LOCUS BC090793 1055 bp mRNA linear VRT 15-JUL-2006
DEFINITION Danio rerio zgc:110848, mRNA (cDNA clone MGC:110848 IMAGE:7156048),
complete cds.
ACCESSION BC090793
VERSION BC090793.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1055)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1055)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-FEB-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Genome Institute of Singapore
cDNA Library Preparation: S. Mathavan, Chia-Lin Wei, and Yijun
Ruan, Genome Institute of Singapore
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 66 Row: p Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 60416108.
FEATURES Location/Qualifiers
source 1..1055
/organism="Danio rerio"
/mol_type="mRNA"
/strain="Singapore local strain"
/db_xref="taxon:7955"
/clone="MGC:110848 IMAGE:7156048"
/tissue_type="Embryo, 7 different stages (from just
fertilized embryos to 72 hours just hatched baby fish)"
/clone_lib="GISZF001_ra"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1055
/gene="zgc:110848"
/db_xref="GeneID:503751"
/db_xref="ZFIN:ZDB-GENE-050306-32"
CDS 12..698
/gene="zgc:110848"
/codon_start=1
/product="zgc:110848"
/protein_id="AAH90793.1"
/db_xref="GeneID:503751"
/db_xref="ZFIN:ZDB-GENE-050306-32"
/translation="MAAVKLQKSVVSQAGKHTASVIFLHGSGDTGPGLRSWVLDVLGQ
NLAFENIRVIYPTASLRPYTPMRGAPSHVWFDRHKISQHCPEHLESIDSMCDHLGDIV
QDELRAGIPKHRMVIGGFPMGGAMALHLVCRHHQDIAGIFCLSSFLNKDSAVYQAVEN
AQRPLPELLQCHGTSDELVFHDWGEKTNTLLKKAGLNASFHSFPDLNHQLCRQELELL
RSWILKKLSI"
ORIGIN
1 gggggataaa catggctgcg gttaaactcc agaagagtgt tgtgagccag gctgggaaac
61 acacagcttc tgttatcttt cttcacggct caggagacac agggccaggc ctgcgcagct
121 gggttttgga tgttttagga caaaacttgg catttgaaaa catccgggtg atttatccca
181 cagcctcact caggccgtac acacccatgc gaggggcgcc gtctcatgtg tggtttgatc
241 gtcacaagat ttctcagcat tgccccgagc acttggagtc gatagattcc atgtgtgatc
301 atttaggtga cattgtgcag gatgagctcc gagccgggat cccaaaacac aggatggtta
361 ttggtggttt ccccatgggt ggagccatgg cgcttcatct ggtctgcagg caccatcagg
421 acattgctgg catcttctgt ctgtccagct tccttaacaa agactcagcg gtatatcagg
481 cagtagaaaa tgcacagcgc cccctacctg agctcctgca gtgtcacggc acatcagacg
541 agctggtttt ccatgactgg ggcgagaaga cgaacacgct actgaaaaaa gctggactca
601 atgcatcttt ccattccttc ccagacctca accatcagtt gtgtcgacaa gaactggagt
661 tgcttcgctc ctggatcctg aagaagcttt ccatttaaag agtccttaat tctagacaat
721 gaccactgaa ccaccgtgcc accttcatgg agcttttgat ccatttaaaa aaaagtctca
781 gtcacatttg catggtttaa aacaaaatgt ccacatgaaa atgcaaaaag gccccatgaa
841 gtgctgtcaa ggtcatgcca aagcaacaga tggcgctata ctcctaaccg taaagtcacg
901 ttggccaatc aaaagataga tattatatat atttttgatt tcggttggct gtcaacatga
961 cgtatgtctg tttggagttc gggaaatcgc tgcacataat ctgatgtcat acaaaataaa
1021 tgaaggtaca accagaccaa aaaaaaaaaa aaaaa
//