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MAG TPA_asm: Bifidobacterium pullorum subsp. gallinarum isolate ChiBcolR7-4860, whole genome shotgun sequencing project

GenBank: DYUX00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       DYUX01000000              30 rc    DNA     linear   ENV 04-NOV-2021
DEFINITION  MAG TPA_asm: Bifidobacterium pullorum subsp. gallinarum isolate
            ChiBcolR7-4860, whole genome shotgun sequencing project.
ACCESSION   DYUX00000000
VERSION     DYUX00000000.1
DBLINK      BioProject: PRJNA543206
            BioSample: SAMN21194358
            Sequence Read Archive: SRR6323178
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Bifidobacterium pullorum subsp. gallinarum (gut metagenome)
  ORGANISM  Bifidobacterium pullorum subsp. gallinarum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 30)
  AUTHORS   Gilroy,R., Ravi,A., Getino,M., Pursley,I., Horton,D.L.,
            Alikhan,N.F., Baker,D., Gharbi,K., Hall,N., Watson,M.,
            Adriaenssens,E.M., Foster-Nyarko,E., Jarju,S., Secka,A.,
            Antonio,M., Oren,A., Chaudhuri,R.R., La Ragione,R., Hildebrand,F.
            and Pallen,M.J.
  TITLE     Extensive microbial diversity within the chicken gut microbiome
            revealed by metagenomics and culture
  JOURNAL   PeerJ 9, e10941 (2021)
   PUBMED   33868800
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30)
  AUTHORS   Gilroy,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-2021) Microbes in the Food Chain, Quadram
            Institute BioScience, Norwich Research Park, Norwich NR4 7UQ,
            United Kingdom
COMMENT     The Bifidobacterium pullorum subsp. gallinarum whole genome shotgun
            (WGS) project has the project accession DYUX00000000.  This version
            of the project (01) has the accession number DYUX01000000, and
            consists of sequences DYUX01000001-DYUX01000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MegaHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 432093x
            Sequencing Technology  :: HiSeq X Ten
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/29/2021 18:04:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,712
            CDSs (total)                      :: 1,657
            Genes (coding)                    :: 1,633
            CDSs (with protein)               :: 1,633
            Genes (RNA)                       :: 55
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 1 of 24
            Pseudo Genes (incomplete)         :: 24 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30
                     /organism="Bifidobacterium pullorum subsp. gallinarum"
                     /mol_type="genomic DNA"
                     /isolate="ChiBcolR7-4860"
                     /isolation_source="colorectum"
                     /host="Gallus gallus"
                     /sub_species="gallinarum"
                     /db_xref="taxon:78344"
                     /environmental_sample
                     /geo_loc_name="China:Beijing"
                     /collection_date="2016-11-12"
                     /metagenome_source="gut metagenome"
                     /note="metagenomic"
WGS         DYUX01000001-DYUX01000030
//
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