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Pseudomonas aeruginosa strain AUS490, whole genome shotgun sequencing project

GenBank: JAUHTE000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JAUHTE010000000          185 rc    DNA     linear   BCT 17-NOV-2023
DEFINITION  Pseudomonas aeruginosa strain AUS490, whole genome shotgun
            sequencing project.
ACCESSION   JAUHTE000000000
VERSION     JAUHTE000000000.1
DBLINK      BioProject: PRJNA325248
            BioSample: SAMN36289236
KEYWORDS    WGS.
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 185)
  AUTHORS   Erdmann,M.B., Gardner,P.P. and Lamont,I.L.
  TITLE     The PitA protein contributes to colistin susceptibility in
            Pseudomonas aeruginosa
  JOURNAL   PLoS One 18 (10), e0292818 (2023)
   PUBMED   37824582
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 185)
  AUTHORS   Kidd,T., Ramsay,K., Bell,S., Wainright,C., Grimwood,K.,
            Kukavica,I., Emond-Rherault,J.-G., Freschi,L., Jeukens,J. and
            Levesque,R.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2023) Institut de Biologie Integrative et des
            Systemes (IBIS), Universite Laval, 1030, avenue de la Medecine,
            Quebec City, QC G1V0A6, Canada
COMMENT     The Pseudomonas aeruginosa whole genome shotgun (WGS) project has
            the project accession JAUHTE000000000.  This version of the project
            (01) has the accession number JAUHTE010000000, and consists of
            sequences JAUHTE010000001-JAUHTE010000185.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: a5-miseq-linux v. 20150522
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/05/2023 16:05:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,076
            CDSs (total)                      :: 6,005
            Genes (coding)                    :: 5,784
            CDSs (with protein)               :: 5,784
            Genes (RNA)                       :: 71
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 221
            CDSs (without protein)            :: 221
            Pseudo Genes (ambiguous residues) :: 0 of 221
            Pseudo Genes (frameshifted)       :: 131 of 221
            Pseudo Genes (incomplete)         :: 81 of 221
            Pseudo Genes (internal stop)      :: 17 of 221
            Pseudo Genes (multiple problems)  :: 8 of 221
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..185
                     /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="AUS490"
                     /isolation_source="clinic"
                     /host="Homo sapiens"
                     /db_xref="taxon:287"
                     /geo_loc_name="Australia: Queensland"
                     /lat_lon="22.5752 S 144.0848 E"
                     /collection_date="2012"
                     /collected_by="Kay Ramsay, Tim Kidd, Scott Bell, Claire
                     Wainwright, Keith Grimwood"
WGS         JAUHTE010000001-JAUHTE010000185
//
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