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MAG: Pseudomonadota bacterium isolate MEGAHIT-group-0.273, whole genome shotgun sequencing project

GenBank: JAZDGQ000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JAZDGQ010000000          145 rc    DNA     linear   ENV 24-OCT-2024
DEFINITION  MAG: Pseudomonadota bacterium isolate MEGAHIT-group-0.273, whole
            genome shotgun sequencing project.
ACCESSION   JAZDGQ000000000
VERSION     JAZDGQ000000000.1
DBLINK      BioProject: PRJNA1023754
            BioSample: SAMN39496612
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Pseudomonadota bacterium (groundwater metagenome)
  ORGANISM  Pseudomonadota bacterium
            Bacteria; Pseudomonadati; Pseudomonadota.
REFERENCE   1  (bases 1 to 145)
  AUTHORS   Dopson,M., Rezaei Somee,M., Gonzalez-Rosales,C., Lui,L.M.,
            Turner,S., Buck,M., Nilsson,E., Westmeijer,G., Ashoor,K.,
            Nielsen,T.N., Mehrshad,M. and Bertilsson,S.
  TITLE     Novel candidate taxa contribute to key metabolic processes in
            Fennoscandian Shield deep groundwaters
  JOURNAL   ISME Commun 4 (1), ycae113 (2024)
   PUBMED   39421601
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 145)
  AUTHORS   Turner,S., Bertilsson,S. and Dopson,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2024) Centre for Ecology and Evolution in
            Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan
            4, Kalmar 39231, Sweden
COMMENT     The Pseudomonadota bacterium whole genome shotgun (WGS) project has
            the project accession JAZDGQ000000000.  This version of the project
            (01) has the accession number JAZDGQ010000000, and consists of
            sequences JAZDGQ010000001-JAZDGQ010000145.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/27/2024 05:03:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,129
            CDSs (total)                      :: 2,093
            Genes (coding)                    :: 2,054
            CDSs (with protein)               :: 2,054
            Genes (RNA)                       :: 36
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 5 of 39
            Pseudo Genes (incomplete)         :: 35 of 39
            Pseudo Genes (internal stop)      :: 0 of 39
            Pseudo Genes (multiple problems)  :: 1 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..145
                     /organism="Pseudomonadota bacterium"
                     /mol_type="genomic DNA"
                     /isolate="MEGAHIT-group-0.273"
                     /isolation_source="groundwater from Aspo HRL borehole"
                     /db_xref="taxon:1977087"
                     /environmental_sample
                     /geo_loc_name="Sweden: Aspo HRL"
                     /lat_lon="57.264 N 16.3936 E"
                     /collection_date="2019-10"
                     /metagenome_source="groundwater metagenome"
                     /note="metagenomic"
WGS         JAZDGQ010000001-JAZDGQ010000145
//
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