LOCUS JV565994 3173 bp mRNA linear TSA 04-NOV-2014
DEFINITION TSA: Macaca mulatta Mamu_243399 mRNA sequence.
ACCESSION JV565994
VERSION JV565994.1
DBLINK BioProject: PRJNA77627
Sequence Read Archive: SRR353359
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Macaca mulatta (Rhesus monkey)
ORGANISM Macaca mulatta
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
REFERENCE 1 (bases 1 to 3173)
AUTHORS Zimin,A.V., Cornish,A.S., Maudhoo,M.D., Gibbs,R.M., Zhang,X.,
Pandey,S., Meehan,D.T., Wipfler,K., Bosinger,S.E., Johnson,Z.P.,
Tharp,G.K., Marcais,G., Roberts,M., Ferguson,B., Fox,H.S.,
Treangen,T., Salzberg,S.L., Yorke,J.A. and Norgren,R.B. Jr.
TITLE A new rhesus macaque assembly and annotation for next-generation
sequencing analyses
JOURNAL Biol. Direct 9 (1), 20 (2014)
PUBMED 25319552
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3173)
AUTHORS Pandey,S., Maudhoo,M.D., Guda,C., Ferguson,B., Fox,H. and
Norgren,R.B.
TITLE Direct Submission
JOURNAL Submitted (30-APR-2012) Genetics, Cell Biology and Anatomy,
University of Nebraska Medical Center, 985805 Nebraska Medical
Center, Omaha, NE 68198-5805, USA
COMMENT All reads were aligned with the human RefSeq mRNA sequences using
BLAST. For read lengths of 76 bp, if the alignment length was 70 or
less, the read was filtered from the input file. For read lengths
of 100 bp, if the alignment length was 90 or less, the read was
filtered from the input file. For paired end sequences, if one
sequence was filtered, its pair was also filtered. Velveth was
performed as recommended. kmer was set at 29 for single end
sequences and 31 for paired end sequences. The output files from
Velveth were passed to Velvetg. After performing Velvetg, this
output file was passed to Oases where the final assembly was
performed. Default parameters were used for Velvetg and Oases.
##Assembly-Data-START##
Assembly Method :: Velvet v.1.1.05; Oases v.0.1.22
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3173
/organism="Macaca mulatta"
/mol_type="mRNA"
/isolation_source="BF20336"
/db_xref="taxon:9544"
/tissue_type="brain"
/geo_loc_name="India"
ORIGIN
1 ccgcggcgca cttggacttc cctctccatt cgccagccgc cttgctcccg gtccccacgg
61 ctgcaaactg atctggcgcg gggggaggag gagagcgcag gcgagcgaac ccgcgagaga
121 gggagagagc gagagagcga gcgagcgagc aagagcgaga gcgagacagc cgggaggcag
181 agggagtagt gaccgccttc cggagccggg attcatgcct gtcctcggga ccagcgaagg
241 ggactttacg gctgagtatg agccaggctg ctaggagcca ggtaccccca cgcctgcagt
301 ccccgcgccg tgcccggaat gcgagctgga cgcagggctt tcccaagttc ccaccgagcc
361 gaataaaaag cgtccgcccg cagctctccg ccaaacacgg acattgactc caggactcca
421 cagaatggag caagaatgag aggaaaaagg ccggcagaaa agcatgaact ggaggtttgt
481 tgagctcctc tacttcctgt ttatatgggg ccgtatctca gtgcagccct cccaccagga
541 accagctggg acagaccaac atgtctccaa ggaatttgat tggctcattt cagacagggg
601 gcctttccac cactccagga gctacctatc ctttgtggaa agacaccgtc aaggatttac
661 aaccagatat aaaatataca gggagtttgc ccgttggaag gtgaggaaca cagccatcga
721 gaggagagat ctggcccccc atccagtgcc cctcatgccg gagtttcaaa ggagcatccg
781 cctgctcggc aggagaccca ccactcagca gttcatcgat accatcatca aaaagtacgg
841 cacccacctg ctcatctcag ccacattggg aggggaggag gctttgacca tgtacatgga
901 caaaagtcgc ctcgacagga agtcagggaa tgccactcaa agtgttgaag ctctgcacca
961 gctcgcatca tcctactttg ttgaccgtga tggcaccatg aggaggcttc atgagatcca
1021 gatatcaact ggagcaatca aggtcacaga gacacgcact gggcctctgg gctgtaacag
1081 ctatgacaat ctggactctg tgagttccgt ccttctgcaa agcacggaga gcaaactgca
1141 ccttcaaggt cttcagataa tctttcctca gtatctgcaa gagaagtttg tccagtcggc
1201 cttgagctat atcatgtgca atggggaggg ggagtacctg tgccagaaca gccagtgtcg
1261 atgccaatgt gccgaggagt ttccgcagtg caactgcccc atcacggaca tccagatcat
1321 ggagtacacg ctggccaaca tggccaagtc ttgggctgaa gcttataagg acctggagaa
1381 ttcagatgag tttaaatcat ttatgaagcg cctccccagc aaccacttcc tgaccatcgg
1441 gagcatccat cagcactggg gcaatgactg ggacctgcag aaccgctaca agctcctgca
1501 gagtgccaca gaggcacaga gacaaaagat ccaacgcact gcccgcaagc ttttcggcct
1561 cagtgtacgc tgtcgccaca atcccaacca ccagctgcct agagagagga caattcagca
1621 gtggcttgca agggtccagt cgctcctcta ctgtaatgag aatgggtttt ggggaacctt
1681 cctggagagc cagcggagct gcgtgtgcca cggcagcacc acgctgtgcc agcgccccat
1741 cccctgcgtg ataggcggga acaacagctg tgccatgtgc agcctggcca acatctccct
1801 ctgtggctcc tgcaacaagg gctacaagct gtaccgaggc cgctgcgaac cacagaacgt
1861 ggactcggag cggagcgagc agttcatcag ctttgagacc gacctggact tccaggacct
1921 ggagctgaag tacctgctgc agaagatgga ctcgcgcctc tacgtccaca ccaccttcat
1981 cagcaacgag atccgcctcg acaccttctt tgaccctcgg tggcgcaagc gcatgtccct
2041 cactctcaag agcaacaaga accgcatgga cttcatccac atggtgatcg gcatgtccat
2101 gcgcatctgc cagatgcgca acagcagcct ggaccccatg ttctttgtct atgtcaaccc
2161 ttttagcggg agccattcgg agggctggaa catgcccttc ggggaatttg gctacccacg
2221 ctgggagaag atccgtctcc aaaacagcca gtgctacaac tggactcttt tgctgggcaa
2281 tcggtggaaa acatttttcg agacggtcca catctaccta cgtagtcgga ctcggctacc
2341 taccctactg cgaaatgaga ctggccaggg ccccgtggac ctgtccgatc cctccaagag
2401 gcagttctac atcaagatct cggatgtgca ggtgttcggg tatagcctga ggttcaacgc
2461 cgacctcctg cgcagcgcag tgcagcaggt caaccagtcc tacacacagg gcggccagtt
2521 ctattcctct tcgtcagtga tgctcctctt gttggatatt cgggaccgaa ttaatcgcct
2581 ggcccctcct gtggccccgg ggaagcccca gctggacttg ttctcctgta tgctgaaaca
2641 ccgcctgaaa ctgaccaaca gcgagatcat cagggtgaac cacgccttgg acctgtacaa
2701 cacggagatc ctcaaacagt cggaccagat gacagccaaa ctctgctaac ccgggactcc
2761 ttgccatcga ctttccctgt tgttgtgcac acacaacaga aaaaatgaag caaaacaaaa
2821 caaaaaaacc cacaaaaatt tgtaaaatgt aattaatatt caaagaaaag gaggaaaatc
2881 ttcatttgtt ggaaatgaaa acgttgtagc aactgtataa aaccgttggg catgtttgtt
2941 atttctatac tctgtcatga agaagggtct cagccttttg tggagcattg agggagttgc
3001 ttcttaggcc tcaggtgctg tattgagggg ggagaaggga gaaagcatat gcaatgaatt
3061 gtaaagatct ctgctgtgca ggtgctaaga ttaaacacta aaaagaaaga tatatgtaat
3121 gtacaactga cactgccatt tttccttttt ggaggaaatg gacatagata aag
//