LOCUS DYXM01000000 280 rc DNA linear ENV 04-NOV-2021
DEFINITION MAG TPA_asm: Dietzia timorensis isolate ChiGjej1B1-18357, whole
genome shotgun sequencing project.
ACCESSION DYXM00000000
VERSION DYXM00000000.1
DBLINK BioProject: PRJNA543206
BioSample: SAMN21194325
Sequence Read Archive: SRR6323428
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
TPA:assembly.
SOURCE Dietzia timorensis (gut metagenome)
ORGANISM Dietzia timorensis
Bacteria; Bacillati; Actinomycetota; Actinomycetes;
Mycobacteriales; Dietziaceae; Dietzia.
REFERENCE 1 (bases 1 to 280)
AUTHORS Gilroy,R., Ravi,A., Getino,M., Pursley,I., Horton,D.L.,
Alikhan,N.F., Baker,D., Gharbi,K., Hall,N., Watson,M.,
Adriaenssens,E.M., Foster-Nyarko,E., Jarju,S., Secka,A.,
Antonio,M., Oren,A., Chaudhuri,R.R., La Ragione,R., Hildebrand,F.
and Pallen,M.J.
TITLE Extensive microbial diversity within the chicken gut microbiome
revealed by metagenomics and culture
JOURNAL PeerJ 9, e10941 (2021)
PUBMED 33868800
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 280)
AUTHORS Gilroy,R.
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2021) Microbes in the Food Chain, Quadram
Institute BioScience, Norwich Research Park, Norwich NR4 7UQ,
United Kingdom
COMMENT The Dietzia timorensis whole genome shotgun (WGS) project has the
project accession DYXM00000000. This version of the project (01)
has the accession number DYXM01000000, and consists of sequences
DYXM01000001-DYXM01000280.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: MegaHIT v. 1.2.9
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 173650x
Sequencing Technology :: HiSeq X Ten
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 10/29/2021 21:27:15
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.3
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 2,929
CDSs (total) :: 2,884
Genes (coding) :: 2,859
CDSs (with protein) :: 2,859
Genes (RNA) :: 45
rRNAs :: 1 (5S)
complete rRNAs :: 1 (5S)
tRNAs :: 41
ncRNAs :: 3
Pseudo Genes (total) :: 25
CDSs (without protein) :: 25
Pseudo Genes (ambiguous residues) :: 0 of 25
Pseudo Genes (frameshifted) :: 5 of 25
Pseudo Genes (incomplete) :: 19 of 25
Pseudo Genes (internal stop) :: 3 of 25
Pseudo Genes (multiple problems) :: 2 of 25
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..280
/organism="Dietzia timorensis"
/mol_type="genomic DNA"
/isolate="ChiGjej1B1-18357"
/isolation_source="jejunum"
/host="Gallus gallus"
/db_xref="taxon:499555"
/environmental_sample
/geo_loc_name="China:Guandong"
/collection_date="2015-07-02"
/metagenome_source="gut metagenome"
/note="metagenomic"
WGS DYXM01000001-DYXM01000280
//