LOCUS JU320735 1555 bp mRNA linear TSA 04-NOV-2014
DEFINITION TSA: Macaca mulatta Mamu_523787 mRNA sequence.
ACCESSION JU320735
VERSION JU320735.1
DBLINK BioProject: PRJNA77627
Sequence Read Archive: SRR358985
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Macaca mulatta (Rhesus monkey)
ORGANISM Macaca mulatta
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
REFERENCE 1 (bases 1 to 1555)
AUTHORS Zimin,A.V., Cornish,A.S., Maudhoo,M.D., Gibbs,R.M., Zhang,X.,
Pandey,S., Meehan,D.T., Wipfler,K., Bosinger,S.E., Johnson,Z.P.,
Tharp,G.K., Marcais,G., Roberts,M., Ferguson,B., Fox,H.S.,
Treangen,T., Salzberg,S.L., Yorke,J.A. and Norgren,R.B. Jr.
TITLE A new rhesus macaque assembly and annotation for next-generation
sequencing analyses
JOURNAL Biol. Direct 9 (1), 20 (2014)
PUBMED 25319552
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1555)
AUTHORS Pandey,S., Maudhoo,M.D., Guda,C., Ferguson,B., Fox,H. and
Norgren,R.B.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2012) Genetics, Cell Biology and Anatomy,
University of Nebraska Medical Center, 985805 Nebraska Medical
Center, Omaha, NE 68198-5805, USA
COMMENT All reads were aligned with the human RefSeq mRNA sequences using
BLAST. For read lengths of 76 bp, if the alignment length was 70 or
less, the read was filtered from the input file. For read lengths
of 100 bp, if the alignment length was 90 or less, the read was
filtered from the input file. For paired end sequences, if one
sequence was filtered, its pair was also filtered. Velveth was
performed as recommended. kmer was set at 29 for single end
sequences and 31 for paired end sequences. The output files from
Velveth were passed to Velvetg. After performing Velvetg, this
output file was passed to Oases where the final assembly was
performed. Default parameters were used for Velvetg and Oases.
##Assembly-Data-START##
Assembly Method :: Velvet v.1.1.05; Oases v.0.1.22
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1555
/organism="Macaca mulatta"
/mol_type="mRNA"
/isolation_source="001T-NHP"
/db_xref="taxon:9544"
/tissue_type="caudate"
/geo_loc_name="China"
gene <1..>1555
/gene="PRRT1"
CDS 109..1029
/gene="PRRT1"
/codon_start=1
/product="proline-rich transmembrane protein 1"
/protein_id="AFE64491.1"
/translation="MSSEKSGLPDSVPHTSPPPYNAPQPPAEPPAPPPQAAPSSHHHH
HHHYHQSGTATLPRLGAGGLASSAATAQRGPSSSATLPRPPHHAPPGPAAGAPPPGCA
TLPRMPPDPYLQETRFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTLPL
GGYVAPGYPLQLQPCTAYVPVYPVGTPYAGGTPGGTGVTSTLPPPPQGPGLALLEPRR
PPHDYMPIAVLTTICCFWPTGIIAIFKAVQVRTALARGDMVSAEIASREARNFSFISL
AVGIAAMVLCTILTVVIIIAAQHHENYWDP"
ORIGIN
1 ctccatctct gcgctgctgc cggctgcgcc atccagcacc cagactccag caccggccag
61 ggacccccac tccggctgca gggaccctgt cccagcgaga ccgcaggcat gtcatccgaa
121 aagtcaggac tcccagactc agtccctcac acttctccac cgccctacaa tgcccctcag
181 cctccagccg aacccccagc cccaccgcca caggcagccc cttcctcgca ccatcaccac
241 caccaccact accatcagtc tggcaccgcc accctcccgc gcttaggggc agggggcctg
301 gcatcttccg cggccaccgc tcagcgcggt ccctcctcct ccgccacgct gccgagaccc
361 ccccaccacg cccctcccgg ccctgctgcc ggggcacccc cacccggctg cgctaccttg
421 ccccgcatgc cacccgaccc ttacctgcag gagactcgct tcgagggccc acttcccccg
481 ccgccgcccg ctgccgccgc cccgcccccg ccggcgccag cccagactgc ccaggcccct
541 ggcttcgtgg tgcccacgca cgcgggaact gtgggcacgc tgccgctggg gggctacgta
601 gcacccggat accccctgca gctgcagccc tgcactgctt acgtgccggt ctacccggtg
661 ggcacgccat atgcaggcgg gaccccaggg gggacaggcg tgacctccac tctccccccg
721 ccgccccagg gcccagggct ggccctgctg gagccgaggc gcccgccaca cgactacatg
781 cccatcgcgg tgctgaccac catctgttgc ttctggccta ctggcatcat tgccatcttc
841 aaggcagtgc aggtgcgcac ggccttggcc cgcggagaca tggtgtcggc cgagatcgct
901 tcacgcgagg cccggaactt ctccttcatc tccctggccg tgggcatcgc ggctatggtg
961 ctctgtacca tcctcaccgt agtcatcatc atcgccgcgc agcaccacga gaactactgg
1021 gatccctaaa aacgcccccg gtccggcccc actctgcgcc cctcgacctc ccaggctctt
1081 tctgcagtca taccgcggac ccaatgggcg ccctgcacac ctgcttctgg ggccgtcaga
1141 cttggataca tcgtaaactc cgcctccacg gaacgtctcg ccttgcgagc aagctccgaa
1201 tccagttcct caggaacccc tccaaaaccc acagtcccag ggacgccgct ttccgggatt
1261 ccggccaaac gccggaccct cagtcgctcc aggtcccctc accctcaaag tgtagcgccc
1321 ccagccgagc aacctcggtt ttgtccctaa aacccagcct cctctataag ctccgcccca
1381 actcagacaa aaccccgcct ccaggtcggc aggctccgcc ttcttttctt ctccgcgggg
1441 tgattcagtc cagtgattgg gtttgtggct ccaggcctcg ctcacagacg gacagactcc
1501 tccctttctt actgcaaaag gaccgagccc tggggtagta gcgcccccac actcc
//