Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
GenBank: CABZ01087375.1
FASTA Graphics
LOCUS CABZ01087375 2391 bp DNA linear VRT 21-MAY-2010 DEFINITION Danio rerio strain Tuebingen, whole genome shotgun sequencing, Contig_0095449, whole genome shotgun sequence. ACCESSION CABZ01087375 CABZ01000000 VERSION CABZ01087375.1 DBLINK BioProject: PRJNA11776 BioSample: SAMEA3146315 KEYWORDS WGS. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 AUTHORS Yong,G. and Ning,Z. TITLE Zebrafish Whole Genome Shotgun Assembly WGS31 JOURNAL Unpublished REFERENCE 2 AUTHORS Howe,K. TITLE Direct Submission JOURNAL Submitted (13-MAY-2010) Howe K., Wellcome Trust, Sanger Institute, Hinxton, Cambridge CB10 1SA, UK COMMENT WGS31 is a novel whole genome shotgun assembly based on the datasets of 7.5x capillary shotgun reads and 30x Illumina reads. Contigs were first generated from the Illumina data of a double-haploid Tuebingen individual using Fuzzypath (Ning, Z., unpublished) and then combined with the capillary reads of another double-haploid Tuebingen individual, assembled with Phusion (PMID: 12529309). FEATURES Location/Qualifiers source 1..2391 /organism="Danio rerio" /mol_type="genomic DNA" /strain="Tuebingen" /db_xref="taxon:7955" ORIGIN 1 acacacacac acacacacac acacacacac acacacacac acacacacac acacacacac 61 acttgctgct ctgaaacgtg ctgtaagatg ttttgggacc ctgagacatt ctgataactg 121 gaaatcagac gtcatgagat gaagagaata tctgagagtg ctttatatct gtataacctc 181 atgaggaggt cctcattcca ctgtggtgac ccctgattaa taaacagact aagctgaagg 241 agaatgaatg aatgaataaa aggagctcag ttactaatta gtgatttaat tacttgacta 301 aatactattt aaaatcttat aaatctaaat gcagactata attaaactct tttaatgctc 361 ttttaattag aattatatta tgtatataat ttttttcctt gtgttgaaca aaaaaagaag 421 atattttgaa gaatgccgaa agcctgtaac cattgacttt cacagtattt gtctttcctc 481 tggatgtcag tgcttacagg tttttaagct gtaatcaaca ggataaagag actcaaaggt 541 tatggaccta aaagagtaat agtgagcagg ttttatgttt tgcgtgaact atccccttaa 601 atctctgtgt gtgcgtatgt gaagagttca gatgcaaaac catctaaatc caccagagct 661 gtttttattt gtaaatcagc attttctatc agggtgctgt aattgggttg agcagtttca 721 ttttcagttt cttctttttc ttcttcttcc attttttatt ttgagtttat aaaggaagat 781 gcatatataa cgtacatact ctctcatgca gaaagagact tgccgatcta gtaaatgctt 841 ttgtattttc tttctttaaa caacaacaac aacaacaact atgagcagta aaacatgggc 901 agctgcaaat ccttaaagtt ttcctttaaa gaagaaaaga tacttattta cacagttaaa 961 catctttctc cagaagaaca aatattatca gacatactgt gaaaatttct tcgctctgtt 1021 aaacatcatt tgggatatat ttaataaaga aatacaattc aaaggagggc aaataattct 1081 gatgtacact gtatatataa attgttgttg ttattcttgt tgttattatt attaataatt 1141 taccaattga tattattatc taattttcca ctatttgata tatatttgat tattttatac 1201 atatatatat atatactatt ttattaaaat cagccggcaa gtatatacaa gttaaagttc 1261 aaaacaggct gcaaaaatca tctaaacaat aaaaaaaaca cttgcaatac ttcctccatc 1321 agtgctttat aataaacact ttaaatgagg gttcaacttt taaaagtttc tttagaactt 1381 tagcagacta taaacccctg atgatagaat atctgtgatg tccaggcctc taatatccaa 1441 aatagcgtat tgtggtcttc tgacgctgcc atttagtgtg ctttcacacc tacacttttg 1501 tttgggaacg tatctcgttt gcccagttag cgcggttcgt ttggcatatg tgaacagggc 1561 aatcgcgctc tgttccgcgc caaagtaatc gctccgagat ggcttgaatg aggtggtctc 1621 aactcgactg aaacgaaccc tggagcggtt cgattacagt gagaaagcga tgcgatccga 1681 gcgcggttat atcacagtgt ttatggatat gtaataggct tacggctata tgaagagaga 1741 attatgagta gggcgggaag tttcgcgagt ctccggatgc ccgcaaatga gtgatgatct 1801 cccggtaatc tcgcgtctct ctcccggtcc tcaaataggc atcgtcgcgc acccttctca 1861 ccctccccac cgcatctctc ctcagacaca tcgcgcgcac accctgtcaa tcaccaccaa 1921 accaccacct ctcctgacag ctgagcggga ctttgcaaaa taaaccctga cactctgacc 1981 aatgtgagga gagtttactc acacgtgact tgttttagct cttttggtcc gattagaaac 2041 tttgcagtgt gaaagcgaac cgctccaaga gcaaagagca gccatgtaac aattataatc 2101 tctgtttcag aacaactgaa tccattcaca ggtgtgaacg cagcctcaga tgatgagaag 2161 cacaaatatc tgttgaacat gcctgaagct cggtgtgttg ttcagcagct ttagcatgtg 2221 agctcttcat ttgctgtcgt gtgtgttgtg cagatgttca tgtctgaggg aggaaagatc 2281 agtcagaaga ttaaggtctg gttcagtgat tacttcaaca tctctgattt cctggccatc 2341 ctgatgttct tcgtgggctt cggtctgcgt ctggtgtcgg aggtgttcat c //
Whole sequence Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on