome Reference Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2020) NCBI, NIH, Bethesda, MD 20892, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CM001007.3.
            
            On Sep 22, 2020 this sequence version replaced NC_000080.6.
            Assembly Name: GRCm39
            The DNA sequence is composed of genomic sequence, primarily
            finished clones that were sequenced as part of the Mouse Genome
            Project. PCR products and WGS shotgun sequence have been added
            where necessary to fill gaps or correct errors. All such additions
            are manually curated by GRC staff. For more information see:
            https://genomereference.org.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..96
                     /organism="Mus musculus"
                     /mol_type="genomic DNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..96
                     /gene="Mir18"
                     /gene_synonym="mir-18a; Mirn18; mmu-mir-18; mmu-mir-18a"
                     /note="microRNA 18; Derived by automated computational
                     analysis using gene prediction method: BestRefSeq."
                     /db_xref="GeneID:387135"
                     /db_xref="MGI:MGI:2676844"
                     /db_xref="miRBase:MI0000567"
     precursor_RNA   1..96
                     /gene="Mir18"
                     /gene_synonym="mir-18a; Mirn18; mmu-mir-18; mmu-mir-18a"
                     /product="microRNA 18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefSeq."
                     /transcript_id="NR_029736.1"
                     /db_xref="GeneID:387135"
                     /db_xref="MGI:MGI:2676844"
                     /db_xref="miRBase:MI0000567"
     ncRNA           17..39
                     /ncRNA_class="miRNA"
                     /gene="Mir18"
                     /gene_synonym="mir-18a; Mirn18; mmu-mir-18; mmu-mir-18a"
                     /product="mmu-miR-18a-5p"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefSeq."
                     /db_xref="GeneID:387135"
                     /db_xref="miRBase:MIMAT0000528"
                     /db_xref="MGI:MGI:2676844"
                     /db_xref="miRBase:MI0000567"
     ncRNA           58..79
                     /ncRNA_class="miRNA"
                     /gene="Mir18"
                     /gene_synonym="mir-18a; Mirn18; mmu-mir-18; mmu-mir-18a"
                     /product="mmu-miR-18a-3p"
                     /note="Derived by automated computational analysis using
                     gene prediction method: BestRefSeq."
                     /db_xref="GeneID:387135"
                     /db_xref="miRBase:MIMAT0004626"
                     /db_xref="MGI:MGI:2676844"
                     /db_xref="miRBase:MI0000567"
ORIGIN      
        1 tgcgtgcttt ttgttctaag gtgcatctag tgcagatagt gaagtagact agcatctact
       61 gccctaagtg ctccttctgg cataagaagt tatgtc
//
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