LOCUS JBDRFP010000000 37 rc DNA linear ENV 24-OCT-2024
DEFINITION MAG: bacterium isolate MEGAHIT-group-1.379, whole genome shotgun
sequencing project.
ACCESSION JBDRFP000000000
VERSION JBDRFP000000000.1
DBLINK BioProject: PRJNA1023754
BioSample: SAMN39496991
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE bacterium (groundwater metagenome)
ORGANISM bacterium
Bacteria.
REFERENCE 1 (bases 1 to 37)
AUTHORS Dopson,M., Rezaei Somee,M., Gonzalez-Rosales,C., Lui,L.M.,
Turner,S., Buck,M., Nilsson,E., Westmeijer,G., Ashoor,K.,
Nielsen,T.N., Mehrshad,M. and Bertilsson,S.
TITLE Novel candidate taxa contribute to key metabolic processes in
Fennoscandian Shield deep groundwaters
JOURNAL ISME Commun 4 (1), ycae113 (2024)
PUBMED 39421601
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 37)
AUTHORS Turner,S., Bertilsson,S. and Dopson,M.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2024) Centre for Ecology and Evolution in
Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan
4, Kalmar 39231, Sweden
COMMENT The bacterium whole genome shotgun (WGS) project has the project
accession JBDRFP000000000. This version of the project (01) has
the accession number JBDRFP010000000, and consists of sequences
JBDRFP010000001-JBDRFP010000037.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: megahit v. 1.2.9
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 10x
Sequencing Technology :: Illumina NovaSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/23/2024 16:24:10
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.7
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 1,038
CDSs (total) :: 987
Genes (coding) :: 982
CDSs (with protein) :: 982
Genes (RNA) :: 51
rRNAs :: 1, 1, 2 (5S, 16S, 23S)
complete rRNAs :: 1, 1 (5S, 16S)
partial rRNAs :: 2 (23S)
tRNAs :: 45
ncRNAs :: 2
Pseudo Genes (total) :: 5
CDSs (without protein) :: 5
Pseudo Genes (ambiguous residues) :: 0 of 5
Pseudo Genes (frameshifted) :: 1 of 5
Pseudo Genes (incomplete) :: 4 of 5
Pseudo Genes (internal stop) :: 0 of 5
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..37
/organism="bacterium"
/mol_type="genomic DNA"
/isolate="MEGAHIT-group-1.379"
/isolation_source="groundwater from Aspo HRL borehole"
/db_xref="taxon:1869227"
/environmental_sample
/geo_loc_name="Sweden: Aspo HRL"
/lat_lon="57.264 N 16.3936 E"
/collection_date="2017-02/2017-05"
/metagenome_source="groundwater metagenome"
/note="metagenomic"
WGS JBDRFP010000001-JBDRFP010000037
//