LOCUS FR897051 6695 bp DNA linear CON 31-MAY-2013
DEFINITION Akkermansia sp. CAG:344 genomic scaffold, scf7, whole genome
shotgun sequence.
ACCESSION FR897051
VERSION FR897051.1
DBLINK BioProject: PRJEB840
KEYWORDS WGS; ENV.
SOURCE Akkermansia sp. CAG:344
ORGANISM Akkermansia sp. CAG:344
Bacteria; Pseudomonadati; Verrucomicrobiota; Verrucomicrobiia;
Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental
samples.
REFERENCE 1
AUTHORS Nielsen,H.B., Almeida,M., Juncker,A.S., Rasmussen,S., Li,J.,
Sunagawa,S., Plichta,D., Gautier,L., Le Chatelier,E., Peletier,E.,
Bonde,I., Nielsen,T., Manichanh,C., Arumugam,M., Batto,J.,
Santos,M.B.Q.D., Blom,N., Borruel,N., Burgdorf,K.S., Boumezbeur,F.,
Casellas,F., Dore,J., Guarner,F., Hansen,T., Hildebrand,F.,
Kaas,R.S., Kennedy,S., Kristiansen,K., Kultima,J.R., Leonard,P.,
Levenez,F., Lund,O., Moumen,B., Le Paslier,D., Pons,N.,
Pedersen,O., Prifti,E., Qin,J., Raes,J., Tap,J., Tims,S.,
Ussery,D.W., Yamada,T., MetaHit,consortium., Renault,P.,
Sicheritz-Ponten,T., Bork,P., Wang,J., Brunak,S. and Ehrlich,S.D.
TITLE Dependencies among metagenomic species, viruses, plasmids and units
of genetic variation
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6695)
AUTHORS Rasmussen,S.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2013) Department of Systems Biology, Technical
University of Denmark, Kemitorvet 208, 2800, DENMARK
FEATURES Location/Qualifiers
source 1..6695
/organism="Akkermansia sp. CAG:344"
/mol_type="genomic DNA"
/isolation_source="derived from human gut metagenome"
/db_xref="taxon:1262691"
/environmental_sample
/note="scf7"
gene 181..1737
/locus_tag="BN616_00017"
CDS 181..1737
/locus_tag="BN616_00017"
/note="product inferred by homology to UniProt"
/codon_start=1
/transl_table=11
/product="putative uncharacterized protein"
/protein_id="CDD96546.1"
/translation="MTYLLSFLFLCLVSVCSAKELKIFLLTGQSNSLGAVKGSPASPE
LLKKYEPKKTLYWHENFGQREGVFPGASTSWEQVRPAMPRYNGNLCMGPEYGFAFTLE
KNGWFRDADVAIVKASRDGGGNSHWQKNGQAYKALVQAVKNACATVGKSKYSKVEFAG
LLYLQGESNIGASVPESASRFLELLGNLAADLKPYGDTSALAVQRAVIGENANWAGKN
ESDPETGNVTGGLKGNDTEVQGKTTHQVMKELAASRPSLGYAPTRDLPKLTAGDQMGV
HYNGQSQISIGARFAYEAARLAGKDTGSVRSGRYEAPLGSPDAWMNRKMPGKNVGVWN
LASSVKPSIVSGVVKLFGIRVEDPAVNTVIIQSKGGGSGDRLALGPGGIRLAEGKNLQ
LETNVQLAGRQAWNIPGGSTVELKPSPVQDKAHPVRLSGQAEVQVVRAEGGGGAEGMA
RVVLKRVLPASLKCSWILSGKVEMSLEGMEGQALNLGRVLVKDGAVLNLNGARLAAGS
IVNQGGTVNP"
gene 2031..2522
/locus_tag="BN616_00018"
CDS 2031..2522
/locus_tag="BN616_00018"
/note="product inferred by homology to UniProt"
/codon_start=1
/transl_table=11
/product="transcriptional repressor NrdR"
/protein_id="CDD96548.1"
/translation="MRCVQCGHLEDKVIDSRMSKDGTTIRRRRVCLRCDYRYTTYEQI
ERTELRVVKRDNLREALNREKILRGLVKACEKRPVSMDRLDRAVEEIISELHRDHLRE
VPSSEIGKKVIEKLYAIDPVAYIRYVSVYRQFSNVEEFIQEITQMRHQTLIDPLQRKL
PIL"
gene 2545..3072
/locus_tag="BN616_00019"
CDS 2545..3072
/locus_tag="BN616_00019"
/note="product inferred by homology to UniProt"
/codon_start=1
/transl_table=11
/product="putative uncharacterized protein"
/protein_id="CDD96550.1"
/translation="MIGFRNNRPLLKLGDCLITEYGEQWLADALEHAARRAGTTLPFK
DDLLASVRYYLEHECDLSVMQVSELYERLRRMLTEVGLAHLARELKEETPPMTVSVAE
IARSVPFWLFFACELKKQVEELQVHGITKYCFTGRKECVMALQGRKRWDRSCQTLLED
LDFLLSRYEEQEADR"
gene complement(3082..3966)
/locus_tag="BN616_00020"
CDS complement(3082..3966)
/locus_tag="BN616_00020"
/note="product inferred by homology to UniProt"
/codon_start=1
/transl_table=11
/product="nitroreductase"
/protein_id="CDD96552.1"
/translation="MLAGIPIHTAMKLTIDQDKCIHCHLCEKACFLTRFCGFDSLEGA
AEQYCIGCGHCVAVCPRQAITHSGVKSTEPIGPVPGEAEVLNLLMKTRSVRHFKPDPV
SRETWNVLRRAAEYSQSGLNAQSIRLTAVEDPDTLSGIRKALLRMYDKLERLAAFPVT
RLAARLALSPQDYHAVISETATQPLRRQAEERGEDPVLYGAPALLLLTGPASQTARED
ATVLSHNIMMALTALGLGSCYMGGLVLGCRVFKYKPLLRALDLPKGHAVHQALVLGTP
TVQLKRMPERKRRKIRFR"
gene 4036..4368
/locus_tag="BN616_00021"
CDS 4036..4368
/locus_tag="BN616_00021"
/note="product inferred by homology to UniProt"
/codon_start=1
/transl_table=11
/product="site-specific recombinase phage integrase
family"
/protein_id="CDD96554.1"
/translation="MKKPSSSYRCPCGVTLSLIGGKYKIVILWHLYQKAPVRFNELHR
LIPEATTKMFTQQLRELEADGLVERKAYPVIPPRVEYSLTAFGRSVLPVLEAMNEWGA
AYLAARGE"
gene complement(4375..6054)
/locus_tag="BN616_00022"
CDS complement(4375..6054)
/locus_tag="BN616_00022"
/note="product inferred by homology to UniProt"
/codon_start=1
/transl_table=11
/product="sulfate transporter"
/protein_id="CDD96555.1"
/translation="MFRPALLSSLKTYTKQTFLADLFAGLTVGVVAIPLAMAFAIACG
LSPTQGLVTAIVAGFLISLFSGSKYQIGGPTGAFVIIIMGVLEQYHASGLLVCTLMAG
LFLIILGFCRMGALIRFIPFPVTTGFTSGIAVVIFSTQIKDIFGLTITEKIPGDFIEK
WACYFNYFHTINWAALALAVGTVAITLLSRRFWPRVPAMLVGMLGMTAVSVAFSLPVT
TIGQAFGSLPNTLPLPSLPHIEWHNLGALTAPAFTIALLAAIESLLSASVADGMTGGR
HKPNMELIAQGIGNIGSALFGGIPATGAIARTATNIKAGAKSPVSGMIHAVTLLAILM
AFAQYAQQIPLAVLAGILTVVCYNMSEMHTFSRLLKGPRQDAAVLVITFLLTVFVDLV
VAVEVGVVLAALLFMGRMAQISDVSAIKNELLDNDEEDDEDRSTAKLSIPEGVEVFDV
KGPFFFGAVEQFKDQVLETLEHDTKVVILRMRLVPALDATGLNVLSDFCHQCREHGST
LLVCGVQPQPLDVIRHAPFYRELKRYNICENIDAALNRARKIINGPAPKHL"
gene complement(6190..6648)
/locus_tag="BN616_00023"
CDS complement(6190..6648)
/locus_tag="BN616_00023"
/note="product inferred by homology to UniProt"
/codon_start=1
/transl_table=11
/product="argininosuccinate lyase"
/protein_id="CDD96559.1"
/translation="MVAVKGLPLTYNRDLQEDKEPLFDSIDTIKLALDVNAEMMAAMT
VNTARALEAASDPMLLATDLADYLVRRGVPFRKAHELVGKAVAMSISTGTPLNQLSDE
QFASISDAYGTAARDVFELTKAFAQRTNPGAPNSENTRRRIAYWEDILSK"
CONTIG join(CBIA010000126.1:1..6695)
//