LOCUS BC044173 1860 bp mRNA linear VRT 15-JUL-2006
DEFINITION Danio rerio zgc:55452, mRNA (cDNA clone MGC:55452 IMAGE:2639828),
complete cds.
ACCESSION BC044173
VERSION BC044173.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1860)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1860)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 101 Row: h Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28278636.
FEATURES Location/Qualifiers
source 1..1860
/organism="Danio rerio"
/mol_type="mRNA"
/strain="AB"
/db_xref="taxon:7955"
/clone="MGC:55452 IMAGE:2639828"
/tissue_type="Whole body, adult, (one male and one female,
including unfertilized eggs)"
/clone_lib="Sugano Kawakami zebrafish DRA"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..1860
/gene="zgc:55452"
/gene_synonym="MGC55452"
/gene_synonym="Ube2r2"
/db_xref="GeneID:393933"
/db_xref="ZFIN:ZDB-GENE-040426-713"
CDS 233..958
/gene="zgc:55452"
/gene_synonym="MGC55452"
/gene_synonym="Ube2r2"
/codon_start=1
/product="zgc:55452"
/protein_id="AAH44173.1"
/db_xref="GeneID:393933"
/db_xref="ZFIN:ZDB-GENE-040426-713"
/translation="MAQHGHHHVASSQKALMLELKSLQDEPVEGFKITLVDESDLYNW
EVAIFGPPNTHYEGGYFKARIKFPIDYPYSPPAFRFLTKMWHPNIYENGDVCISILHP
PVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWRDSKGK
DREYAEIIRKQVLATKADAERDGVKVPTTLAEYCVRTRAPPADEGSNFFYDDYYDDED
LDDDEEEGEDCCYDEDDSGTEDS"
ORIGIN
1 agcacgctga atatcgacgg caggtgctta gcgagagact tcaaatgccc gacgagaacc
61 gcaaatccgc gcggtctgcc agtcgttgag cacagttttg ccatcgagtg gctttagttg
121 ggtttgttcg cgactcaacg aacggcggcg gttgtaaaat aaaataaaaa aacaagcgaa
181 ggaaagttgt ttgcggggtt attttggatg cctggtcgtt tgttttcgta atatggctca
241 gcatggacac catcatgtcg cgagttctca aaaggctttg atgttggagc tgaaaagtct
301 ccaggacgag ccggttgaag gcttcaaaat aactttagtc gacgagtcgg acttgtacaa
361 ctgggaagtc gcgattttcg gacccccaaa cacgcactat gaggggggct attttaaggc
421 acgcatcaaa ttccctattg actatccata ctcgcctcct gccttcagat tcctcaccaa
481 gatgtggcat cccaacatct atgagaatgg cgatgtctgt atttccatac tgcacccacc
541 agtagatgat ccccaaagtg gagagctgcc gtcagagagg tggaacccaa cacagaacgt
601 caggacgatc ttattgagtg ttatctcgct gctgaatgag cccaacactt tctcgccagc
661 caatgtggat gcctccgtta tgtaccgtaa atggagggac agcaagggga aagaccgaga
721 gtatgcagag atcatcagga agcaggtttt agctaccaaa gctgatgctg aacgggatgg
781 cgtaaaagtg cccaccacac tggctgaata ctgtgttcgt acccgagctc caccagcaga
841 tgagggctct aactttttct acgatgacta ctacgatgat gaggacttag atgacgatga
901 agaggaaggt gaggactgtt gctatgatga agacgactcc ggaacggagg actcttgaca
961 gccaaaactc accacttcca gtttccgttt ggtttcatag ctttttaaat caaggcaaaa
1021 agaaacgttt cgtgtttgaa gatctgagct catcaaaaag ggcagcaaac tgatcccggt
1081 cagacgcttt atggatttat tatttttttt attccccaca ttttgttttg tctagtcttt
1141 caggggcagg tcgggtacaa ccaatcagtg tgcaacagtt cagctcatgt ttatttgatc
1201 ctccataaac atcttgcctt tcaaaggcgt ctgatctcag gttttcattc tctgtgatgt
1261 ttttttaaag tattgccatc ttgggttggc gggaaaaaag tagcgaatac accttctcag
1321 ggctacttct cttacttgca ccacaatgca ttatattcag cttctgtagc catggactgg
1381 acatgatcaa tgttctagag gaagaggatc tcagcaaagc ttcacctacc attaatacca
1441 tactaagctt gggactttta atgcgtttca tattatccca aaacaaacct gtcttgttgg
1501 ttttgttttt cgctttcatg gggttgccag gtagtgtgtt tgaatcttcg ctatatttag
1561 ttcctccgtc acatttgagg atgttttagt tttgttaaat atatatatat atatatccct
1621 ttttatttta aagctttgtg gtgactcatt atttttttcc gaagctaaaa tcctcttcag
1681 gaaaatggac atgagacatt ggtgtgattt gacccccaaa ttcacaagcg tacaagggta
1741 ttttgggcca catttccccc ttttcttgtt taagcttgtt ttttttttgt tttttttggt
1801 atctatttaa tgtctgaata aagatcttta ttagaaaaaa aaaaaaaaaa aaaaaaaaaa
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