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MAG TPA_asm: Dietzia timorensis isolate ChiGjej1B1-18357, whole genome shotgun sequencing project

GenBank: DYXM00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       DYXM01000000             280 rc    DNA     linear   ENV 04-NOV-2021
DEFINITION  MAG TPA_asm: Dietzia timorensis isolate ChiGjej1B1-18357, whole
            genome shotgun sequencing project.
ACCESSION   DYXM00000000
VERSION     DYXM00000000.1
DBLINK      BioProject: PRJNA543206
            BioSample: SAMN21194325
            Sequence Read Archive: SRR6323428
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Dietzia timorensis (gut metagenome)
  ORGANISM  Dietzia timorensis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Mycobacteriales; Dietziaceae; Dietzia.
REFERENCE   1  (bases 1 to 280)
  AUTHORS   Gilroy,R., Ravi,A., Getino,M., Pursley,I., Horton,D.L.,
            Alikhan,N.F., Baker,D., Gharbi,K., Hall,N., Watson,M.,
            Adriaenssens,E.M., Foster-Nyarko,E., Jarju,S., Secka,A.,
            Antonio,M., Oren,A., Chaudhuri,R.R., La Ragione,R., Hildebrand,F.
            and Pallen,M.J.
  TITLE     Extensive microbial diversity within the chicken gut microbiome
            revealed by metagenomics and culture
  JOURNAL   PeerJ 9, e10941 (2021)
   PUBMED   33868800
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 280)
  AUTHORS   Gilroy,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-2021) Microbes in the Food Chain, Quadram
            Institute BioScience, Norwich Research Park, Norwich NR4 7UQ,
            United Kingdom
COMMENT     The Dietzia timorensis whole genome shotgun (WGS) project has the
            project accession DYXM00000000.  This version of the project (01)
            has the accession number DYXM01000000, and consists of sequences
            DYXM01000001-DYXM01000280.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MegaHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 173650x
            Sequencing Technology  :: HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/29/2021 21:27:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,929
            CDSs (total)                      :: 2,884
            Genes (coding)                    :: 2,859
            CDSs (with protein)               :: 2,859
            Genes (RNA)                       :: 45
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 5 of 25
            Pseudo Genes (incomplete)         :: 19 of 25
            Pseudo Genes (internal stop)      :: 3 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Dietzia timorensis"
                     /mol_type="genomic DNA"
                     /isolate="ChiGjej1B1-18357"
                     /isolation_source="jejunum"
                     /host="Gallus gallus"
                     /db_xref="taxon:499555"
                     /environmental_sample
                     /geo_loc_name="China:Guandong"
                     /collection_date="2015-07-02"
                     /metagenome_source="gut metagenome"
                     /note="metagenomic"
WGS         DYXM01000001-DYXM01000280
//
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