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Danio rerio zgc:55452, mRNA (cDNA clone MGC:55452 IMAGE:2639828), complete cds

GenBank: BC044173.1

FASTA Graphics 

LOCUS       BC044173                1860 bp    mRNA    linear   VRT 15-JUL-2006
DEFINITION  Danio rerio zgc:55452, mRNA (cDNA clone MGC:55452 IMAGE:2639828),
            complete cds.
ACCESSION   BC044173
VERSION     BC044173.1
KEYWORDS    MGC.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1860)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
            cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 101 Row: h Column: 13
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 28278636.
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="AB"
                     /db_xref="taxon:7955"
                     /clone="MGC:55452 IMAGE:2639828"
                     /tissue_type="Whole body, adult, (one male and one female,
                     including unfertilized eggs)"
                     /clone_lib="Sugano Kawakami zebrafish DRA"
                     /lab_host="DH10B"
                     /note="Vector: pME18S-FL3"
     gene            1..1860
                     /gene="zgc:55452"
                     /gene_synonym="MGC55452"
                     /gene_synonym="Ube2r2"
                     /db_xref="GeneID:393933"
                     /db_xref="ZFIN:ZDB-GENE-040426-713"
     CDS             233..958
                     /gene="zgc:55452"
                     /gene_synonym="MGC55452"
                     /gene_synonym="Ube2r2"
                     /codon_start=1
                     /product="zgc:55452"
                     /protein_id="AAH44173.1"
                     /db_xref="GeneID:393933"
                     /db_xref="ZFIN:ZDB-GENE-040426-713"
                     /translation="MAQHGHHHVASSQKALMLELKSLQDEPVEGFKITLVDESDLYNW
                     EVAIFGPPNTHYEGGYFKARIKFPIDYPYSPPAFRFLTKMWHPNIYENGDVCISILHP
                     PVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWRDSKGK
                     DREYAEIIRKQVLATKADAERDGVKVPTTLAEYCVRTRAPPADEGSNFFYDDYYDDED
                     LDDDEEEGEDCCYDEDDSGTEDS"
ORIGIN      
        1 agcacgctga atatcgacgg caggtgctta gcgagagact tcaaatgccc gacgagaacc
       61 gcaaatccgc gcggtctgcc agtcgttgag cacagttttg ccatcgagtg gctttagttg
      121 ggtttgttcg cgactcaacg aacggcggcg gttgtaaaat aaaataaaaa aacaagcgaa
      181 ggaaagttgt ttgcggggtt attttggatg cctggtcgtt tgttttcgta atatggctca
      241 gcatggacac catcatgtcg cgagttctca aaaggctttg atgttggagc tgaaaagtct
      301 ccaggacgag ccggttgaag gcttcaaaat aactttagtc gacgagtcgg acttgtacaa
      361 ctgggaagtc gcgattttcg gacccccaaa cacgcactat gaggggggct attttaaggc
      421 acgcatcaaa ttccctattg actatccata ctcgcctcct gccttcagat tcctcaccaa
      481 gatgtggcat cccaacatct atgagaatgg cgatgtctgt atttccatac tgcacccacc
      541 agtagatgat ccccaaagtg gagagctgcc gtcagagagg tggaacccaa cacagaacgt
      601 caggacgatc ttattgagtg ttatctcgct gctgaatgag cccaacactt tctcgccagc
      661 caatgtggat gcctccgtta tgtaccgtaa atggagggac agcaagggga aagaccgaga
      721 gtatgcagag atcatcagga agcaggtttt agctaccaaa gctgatgctg aacgggatgg
      781 cgtaaaagtg cccaccacac tggctgaata ctgtgttcgt acccgagctc caccagcaga
      841 tgagggctct aactttttct acgatgacta ctacgatgat gaggacttag atgacgatga
      901 agaggaaggt gaggactgtt gctatgatga agacgactcc ggaacggagg actcttgaca
      961 gccaaaactc accacttcca gtttccgttt ggtttcatag ctttttaaat caaggcaaaa
     1021 agaaacgttt cgtgtttgaa gatctgagct catcaaaaag ggcagcaaac tgatcccggt
     1081 cagacgcttt atggatttat tatttttttt attccccaca ttttgttttg tctagtcttt
     1141 caggggcagg tcgggtacaa ccaatcagtg tgcaacagtt cagctcatgt ttatttgatc
     1201 ctccataaac atcttgcctt tcaaaggcgt ctgatctcag gttttcattc tctgtgatgt
     1261 ttttttaaag tattgccatc ttgggttggc gggaaaaaag tagcgaatac accttctcag
     1321 ggctacttct cttacttgca ccacaatgca ttatattcag cttctgtagc catggactgg
     1381 acatgatcaa tgttctagag gaagaggatc tcagcaaagc ttcacctacc attaatacca
     1441 tactaagctt gggactttta atgcgtttca tattatccca aaacaaacct gtcttgttgg
     1501 ttttgttttt cgctttcatg gggttgccag gtagtgtgtt tgaatcttcg ctatatttag
     1561 ttcctccgtc acatttgagg atgttttagt tttgttaaat atatatatat atatatccct
     1621 ttttatttta aagctttgtg gtgactcatt atttttttcc gaagctaaaa tcctcttcag
     1681 gaaaatggac atgagacatt ggtgtgattt gacccccaaa ttcacaagcg tacaagggta
     1741 ttttgggcca catttccccc ttttcttgtt taagcttgtt ttttttttgt tttttttggt
     1801 atctatttaa tgtctgaata aagatcttta ttagaaaaaa aaaaaaaaaa aaaaaaaaaa
//
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Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the cdc34a gene (NM_200958.1).

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