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Danio rerio strain Tuebingen, whole genome shotgun sequencing, Contig_0095449, whole genome shotgun sequence

GenBank: CABZ01087375.1

FASTA Graphics 

LOCUS       CABZ01087375            2391 bp    DNA     linear   VRT 21-MAY-2010
DEFINITION  Danio rerio strain Tuebingen, whole genome shotgun sequencing,
            Contig_0095449, whole genome shotgun sequence.
ACCESSION   CABZ01087375 CABZ01000000
VERSION     CABZ01087375.1
DBLINK      BioProject: PRJNA11776
            BioSample: SAMEA3146315
KEYWORDS    WGS.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1
  AUTHORS   Yong,G. and Ning,Z.
  TITLE     Zebrafish Whole Genome Shotgun Assembly WGS31
  JOURNAL   Unpublished
REFERENCE   2
  AUTHORS   Howe,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAY-2010) Howe K., Wellcome Trust, Sanger Institute,
            Hinxton, Cambridge CB10 1SA, UK
COMMENT     WGS31 is a novel whole genome shotgun assembly based on the
            datasets of 7.5x capillary shotgun reads and 30x Illumina reads.
            Contigs were first generated from the Illumina data of a
            double-haploid Tuebingen individual using Fuzzypath (Ning, Z.,
            unpublished) and then combined with the capillary reads of another
            double-haploid Tuebingen individual, assembled with Phusion (PMID:
            12529309).
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Danio rerio"
                     /mol_type="genomic DNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
ORIGIN      
        1 acacacacac acacacacac acacacacac acacacacac acacacacac acacacacac
       61 acttgctgct ctgaaacgtg ctgtaagatg ttttgggacc ctgagacatt ctgataactg
      121 gaaatcagac gtcatgagat gaagagaata tctgagagtg ctttatatct gtataacctc
      181 atgaggaggt cctcattcca ctgtggtgac ccctgattaa taaacagact aagctgaagg
      241 agaatgaatg aatgaataaa aggagctcag ttactaatta gtgatttaat tacttgacta
      301 aatactattt aaaatcttat aaatctaaat gcagactata attaaactct tttaatgctc
      361 ttttaattag aattatatta tgtatataat ttttttcctt gtgttgaaca aaaaaagaag
      421 atattttgaa gaatgccgaa agcctgtaac cattgacttt cacagtattt gtctttcctc
      481 tggatgtcag tgcttacagg tttttaagct gtaatcaaca ggataaagag actcaaaggt
      541 tatggaccta aaagagtaat agtgagcagg ttttatgttt tgcgtgaact atccccttaa
      601 atctctgtgt gtgcgtatgt gaagagttca gatgcaaaac catctaaatc caccagagct
      661 gtttttattt gtaaatcagc attttctatc agggtgctgt aattgggttg agcagtttca
      721 ttttcagttt cttctttttc ttcttcttcc attttttatt ttgagtttat aaaggaagat
      781 gcatatataa cgtacatact ctctcatgca gaaagagact tgccgatcta gtaaatgctt
      841 ttgtattttc tttctttaaa caacaacaac aacaacaact atgagcagta aaacatgggc
      901 agctgcaaat ccttaaagtt ttcctttaaa gaagaaaaga tacttattta cacagttaaa
      961 catctttctc cagaagaaca aatattatca gacatactgt gaaaatttct tcgctctgtt
     1021 aaacatcatt tgggatatat ttaataaaga aatacaattc aaaggagggc aaataattct
     1081 gatgtacact gtatatataa attgttgttg ttattcttgt tgttattatt attaataatt
     1141 taccaattga tattattatc taattttcca ctatttgata tatatttgat tattttatac
     1201 atatatatat atatactatt ttattaaaat cagccggcaa gtatatacaa gttaaagttc
     1261 aaaacaggct gcaaaaatca tctaaacaat aaaaaaaaca cttgcaatac ttcctccatc
     1321 agtgctttat aataaacact ttaaatgagg gttcaacttt taaaagtttc tttagaactt
     1381 tagcagacta taaacccctg atgatagaat atctgtgatg tccaggcctc taatatccaa
     1441 aatagcgtat tgtggtcttc tgacgctgcc atttagtgtg ctttcacacc tacacttttg
     1501 tttgggaacg tatctcgttt gcccagttag cgcggttcgt ttggcatatg tgaacagggc
     1561 aatcgcgctc tgttccgcgc caaagtaatc gctccgagat ggcttgaatg aggtggtctc
     1621 aactcgactg aaacgaaccc tggagcggtt cgattacagt gagaaagcga tgcgatccga
     1681 gcgcggttat atcacagtgt ttatggatat gtaataggct tacggctata tgaagagaga
     1741 attatgagta gggcgggaag tttcgcgagt ctccggatgc ccgcaaatga gtgatgatct
     1801 cccggtaatc tcgcgtctct ctcccggtcc tcaaataggc atcgtcgcgc acccttctca
     1861 ccctccccac cgcatctctc ctcagacaca tcgcgcgcac accctgtcaa tcaccaccaa
     1921 accaccacct ctcctgacag ctgagcggga ctttgcaaaa taaaccctga cactctgacc
     1981 aatgtgagga gagtttactc acacgtgact tgttttagct cttttggtcc gattagaaac
     2041 tttgcagtgt gaaagcgaac cgctccaaga gcaaagagca gccatgtaac aattataatc
     2101 tctgtttcag aacaactgaa tccattcaca ggtgtgaacg cagcctcaga tgatgagaag
     2161 cacaaatatc tgttgaacat gcctgaagct cggtgtgttg ttcagcagct ttagcatgtg
     2221 agctcttcat ttgctgtcgt gtgtgttgtg cagatgttca tgtctgaggg aggaaagatc
     2281 agtcagaaga ttaaggtctg gttcagtgat tacttcaaca tctctgattt cctggccatc
     2341 ctgatgttct tcgtgggctt cggtctgcgt ctggtgtcgg aggtgttcat c
//
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Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the trpm7 gene (NM_001030061.1).

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