LOCUS DYUX01000000 30 rc DNA linear ENV 04-NOV-2021
DEFINITION MAG TPA_asm: Bifidobacterium pullorum subsp. gallinarum isolate
ChiBcolR7-4860, whole genome shotgun sequencing project.
ACCESSION DYUX00000000
VERSION DYUX00000000.1
DBLINK BioProject: PRJNA543206
BioSample: SAMN21194358
Sequence Read Archive: SRR6323178
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
TPA:assembly.
SOURCE Bifidobacterium pullorum subsp. gallinarum (gut metagenome)
ORGANISM Bifidobacterium pullorum subsp. gallinarum
Bacteria; Bacillati; Actinomycetota; Actinomycetes;
Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE 1 (bases 1 to 30)
AUTHORS Gilroy,R., Ravi,A., Getino,M., Pursley,I., Horton,D.L.,
Alikhan,N.F., Baker,D., Gharbi,K., Hall,N., Watson,M.,
Adriaenssens,E.M., Foster-Nyarko,E., Jarju,S., Secka,A.,
Antonio,M., Oren,A., Chaudhuri,R.R., La Ragione,R., Hildebrand,F.
and Pallen,M.J.
TITLE Extensive microbial diversity within the chicken gut microbiome
revealed by metagenomics and culture
JOURNAL PeerJ 9, e10941 (2021)
PUBMED 33868800
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 30)
AUTHORS Gilroy,R.
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2021) Microbes in the Food Chain, Quadram
Institute BioScience, Norwich Research Park, Norwich NR4 7UQ,
United Kingdom
COMMENT The Bifidobacterium pullorum subsp. gallinarum whole genome shotgun
(WGS) project has the project accession DYUX00000000. This version
of the project (01) has the accession number DYUX01000000, and
consists of sequences DYUX01000001-DYUX01000030.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: MegaHIT v. 1.2.9
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 432093x
Sequencing Technology :: HiSeq X Ten
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 10/29/2021 18:04:13
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 5.3
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,712
CDSs (total) :: 1,657
Genes (coding) :: 1,633
CDSs (with protein) :: 1,633
Genes (RNA) :: 55
rRNAs :: 1 (5S)
complete rRNAs :: 1 (5S)
tRNAs :: 51
ncRNAs :: 3
Pseudo Genes (total) :: 24
CDSs (without protein) :: 24
Pseudo Genes (ambiguous residues) :: 0 of 24
Pseudo Genes (frameshifted) :: 1 of 24
Pseudo Genes (incomplete) :: 24 of 24
Pseudo Genes (internal stop) :: 1 of 24
Pseudo Genes (multiple problems) :: 1 of 24
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..30
/organism="Bifidobacterium pullorum subsp. gallinarum"
/mol_type="genomic DNA"
/isolate="ChiBcolR7-4860"
/isolation_source="colorectum"
/host="Gallus gallus"
/sub_species="gallinarum"
/db_xref="taxon:78344"
/environmental_sample
/geo_loc_name="China:Beijing"
/collection_date="2016-11-12"
/metagenome_source="gut metagenome"
/note="metagenomic"
WGS DYUX01000001-DYUX01000030
//