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GenBank: GDIQ01266054.1
FASTA Graphics
LOCUS GDIQ01266054 6980 bp RNA linear TSA 23-OCT-2015 DEFINITION TSA: Daphnia magna Dapma6tiEVm000253t2 transcribed RNA sequence. ACCESSION GDIQ01266054 VERSION GDIQ01266054.1 DBLINK BioProject: PRJNA284518 BioSample: SAMN03765626, SAMN03765628, SAMN03765630, SAMN03765632, SAMN03765634, SAMN03765636, SAMN03765638, SAMN03765640 Sequence Read Archive: SRR2062534, SRR2062535, SRR2062536, SRR2062964, SRR2062965, SRR2062966, SRR2063033, SRR2063035, SRR2063036, SRR2063278, SRR2063279, SRR2063280, SRR2063822, SRR2063823, SRR2063824, SRR2063832, SRR2063834, SRR2063836, SRR2063845, SRR2063846, SRR2063847, SRR2063852, SRR2063853, SRR2063854 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Daphnia magna ORGANISM Daphnia magna Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia. REFERENCE 1 (bases 1 to 6980) AUTHORS Gilbert,D.G. TITLE EvidentialGene: Evidence-directed Construction of Complete mRNA Transcriptomes without Genomes JOURNAL Unpublished REFERENCE 2 (bases 1 to 6980) AUTHORS Gilbert,D.G. TITLE Direct Submission JOURNAL Submitted (20-OCT-2015) Indiana University, IN, USA COMMENT Paired end RNA-Seq reads from public SRA entries of this species are assembled de-novo with several RNA assemblers, using multiple options for kmer fragmenting, insert sizes, read coverage, quality and abundance filtering. EvidentialGene tr2aacds pipeline software is used to process the several million resulting assemblies by coding sequences, translate to proteins, score gene evidence including CDS/UTR quality, homology, and classify/reduce into a biologically informative transcriptome of primary and alternate transcripts. ##Assembly-Data-START## Assembly Method :: EvidentialGene v2013.03.02; Velvet/Oases v1.2.03/o0.2.06 (2012.02); SOAPdenovo-Trans v2011.12.22; Trinity v2012.03.17 Assembly Name :: evigeneR13 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6980 /organism="Daphnia magna" /mol_type="transcribed RNA" /submitter_seqid="Dapma6tiEVm000253t2" /db_xref="taxon:35525" CDS 192..6317 /note="locus_tag:Dapma6tiEVm_000253, isoform 2; original_id:Dapma6tiEVm000253t2; product alignment:blastp is 84; db_xref_other:daphmagmrna:Dapma7bEVm000268t1; db_xref_other:daphplx:hxAUG26us19g141t1; db_xref_other:family:ARP7f_G844" /codon_start=1 /product="Ankyrin repeat and BTB/POZ domain-containing protein BTBD11-A" /protein_id="JAJ85670.1" /db_xref="FLYBASE:FBgn0053291" /db_xref="GeneID:XP_008192899" /db_xref="UniProtKB/TrEMBL:E9GF23_DAPPU" /translation="MLRKSASQRTVRDTRQTNQKLSRQIENVFSYRLQDAFQRGLGYD SATPTEWPGELNRLSADGSILLKNGGGGGYGGANGFLHHQSSPAFQNHLQQQQQHNVA SAGGVGQHPSQVHQSQAQQTAAALMMNGKSPSRDLGGGSTPVLKMTSAHNNTANTQAF RNNSARLDCGAGSSSHTNMSGGGGAMIGAAGVPSIMSASAAVRSVSRERLVQSQVVCL ATSSNSNNNSNTSNSSRDLMARDARDAWDYYGAPPSGQQAGNSSMASAGLSGSSPSMV GSSPKIFNGLANNGASGSSAYATRPAVAPGGPASIINNVRQTQQSPAAGCNGGLVQHQ QSFQQPQQRANVAAINGMAASAAIVGGLRDPRDRFSLLSSSATSPSSSSSSPKLENGN VATNNGNSLIHAPSPQRLYSPVGQCHPQQPHRNQTQQQPQQQQQQQTIGQQHQQQLLQ AQSHHQQQQQQHASQSLQQGSVINSQPQQHQQQQQQQQPQQQQQMIHHLQYPYYNSKL ESLTHRMPNLSFEGLGQQQPTAATGSAVVSSRVTEQPPLSPAVVAASPSFSSTTSSSS SSSSSSSSSSSCCIPSTPAGSGGSPSTTTATAAAAAAAAAASSQPSASCSNGGNGGGS TGPSPDTSSKHEPSLLFLSAGHAESTAASDQSVNARATGAPPATATSPLLLPPAGQVC SNAGQQSSSSAEVNGGGNSETGASSPCCSSDHKDNIVDVSNKLQQQFDALCMDEAFAT AAIVTASVRTSSPSVVTKTTSLSGRHNNKDLLSAEASGYLFRLADPSMMLVRPDSSAA SATASASTSGADQEETIGGGGGGGSNSSTSSRTGGLMASGVSNVSDMLGAGMSPESIT DCGSLSKSSSDGDPVGVVSRKRPPTKLKSRRRNILSFPHHISVDELRLLQRRKESMYG GSSSDENRSSGHASMSDGHTSSSPPAETLPRHTHYRTCLNAVPEDDKMSANCVTPQQS HPPKTNNNRRVVAGKAVSRHRGLAGVKDDLSSQLEHATGLEDIKMAIEQLTLRSHGSR TSYSTSTYSSLSGSEGGAEPMRRLIRHSSLETINTNVTVADEFVWVDSYNRLVELQQL PWSNHDVLRVIQNGRIKEHLERVSMETVPRLSYLLQRALVRIARETQRLARPLAMCSK QEVCSALRIVLSPALADSCIKACLRAAAMFTVSGDMVRQSKSARAALQLSVGRFHRWM CDVRLGKFIHDYAAVYLAAGLENLLEEIMMQCMPSDQETLLTASVLENAIANNGDLWG LLQPYAHLNAGRTATGALSLPRWPSQSGLDSGLRGSGSSVSSNGDDHSRSAKTLEQSL LTTCVGTINELHELLQRVTQFHFRHSAPCPGATPNGGSKQALTWASSALHALFYFMRC SQLEHAEHAQRAPIQELVYERPYIVLPPLIEWVRVASAHAEHRHSSVLDKDDVAQAAR LLLPGVDCPIRAYGFEEILCPRRHMDDLECSRKLKIDLAFKMLSSARSDLIPHALQLL PSTKINTVSENGLTPLMLAAIRGDETLAKVLLDAGADVDAETPTIAGAQTHPGAYPNP ETQHWTALTYTAIQGQLNIAKLLLERGANVEGGARLSEDKCTETPLQVAVGSGNLEMI SMLLAHGARPFLSTLVRDTLCYSSSAQKGCYSAMAVAAAHGQRAVLHKLLSHPVNGNS NAEVLSLEEILAEGASHLTSDRRPTRSQGSGSSSSSDSSRSASNSANGGDNKLQVVKL NKGQIKALQEAMYHSAENAHLDITLDLRNLGVPWTLHCWMHTLATAHEHSLENVIDQL LQDFLQVWGPDDYSTQFVDECLPIIFNIFRYSKNEGTTLLLADIFATCYGRENIKEIR DTSLCGGPRIDPKFVNNPELSDVQFRVEGRVFYAHKLILITASPRFKSMLNSKFCEGN PPIIQINDIRYDIFQMVMHYLYKGGCENLDVNQNDVLELMAAANFFQLDGLLRFCEAR CSTLVDLDNIVSMYIHAKVYNAVQLLEYCQGFLLQNMVALLTYDDSVRRLIFGKKLHN HDVLAGLLLTLQARIKSRSQHKLNK" ORIGIN 1 cgtggaatcg aagtttctcg tgtagtgttg aatttctcgt gtcataatcg tcggctttga 61 atcgcgacgt gaaatcccgg aaaacggacg gtttactcta acgtggcatt ctgaaattgt 121 ggctcgtttc tctttggccg gttcggggac ggaggggatc gatcgatcga ggtggccagt 181 gtttttccat catgctgaga aagagcgcta gccagcgaac ggtgcgcgat acgagacaga 241 ccaatcaaaa gttgagccgt cagattgaaa acgtgttcag ttatcgattg caagatgcat 301 tccagcgggg attgggatac gactctgcca cgccaactga atggcctggc gaattgaaca 361 gactcagcgc cgatggatca atccttttga agaatggcgg cggaggaggg tacggcggag 421 cgaatggatt ccttcaccac cagtcgtctc cagccttcca gaatcatctc cagcagcagc 481 agcagcataa tgtggcgtca gctggcggag taggtcaaca tccgtcacag gttcaccagt 541 cacaggcgca gcaaacggcg gctgcgttga tgatgaacgg caaatcgccg tcacgcgacc 601 tgggcggcgg atcaactccc gtcttgaaaa tgacgtccgc ccacaacaac acagcaaaca 661 ctcaggcttt ccggaataat tccgccagac tcgattgcgg cgctggctca tcgagccaca 721 ccaacatgag cggtggtggc ggcgctatga tcggcgcagc gggagttcca tccatcatga 781 gcgcgtcggc ggccgttcgt tccgtgtctc gtgaacggct tgttcaaagc caagtcgtct 841 gcctggccac atcgagcaac agcaacaaca acagcaacac gagtaacagt agtcgcgatt 901 tgatggcccg tgacgcccgt gatgcatggg attactacgg tgcgcctccc tctggccagc 961 aggcgggcaa tagcagcatg gcgagcgcag gtctttcagg ctcgtctccg tcgatggttg 1021 gatcgtcacc gaagatattc aacgggctgg ccaacaatgg ggcgagtggg tcttctgctt 1081 acgcaacacg tccggcggta gcaccgggcg ggccggcctc tatcatcaat aacgttcgac 1141 aaacgcaaca atcgccggca gccggctgca atggcggtct cgttcagcat cagcaatcgt 1201 ttcagcaacc gcaacagcgg gccaatgtgg ccgcaataaa tggcatggct gcgtcggcag 1261 ctatagttgg agggctacgt gacccacgtg accgcttctc tttgctctcg tcgtcggcca 1321 cctccccttc ttcgtcgtcg tcgtctccca aattggagaa tggaaatgta gccaccaata 1381 atggcaattc tcttattcac gcaccttcac cacagagact gtacagtccg gttggccagt 1441 gccatccaca gcagccacat cgaaatcaaa ctcagcaaca acctcagcag cagcagcagc 1501 agcaaacgat tgggcaacaa catcaacagc aattgctgca ggctcagtct caccaccagc 1561 aacaacaaca acaacacgca tcgcaatcgt tgcagcaagg ttctgtaatt aactcgcagc 1621 cccagcagca tcagcagcag caacaacaac agcagcctca acaacagcaa cagatgatcc 1681 atcatttgca gtatccttat tacaattcca agttggaaag tctgacccat cggatgccca 1741 atctgagctt cgaaggtctg ggtcaacaac agccaacggc agcgacggga tccgccgtgg 1801 tcagcagtcg ggtgactgaa cagcctcctc tttcacccgc tgttgttgct gcttctcctt 1861 cattttcatc caccacctcc tcttcctcct cttcttcttc ctcgtcctcc tcctcctcct 1921 cctgttgtat cccatcaacc ccggcgggct ctggtggctc tccatcaaca acaacagcca 1981 cagcagcagc agcagcagca gcagcagcag caagttcaca gccatcggct tcttgtagca 2041 atggcggcaa tggtggtggc agtactgggc catcgccaga cacgagcagc aaacacgagc 2101 cttcgctcct cttcctatcc gcggggcatg ccgaatcgac ggcggccagc gatcaatccg 2161 tcaacgccag agcaacgggc gcaccaccag caacagcaac cagtccgctc ctattgccgc 2221 cagcaggcca ggtgtgtagc aacgcaggcc aacagtccag ttcgtcggca gaggtcaacg 2281 gtggcggtaa ttcggaaacg ggcgcatcgt ccccctgctg ctcctcggat cacaaggata 2341 acatcgtcga tgtcagcaac aagttgcagc agcagtttga cgccttgtgc atggacgaag 2401 cctttgcgac ggcagccatt gttacggcgt cagtgaggac gagcagtccg tcggttgtga 2461 ccaaaacgac gtcgctttct ggccgccaca acaacaagga tttacttagt gccgaagcca 2521 gtggttacct gtttcggctg gccgatccgt ccatgatgct ggtgcgtcca gactcgtcgg 2581 ccgcttcggc cacggccagc gcgtcgacaa gtggagccga tcaagaagag actatcggcg 2641 gaggaggagg aggaggatcc aattcgtcca cgtcgtcacg aacaggggga ctgatggcct 2701 ctggcgtttc gaatgtgtcg gacatgctgg gcgccggcat gtcgcccgaa tcgatcaccg 2761 attgcggatc gctgtccaaa agctcttcgg atggcgatcc agttggagtg gtcagccgga 2821 aacgacctcc aactaaattg aaatcgcgtc gtcgcaacat tctcagtttc ccgcaccaca 2881 ttagcgtcga cgagctgcgt cttctccagc gtcgcaagga gtcgatgtac ggcggttcat 2941 cgtcggacga gaaccgatct tcgggtcacg ctagcatgtc ggatggacac acgagttcgt 3001 caccgcccgc tgagaccctg cccaggcaca cgcattaccg cacctgcctt aacgccgtac 3061 ctgaagatga caagatgtcg gccaactgtg tcacgccgca gcagagtcat ccgccaaaga 3121 cgaacaataa ccggagggtg gtggccggta aggctgtgtc gcgacatcgt ggtctcgccg 3181 gagtcaagga cgatctgtca tcgcagctgg aacacgccac cggattggag gacatcaaaa 3241 tggccattga acagttgaca ttgcgttcgc acggttcacg cacctcgtac tctacgtcaa 3301 cgtattccag tttgagcggc agcgaaggcg gagcggagcc catgcgtcgg ctcatccgtc 3361 attcgtcgct cgaaacgatc aacactaacg tgacggtggc cgacgagttc gtctgggtcg 3421 attcttataa tcgcctggta gaactgcaac agctgccctg gtccaatcac gatgtccttc 3481 gcgtcatcca gaatggacgc attaaagagc acttggaacg tgtttccatg gagactgtac 3541 cacgactttc ctacttgctc cagcgggcgt tggtacgaat cgcccgtgag actcaacgac 3601 tcgcccgtcc gctggccatg tgctccaaac aggaagtctg ttccgcgctg cgcatcgtcc 3661 tttcaccagc cttggccgat agttgcatca aggcgtgttt gcgagcggcc gccatgttta 3721 ctgtttcggg cgatatggtg cgtcaaagca aatcagccag ggctgcgcta cagctgtctg 3781 ttggccgatt ccatcgctgg atgtgtgacg tccgtttggg gaaattcatt cacgattatg 3841 ctgctgttta tttggccgct ggcttggaaa atttgctgga agagatcatg atgcagtgca 3901 tgccatcgga tcaagagacc ctgctgacgg cctccgtttt ggaaaacgcc atcgctaaca 3961 acggcgatct gtggggcctg ttacaaccct acgctcatct aaacgccggc aggactgcta 4021 ctggagcatt atcgcttcca cgatggccgt cccaatccgg gttggatagc ggactgcgtg 4081 gctctggatc ttccgtttct tcgaacggcg atgaccacag ccgttcggct aaaacattgg 4141 aacaaagttt actgactacc tgcgtcggga ctatcaacga gttgcacgaa ctactgcaac 4201 gggttacaca gtttcacttc cgtcatagcg ctccgtgccc gggagccaca cccaacggag 4261 gatccaaaca ggctctcacc tgggcatcgt ccgctcttca cgctctcttt tatttcatgc 4321 gatgttcaca gttggaacac gcagaacacg cacagagagc tcctatccag gaactggtct 4381 acgagcggcc ttacatcgtg ctgccaccgc tgattgaatg ggtccgggtt gccagtgctc 4441 acgcagaaca tcgccactct tccgtcctgg acaaagacga tgttgcgcaa gccgccagac 4501 ttcttctgcc gggagtcgat tgtcccatca gagcctacgg tttcgaagaa attctctgtc 4561 ctcgacgtca catggatgac ctggagtgct cgcgcaaact gaaaattgat ttggcattca 4621 agatgctaag ttcggctcgc agtgacctga ttccgcacgc tttgcagtta ctgccttcca 4681 caaagattaa cacggtcagc gaaaatggat tgacaccttt gatgttggct gccattcgtg 4741 gagatgaaac tttagccaaa gtcttgttag acgcgggtgc tgacgttgac gccgaaacgc 4801 caacaattgc cggcgcccag acgcacccag gtgcctaccc taaccccgag acccaacact 4861 ggacagcgtt aacttatacg gccatccaag ggcaactaaa tatcgccaaa ctgctgctgg 4921 aacgaggtgc caatgtcgaa ggtggcgccc gactcagcga agacaagtgc accgaaaccc 4981 cattacaggt ggccgttgga tcaggaaatt tagaaatgat atcaatgctg ctcgcgcatg 5041 gagcgcggcc attcctctcg acgttagtaa gagacacttt gtgctactct agctctgccc 5101 aaaaaggatg ttacagcgct atggccgtag cggccgctca tggtcaacga gccgtactgc 5161 acaagctgct ctcgcatccg gtcaacggta acagcaacgc cgaagtatta tcgttggagg 5221 agatcttggc tgaaggagct tcccatttaa cctcggatcg cagaccgacc cgttcgcagg 5281 gttcggggtc cagtagttca agcgactctt ccaggtcggc cagcaacagc gccaacggcg 5341 gtgacaataa gttgcaggtt gtcaagctga acaaaggaca gatcaaagcc ttacaggaag 5401 ccatgtatca cagtgccgaa aatgctcatc tagacataac gttagatttg cgcaacttgg 5461 gcgttccgtg gacattgcat tgctggatgc atacgctagc caccgctcat gaacattcac 5521 tagagaatgt catcgaccag ctgctccaag attttctgca agtctgggga ccggatgact 5581 attcgaccca gtttgtcgat gaatgtctgc ccatcatctt taacatcttc cgttacagca 5641 agaacgaagg aacgactcta ctgctggctg acatctttgc cacctgttac ggaagagaga 5701 acatcaaaga aatccgtgat acgtcactct gcggaggtcc tcgaatcgac cctaagtttg 5761 tcaacaatcc agaactaagt gacgtccagt ttcgcgttga gggccgcgtc ttttacgctc 5821 acaagctcat cttgatcaca gcctcgcctc gattcaaaag catgttgaac tcgaaattct 5881 gcgagggcaa cccaccgatt attcaaatca acgatattcg ctatgacatt ttccagatgg 5941 tgatgcatta cctgtacaaa ggcggatgtg agaatttgga cgtcaatcag aatgatgtac 6001 tggaattgat ggccgcagcc aactttttcc agcttgacgg gctactccgc ttctgcgaag 6061 ccaggtgttc cacactggtt gatttggaca atatcgtctc gatgtacatt cacgcaaagg 6121 tttacaatgc cgtccagttg ttggaatatt gccaaggttt cttgctacaa aacatggtgg 6181 ctctattgac ttacgatgat tcagtccgac gtctcatctt tggcaagaaa ctacacaatc 6241 acgacgttct agccggtttg ctgctgacgt tacaggctcg catcaaaagc cgctcccagc 6301 acaagttgaa caaatgaaag gaaggtgtcg tgtcttgaca aatttttttc tttagtttca 6361 ctgtgcattt tttaaataac tctacatcat tatccataat ctttgtcact tatctttgtc 6421 atgtttgaca cattgagtaa aatcagacaa gtcggttaaa taagtatttt tgctcagcgc 6481 agcggattga ggtttatcct ttgaatgtat agtggcaatg ccccttatcc tcctcattat 6541 gttttaataa gggatgtgga ctctatacat gaaatgtacc caattcgtcc ctcccccact 6601 ccctccatac gccttaactt cagtttttat gtataatgtc tttaattatt gtattgacta 6661 acatttcact tgaagctcag gttatgcaaa aacccgagtt tttcgttgtt aactcacgcc 6721 atgataaatg agcttcgtcg aaactagtat tgcgagttgg ttgcgtggag aaaaacgacc 6781 taaggactag ttcgagtccc atgcctgctg tcgtgttaac aaaaggctta acattcctcg 6841 acgaagctct cattccctct tcttttcaat tacataaaaa tcctctgtca ctacatatga 6901 attgcttgca ggaggcgaca gaattatatt cagcataaag ctccagattt attccatgtg 6961 tttgtaaagc aaattaacac //
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