LOCUS JAZDGQ010000000 145 rc DNA linear ENV 24-OCT-2024
DEFINITION MAG: Pseudomonadota bacterium isolate MEGAHIT-group-0.273, whole
genome shotgun sequencing project.
ACCESSION JAZDGQ000000000
VERSION JAZDGQ000000000.1
DBLINK BioProject: PRJNA1023754
BioSample: SAMN39496612
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE Pseudomonadota bacterium (groundwater metagenome)
ORGANISM Pseudomonadota bacterium
Bacteria; Pseudomonadati; Pseudomonadota.
REFERENCE 1 (bases 1 to 145)
AUTHORS Dopson,M., Rezaei Somee,M., Gonzalez-Rosales,C., Lui,L.M.,
Turner,S., Buck,M., Nilsson,E., Westmeijer,G., Ashoor,K.,
Nielsen,T.N., Mehrshad,M. and Bertilsson,S.
TITLE Novel candidate taxa contribute to key metabolic processes in
Fennoscandian Shield deep groundwaters
JOURNAL ISME Commun 4 (1), ycae113 (2024)
PUBMED 39421601
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 145)
AUTHORS Turner,S., Bertilsson,S. and Dopson,M.
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2024) Centre for Ecology and Evolution in
Microbial Model Systems (EEMiS), Linnaeus University, Stuvaregatan
4, Kalmar 39231, Sweden
COMMENT The Pseudomonadota bacterium whole genome shotgun (WGS) project has
the project accession JAZDGQ000000000. This version of the project
(01) has the accession number JAZDGQ010000000, and consists of
sequences JAZDGQ010000001-JAZDGQ010000145.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: megahit v. 1.2.9
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 10x
Sequencing Technology :: Illumina NovaSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 01/27/2024 05:03:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 2,129
CDSs (total) :: 2,093
Genes (coding) :: 2,054
CDSs (with protein) :: 2,054
Genes (RNA) :: 36
tRNAs :: 33
ncRNAs :: 3
Pseudo Genes (total) :: 39
CDSs (without protein) :: 39
Pseudo Genes (ambiguous residues) :: 0 of 39
Pseudo Genes (frameshifted) :: 5 of 39
Pseudo Genes (incomplete) :: 35 of 39
Pseudo Genes (internal stop) :: 0 of 39
Pseudo Genes (multiple problems) :: 1 of 39
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..145
/organism="Pseudomonadota bacterium"
/mol_type="genomic DNA"
/isolate="MEGAHIT-group-0.273"
/isolation_source="groundwater from Aspo HRL borehole"
/db_xref="taxon:1977087"
/environmental_sample
/geo_loc_name="Sweden: Aspo HRL"
/lat_lon="57.264 N 16.3936 E"
/collection_date="2019-10"
/metagenome_source="groundwater metagenome"
/note="metagenomic"
WGS JAZDGQ010000001-JAZDGQ010000145
//