LOCUS NC_000080 96 bp DNA linear CON 07-FEB-2024
DEFINITION Mus musculus strain C57BL/6J chromosome 14, GRCm39.
ACCESSION NC_000080 REGION: 115281283..115281378
VERSION NC_000080.7
DBLINK BioProject: PRJNA169
Assembly: GCF_000001635.27
KEYWORDS RefSeq.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 96)
AUTHORS Church,D.M., Schneider,V.A., Graves,T., Auger,K., Cunningham,F.,
Bouk,N., Chen,H.C., Agarwala,R., McLaren,W.M., Ritchie,G.R.,
Albracht,D., Kremitzki,M., Rock,S., Kotkiewicz,H., Kremitzki,C.,
Wollam,A., Trani,L., Fulton,L., Fulton,R., Matthews,L.,
Whitehead,S., Chow,W., Torrance,J., Dunn,M., Harden,G.,
Threadgold,G., Wood,J., Collins,J., Heath,P., Griffiths,G.,
Pelan,S., Grafham,D., Eichler,E.E., Weinstock,G., Mardis,E.R.,
Wilson,R.K., Howe,K., Flicek,P. and Hubbard,T.
TITLE Modernizing reference genome assemblies
JOURNAL PLoS Biol. 9 (7), e1001091 (2011)
PUBMED 21750661
REFERENCE 2 (bases 1 to 96)
AUTHORS Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
Eichler,E.E. and Ponting,C.P.
CONSRTM Mouse Genome Sequencing Consortium
TITLE Lineage-specific biology revealed by a finished genome assembly of
the mouse
JOURNAL PLoS Biol. 7 (5), e1000112 (2009)
PUBMED 19468303
REFERENCE 3 (bases 1 to 96)
CONSRTM Genome Reference Consortium
TITLE Direct Submission
JOURNAL Submitted (24-JUN-2020) NCBI, NIH, Bethesda, MD 20892, USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CM001007.3.
On Sep 22, 2020 this sequence version replaced NC_000080.6.
Assembly Name: GRCm39
The DNA sequence is composed of genomic sequence, primarily
finished clones that were sequenced as part of the Mouse Genome
Project. PCR products and WGS shotgun sequence have been added
where necessary to fill gaps or correct errors. All such additions
are manually curated by GRC staff. For more information see:
https://genomereference.org.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_000001635.27-RS_2024_02
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Best-placed RefSeq; Gnomon;
RefSeqFE; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 02/01/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..96
/organism="Mus musculus"
/mol_type="genomic DNA"
/strain="C57BL/6J"
/db_xref="taxon:10090"
/chromosome="14"
gene 1..96
/gene="Mir18"
/gene_synonym="mir-18a; Mirn18; mmu-mir-18; mmu-mir-18a"
/note="microRNA 18; Derived by automated computational
analysis using gene prediction method: BestRefSeq."
/db_xref="GeneID:387135"
/db_xref="MGI:MGI:2676844"
/db_xref="miRBase:MI0000567"
precursor_RNA 1..96
/gene="Mir18"
/gene_synonym="mir-18a; Mirn18; mmu-mir-18; mmu-mir-18a"
/product="microRNA 18"
/note="Derived by automated computational analysis using
gene prediction method: BestRefSeq."
/transcript_id="NR_029736.1"
/db_xref="GeneID:387135"
/db_xref="MGI:MGI:2676844"
/db_xref="miRBase:MI0000567"
ncRNA 17..39
/ncRNA_class="miRNA"
/gene="Mir18"
/gene_synonym="mir-18a; Mirn18; mmu-mir-18; mmu-mir-18a"
/product="mmu-miR-18a-5p"
/note="Derived by automated computational analysis using
gene prediction method: BestRefSeq."
/db_xref="GeneID:387135"
/db_xref="miRBase:MIMAT0000528"
/db_xref="MGI:MGI:2676844"
/db_xref="miRBase:MI0000567"
ncRNA 58..79
/ncRNA_class="miRNA"
/gene="Mir18"
/gene_synonym="mir-18a; Mirn18; mmu-mir-18; mmu-mir-18a"
/product="mmu-miR-18a-3p"
/note="Derived by automated computational analysis using
gene prediction method: BestRefSeq."
/db_xref="GeneID:387135"
/db_xref="miRBase:MIMAT0004626"
/db_xref="MGI:MGI:2676844"
/db_xref="miRBase:MI0000567"
ORIGIN
1 tgcgtgcttt ttgttctaag gtgcatctag tgcagatagt gaagtagact agcatctact
61 gccctaagtg ctccttctgg cataagaagt tatgtc
//