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TSA: Macaca mulatta Mamu_253559 mRNA sequence

GenBank: JV580710.1

FASTA Graphics 

LOCUS       JV580710                1025 bp    mRNA    linear   TSA 04-NOV-2014
DEFINITION  TSA: Macaca mulatta Mamu_253559 mRNA sequence.
ACCESSION   JV580710
VERSION     JV580710.1
DBLINK      BioProject: PRJNA77627
            Sequence Read Archive: SRR353359
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Zimin,A.V., Cornish,A.S., Maudhoo,M.D., Gibbs,R.M., Zhang,X.,
            Pandey,S., Meehan,D.T., Wipfler,K., Bosinger,S.E., Johnson,Z.P.,
            Tharp,G.K., Marcais,G., Roberts,M., Ferguson,B., Fox,H.S.,
            Treangen,T., Salzberg,S.L., Yorke,J.A. and Norgren,R.B. Jr.
  TITLE     A new rhesus macaque assembly and annotation for next-generation
            sequencing analyses
  JOURNAL   Biol. Direct 9 (1), 20 (2014)
   PUBMED   25319552
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Pandey,S., Maudhoo,M.D., Guda,C., Ferguson,B., Fox,H. and
            Norgren,R.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2012) Genetics, Cell Biology and Anatomy,
            University of Nebraska Medical Center, 985805 Nebraska Medical
            Center, Omaha, NE 68198-5805, USA
COMMENT     All reads were aligned with the human RefSeq mRNA sequences using
            BLAST. For read lengths of 76 bp, if the alignment length was 70 or
            less, the read was filtered from the input file. For read lengths
            of 100 bp, if the alignment length was 90 or less, the read was
            filtered from the input file. For paired end sequences, if one
            sequence was filtered, its pair was also filtered. Velveth was
            performed as recommended. kmer was set at 29 for single end
            sequences and 31 for paired end sequences. The output files from
            Velveth were passed to Velvetg. After performing Velvetg, this
            output file was passed to Oases where the final assembly was
            performed. Default parameters were used for Velvetg and Oases.
            
            ##Assembly-Data-START##
            Assembly Method       :: Velvet v.1.1.05; Oases v.0.1.22
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Macaca mulatta"
                     /mol_type="mRNA"
                     /isolation_source="BF20336"
                     /db_xref="taxon:9544"
                     /tissue_type="brain"
                     /geo_loc_name="India"
ORIGIN      
        1 tgagcatcaa gaaagttacc tctgaggatc tcaagcgcag ctatgtctgt catgctagaa
       61 gtgccaaagg cgaagttgcc aaagcagcca cggtgaagca gaaagtgccg gctccaagat
      121 acacagtgga actggcttgt ggttttggag ccacagtcct gctagtggta attctcattg
      181 ttgtttacca tgtttactgg ctagagatgg tcctttttta ccgggctcat tttggaacag
      241 atgaaaccat tttagatggg aaagagtatg atatttatgt atcctatgcg aggaatgctg
      301 aagaagaaga atttgtatta ctgaccctcc gtggagtttt ggagaatgaa tttggataca
      361 agctatgcat ctttgaccga gacagtctgc ctgggggaaa tacagtggaa gcagtttttg
      421 atttcattca gagaagcaga aggatgattg ttgtcctgag tcctgactat gtgacagaaa
      481 agagcatcag catgctggag tttaaactgg gtgtcatgtg ccagaactcc attgccacca
      541 agctcattgt ggttgagtac cgtccccttg agcacccgca cccaggcatt cttcagctca
      601 aggagtctgt gtcttttgtg agctggaagg gagaaaagtc caaacattct ggctctaaat
      661 tctggaaagc tttgcggttg gctcttccac tgagaagtct gagtgccagt tccggctgga
      721 atgagagctg ctcttcccag tctgacatca gtctggacca cgttcaaagg aggagaagcc
      781 gtttgaaaga gcccccagaa cttcagagct cagagagggt tgcaggtagc cctccggccc
      841 caggcacaat gtccaagcac cgagggaagt cctctgccac ctgccgctgt tgtgtcacct
      901 actgtgaagg agagaatcac cttaggaaca agagccgggc agagattcat aaccagcccc
      961 agtgggagac gcacctctgt aagcctgttt cccaagagtc agagactcaa tggatacaaa
     1021 atggc
//
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Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the IL1RAP gene (NM_001032960.1).

More about the IL1RAP gene

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