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Akkermansia sp. CAG:344 genomic scaffold, scf7, whole genome shotgun sequence

GenBank: FR897051.1

FASTA Graphics 

LOCUS       FR897051                6695 bp    DNA     linear   CON 31-MAY-2013
DEFINITION  Akkermansia sp. CAG:344 genomic scaffold, scf7, whole genome
            shotgun sequence.
ACCESSION   FR897051
VERSION     FR897051.1
DBLINK      BioProject: PRJEB840
KEYWORDS    WGS; ENV.
SOURCE      Akkermansia sp. CAG:344
  ORGANISM  Akkermansia sp. CAG:344
            Bacteria; Pseudomonadati; Verrucomicrobiota; Verrucomicrobiia;
            Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental
            samples.
REFERENCE   1
  AUTHORS   Nielsen,H.B., Almeida,M., Juncker,A.S., Rasmussen,S., Li,J.,
            Sunagawa,S., Plichta,D., Gautier,L., Le Chatelier,E., Peletier,E.,
            Bonde,I., Nielsen,T., Manichanh,C., Arumugam,M., Batto,J.,
            Santos,M.B.Q.D., Blom,N., Borruel,N., Burgdorf,K.S., Boumezbeur,F.,
            Casellas,F., Dore,J., Guarner,F., Hansen,T., Hildebrand,F.,
            Kaas,R.S., Kennedy,S., Kristiansen,K., Kultima,J.R., Leonard,P.,
            Levenez,F., Lund,O., Moumen,B., Le Paslier,D., Pons,N.,
            Pedersen,O., Prifti,E., Qin,J., Raes,J., Tap,J., Tims,S.,
            Ussery,D.W., Yamada,T., MetaHit,consortium., Renault,P.,
            Sicheritz-Ponten,T., Bork,P., Wang,J., Brunak,S. and Ehrlich,S.D.
  TITLE     Dependencies among metagenomic species, viruses, plasmids and units
            of genetic variation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6695)
  AUTHORS   Rasmussen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2013) Department of Systems Biology, Technical
            University of Denmark, Kemitorvet 208, 2800, DENMARK
FEATURES             Location/Qualifiers
     source          1..6695
                     /organism="Akkermansia sp. CAG:344"
                     /mol_type="genomic DNA"
                     /isolation_source="derived from human gut metagenome"
                     /db_xref="taxon:1262691"
                     /environmental_sample
                     /note="scf7"
     gene            181..1737
                     /locus_tag="BN616_00017"
     CDS             181..1737
                     /locus_tag="BN616_00017"
                     /note="product inferred by homology to UniProt"
                     /codon_start=1
                     /transl_table=11
                     /product="putative uncharacterized protein"
                     /protein_id="CDD96546.1"
                     /translation="MTYLLSFLFLCLVSVCSAKELKIFLLTGQSNSLGAVKGSPASPE
                     LLKKYEPKKTLYWHENFGQREGVFPGASTSWEQVRPAMPRYNGNLCMGPEYGFAFTLE
                     KNGWFRDADVAIVKASRDGGGNSHWQKNGQAYKALVQAVKNACATVGKSKYSKVEFAG
                     LLYLQGESNIGASVPESASRFLELLGNLAADLKPYGDTSALAVQRAVIGENANWAGKN
                     ESDPETGNVTGGLKGNDTEVQGKTTHQVMKELAASRPSLGYAPTRDLPKLTAGDQMGV
                     HYNGQSQISIGARFAYEAARLAGKDTGSVRSGRYEAPLGSPDAWMNRKMPGKNVGVWN
                     LASSVKPSIVSGVVKLFGIRVEDPAVNTVIIQSKGGGSGDRLALGPGGIRLAEGKNLQ
                     LETNVQLAGRQAWNIPGGSTVELKPSPVQDKAHPVRLSGQAEVQVVRAEGGGGAEGMA
                     RVVLKRVLPASLKCSWILSGKVEMSLEGMEGQALNLGRVLVKDGAVLNLNGARLAAGS
                     IVNQGGTVNP"
     gene            2031..2522
                     /locus_tag="BN616_00018"
     CDS             2031..2522
                     /locus_tag="BN616_00018"
                     /note="product inferred by homology to UniProt"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor NrdR"
                     /protein_id="CDD96548.1"
                     /translation="MRCVQCGHLEDKVIDSRMSKDGTTIRRRRVCLRCDYRYTTYEQI
                     ERTELRVVKRDNLREALNREKILRGLVKACEKRPVSMDRLDRAVEEIISELHRDHLRE
                     VPSSEIGKKVIEKLYAIDPVAYIRYVSVYRQFSNVEEFIQEITQMRHQTLIDPLQRKL
                     PIL"
     gene            2545..3072
                     /locus_tag="BN616_00019"
     CDS             2545..3072
                     /locus_tag="BN616_00019"
                     /note="product inferred by homology to UniProt"
                     /codon_start=1
                     /transl_table=11
                     /product="putative uncharacterized protein"
                     /protein_id="CDD96550.1"
                     /translation="MIGFRNNRPLLKLGDCLITEYGEQWLADALEHAARRAGTTLPFK
                     DDLLASVRYYLEHECDLSVMQVSELYERLRRMLTEVGLAHLARELKEETPPMTVSVAE
                     IARSVPFWLFFACELKKQVEELQVHGITKYCFTGRKECVMALQGRKRWDRSCQTLLED
                     LDFLLSRYEEQEADR"
     gene            complement(3082..3966)
                     /locus_tag="BN616_00020"
     CDS             complement(3082..3966)
                     /locus_tag="BN616_00020"
                     /note="product inferred by homology to UniProt"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="CDD96552.1"
                     /translation="MLAGIPIHTAMKLTIDQDKCIHCHLCEKACFLTRFCGFDSLEGA
                     AEQYCIGCGHCVAVCPRQAITHSGVKSTEPIGPVPGEAEVLNLLMKTRSVRHFKPDPV
                     SRETWNVLRRAAEYSQSGLNAQSIRLTAVEDPDTLSGIRKALLRMYDKLERLAAFPVT
                     RLAARLALSPQDYHAVISETATQPLRRQAEERGEDPVLYGAPALLLLTGPASQTARED
                     ATVLSHNIMMALTALGLGSCYMGGLVLGCRVFKYKPLLRALDLPKGHAVHQALVLGTP
                     TVQLKRMPERKRRKIRFR"
     gene            4036..4368
                     /locus_tag="BN616_00021"
     CDS             4036..4368
                     /locus_tag="BN616_00021"
                     /note="product inferred by homology to UniProt"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific recombinase phage integrase
                     family"
                     /protein_id="CDD96554.1"
                     /translation="MKKPSSSYRCPCGVTLSLIGGKYKIVILWHLYQKAPVRFNELHR
                     LIPEATTKMFTQQLRELEADGLVERKAYPVIPPRVEYSLTAFGRSVLPVLEAMNEWGA
                     AYLAARGE"
     gene            complement(4375..6054)
                     /locus_tag="BN616_00022"
     CDS             complement(4375..6054)
                     /locus_tag="BN616_00022"
                     /note="product inferred by homology to UniProt"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter"
                     /protein_id="CDD96555.1"
                     /translation="MFRPALLSSLKTYTKQTFLADLFAGLTVGVVAIPLAMAFAIACG
                     LSPTQGLVTAIVAGFLISLFSGSKYQIGGPTGAFVIIIMGVLEQYHASGLLVCTLMAG
                     LFLIILGFCRMGALIRFIPFPVTTGFTSGIAVVIFSTQIKDIFGLTITEKIPGDFIEK
                     WACYFNYFHTINWAALALAVGTVAITLLSRRFWPRVPAMLVGMLGMTAVSVAFSLPVT
                     TIGQAFGSLPNTLPLPSLPHIEWHNLGALTAPAFTIALLAAIESLLSASVADGMTGGR
                     HKPNMELIAQGIGNIGSALFGGIPATGAIARTATNIKAGAKSPVSGMIHAVTLLAILM
                     AFAQYAQQIPLAVLAGILTVVCYNMSEMHTFSRLLKGPRQDAAVLVITFLLTVFVDLV
                     VAVEVGVVLAALLFMGRMAQISDVSAIKNELLDNDEEDDEDRSTAKLSIPEGVEVFDV
                     KGPFFFGAVEQFKDQVLETLEHDTKVVILRMRLVPALDATGLNVLSDFCHQCREHGST
                     LLVCGVQPQPLDVIRHAPFYRELKRYNICENIDAALNRARKIINGPAPKHL"
     gene            complement(6190..6648)
                     /locus_tag="BN616_00023"
     CDS             complement(6190..6648)
                     /locus_tag="BN616_00023"
                     /note="product inferred by homology to UniProt"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="CDD96559.1"
                     /translation="MVAVKGLPLTYNRDLQEDKEPLFDSIDTIKLALDVNAEMMAAMT
                     VNTARALEAASDPMLLATDLADYLVRRGVPFRKAHELVGKAVAMSISTGTPLNQLSDE
                     QFASISDAYGTAARDVFELTKAFAQRTNPGAPNSENTRRRIAYWEDILSK"
CONTIG      join(CBIA010000126.1:1..6695)
//
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