LOCUS BC092913 1080 bp mRNA linear VRT 17-JUL-2006
DEFINITION Danio rerio zgc:110388, mRNA (cDNA clone MGC:110388 IMAGE:7411335),
complete cds.
ACCESSION BC092913
VERSION BC092913.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1080)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1080)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-APR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Takuya Sakaguchi and Didier Stainier
cDNA Library Preparation: Dr. Sumio Sugano
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 211 Row: p Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62204419.
FEATURES Location/Qualifiers
source 1..1080
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:110388 IMAGE:7411335"
/tissue_type="Liver, AB, adult zebrafish"
/clone_lib="NIH_ZGC_8"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..1080
/gene="zgc:110388"
/db_xref="GeneID:550350"
/db_xref="ZFIN:ZDB-GENE-050417-142"
CDS 54..782
/gene="zgc:110388"
/codon_start=1
/product="zgc:110388"
/protein_id="AAH92913.1"
/db_xref="GeneID:550350"
/db_xref="ZFIN:ZDB-GENE-050417-142"
/translation="MPKSKRDKKISLTKTTKKGLEAKQNLIEELRKCADIYRYVFVFS
VENMRNNKLKDIRTAWRHSRFFFGKNKVMMIALGKGPTDEYKDNLHKLSRFLRGEVGV
LFTNKTKDEVQEYFGNFKEVDYARAGNTASMAVTLDEGPLDQFPHSMEPQLRQLGLPT
ALKKGAVTLIKDFEVCKEGDTLTPEQARILKLFGFEMAEFKLSIKCMWNSESGEFEKL
TDGDDDDETKEAEDEDSEGEEGSE"
ORIGIN
1 gttcgtgaag cactctttaa gcgaagagga acacacagca caacgtgaga accatgccga
61 aatccaagag agacaagaaa atttctttaa ccaaaacaac caagaagggg ttggaagcca
121 aacaaaactt gattgaagag ctgcggaaat gtgcagacat ctacagatac gtgtttgtgt
181 tctcagtgga aaacatgaga aacaacaaac tgaaagacat caggacggcc tggaggcata
241 gcaggttctt cttcggtaag aataaagtca tgatgattgc gctgggtaaa ggaccaacag
301 acgaatacaa agataacctg cataaactga gcaggtttct ccgaggggaa gtgggggttt
361 tgttcacaaa caaaactaaa gatgaagtgc aggaatattt cgggaacttt aaagaggtgg
421 attatgctcg tgctggaaac acagcaagca tggcggtgac tctggatgag ggtccgctgg
481 atcagtttcc acactcaatg gagccgcagc tcagacagct cggcctcccg accgctctga
541 agaaaggtgc ggtgacgctg ataaaggatt ttgaagtgtg taaagaggga gacacactca
601 cacctgaaca ggctcggatt ctgaaactct ttggattcga gatggcggag ttcaagttgt
661 cgattaagtg catgtggaat tctgaatccg gggagtttga gaagctgaca gacggtgatg
721 atgatgatga gactaaagaa gcagaggatg aagactcaga aggcgaagaa gggagtgaat
781 aaaacctgca cacacacaat ggactttatc tgccatgaac atttgtatgt gttgatccga
841 catgaacatg tacactttat tttaaagagt gttcctttag tgagacttac tgtcttctgc
901 acactgttga ggttatattt tcactgtctc tacattaata caagattctg tactgcacag
961 agagaacggc tgagggaaac gtgatctgtg ctattctaac tgttcattat aagttattgt
1021 aactcatttt tggcaacgag taaacaaaca acagtgatcc cacaaaaaaa aaaaaaaaaa
//