LOCUS JAUHTE010000000 185 rc DNA linear BCT 17-NOV-2023
DEFINITION Pseudomonas aeruginosa strain AUS490, whole genome shotgun
sequencing project.
ACCESSION JAUHTE000000000
VERSION JAUHTE000000000.1
DBLINK BioProject: PRJNA325248
BioSample: SAMN36289236
KEYWORDS WGS.
SOURCE Pseudomonas aeruginosa
ORGANISM Pseudomonas aeruginosa
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 185)
AUTHORS Erdmann,M.B., Gardner,P.P. and Lamont,I.L.
TITLE The PitA protein contributes to colistin susceptibility in
Pseudomonas aeruginosa
JOURNAL PLoS One 18 (10), e0292818 (2023)
PUBMED 37824582
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 185)
AUTHORS Kidd,T., Ramsay,K., Bell,S., Wainright,C., Grimwood,K.,
Kukavica,I., Emond-Rherault,J.-G., Freschi,L., Jeukens,J. and
Levesque,R.C.
TITLE Direct Submission
JOURNAL Submitted (04-JUL-2023) Institut de Biologie Integrative et des
Systemes (IBIS), Universite Laval, 1030, avenue de la Medecine,
Quebec City, QC G1V0A6, Canada
COMMENT The Pseudomonas aeruginosa whole genome shotgun (WGS) project has
the project accession JAUHTE000000000. This version of the project
(01) has the accession number JAUHTE010000000, and consists of
sequences JAUHTE010000001-JAUHTE010000185.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 2015
Assembly Method :: a5-miseq-linux v. 20150522
Genome Representation :: Full
Expected Final Version :: No
Genome Coverage :: 20x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/05/2023 16:05:40
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.5
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 6,076
CDSs (total) :: 6,005
Genes (coding) :: 5,784
CDSs (with protein) :: 5,784
Genes (RNA) :: 71
rRNAs :: 4, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 4, 1, 1 (5S, 16S, 23S)
tRNAs :: 61
ncRNAs :: 4
Pseudo Genes (total) :: 221
CDSs (without protein) :: 221
Pseudo Genes (ambiguous residues) :: 0 of 221
Pseudo Genes (frameshifted) :: 131 of 221
Pseudo Genes (incomplete) :: 81 of 221
Pseudo Genes (internal stop) :: 17 of 221
Pseudo Genes (multiple problems) :: 8 of 221
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..185
/organism="Pseudomonas aeruginosa"
/mol_type="genomic DNA"
/strain="AUS490"
/isolation_source="clinic"
/host="Homo sapiens"
/db_xref="taxon:287"
/geo_loc_name="Australia: Queensland"
/lat_lon="22.5752 S 144.0848 E"
/collection_date="2012"
/collected_by="Kay Ramsay, Tim Kidd, Scott Bell, Claire
Wainwright, Keith Grimwood"
WGS JAUHTE010000001-JAUHTE010000185
//