LOCUS AK161016 4387 bp mRNA linear HTC 26-JUL-2016
DEFINITION Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
library, clone:4121404L19 product:chromatin assembly factor 1,
subunit A (p150), full insert sequence.
ACCESSION AK161016
VERSION AK161016.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 4387)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N.,
Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D.,
Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4121404L19.
FEATURES Location/Qualifiers
source 1..4387
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:4121404L19"
/db_xref="MGI:MGI:3533181"
/db_xref="taxon:10090"
/clone="4121404L19"
/tissue_type="head"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="16 days embryo"
CDS <1..1660
/note="unnamed protein product; chromatin assembly factor
1, subunit A (p150) (MGD|MGI:1351331 GB|BC053740,
evidence: BLASTN, 100%, match=2137);
putative;
start codon is not identified"
/codon_start=2
/protein_id="BAE36149.1"
/translation="EKREKDEKEKAEKQRLKEEKRKERQEALEAKLEEKRKKEEEKRL
REEEKRLREEEKRIKAEKAEITRFFQKPKTPQAPKTLAGSCGKFAPFEIKEHMVLAPR
CRAALDQDLCDQLDQLLQQQSVASTFLSDLKSRLPLRSGPTRVCGHDTDIMNRDVVIV
ESSKVDGVSERKKFGRMKLLQFSENHRPAYWGTWNKKTAIIRPRNPWAQDKDLLDYEV
DSDDEWEEEEPGESLSHSEGDEDDDVGEDEDEDDGFFVPHGYLSEDEGVTEECADPEN
HKVHQKLKAKEWDELLAKGKRFRVLQPVHVGCVWASEAANCTSSDLKLLQQFTACLLD
VASPDEPEPGASRREKRDQHILAQLLPLLHGNVNGSKVIIHEFQEQCRRGLLTLPSPT
PHLQMPNLEDAVAVPSKARLKRLISENSAYEKRPNFRMCWYVHPEVLKSFGQECLPVP
CQWTYITTMPSAPREDSGSASTEGPGQSTPMLLKRKPAATMCITQFMKKRRYDGQVGS
GDMDGFQADTEEDEEDDTDCMIIDVPDVGSDVSEAPIPAPTLCK"
regulatory 4372..4377
/regulatory_class="polyA_signal_sequence"
/note="putative"
polyA_site 4387
/note="putative"
ORIGIN
1 ggaaaagcgg gagaaagatg agaaggagaa ggcggagaag cagcggctaa aggaggaaaa
61 acgcaaggag cggcaggaag ctctggaggc taaactggag gagaagagga agaaggagga
121 agagaagcgg ttacgggagg aagagaagcg gttacgggaa gaagagaagc gcattaaggc
181 agaaaaggca gagatcactc gattcttcca gaaaccgaag actccgcagg ctcccaagac
241 cctggccggt tcctgtggta agtttgcccc ctttgaaatc aaagaacaca tggtgctggc
301 tccacggtgc cgagctgcct tggatcaaga cctgtgcgat cagctggacc agctcctgca
361 gcagcagagt gtggcaagca ccttcctcag tgacctaaaa agccggctgc ccttgagatc
421 ggggcccacc cgggtctgtg gccatgacac agacatcatg aacagggatg tggtcattgt
481 ggagagcagc aaggtggacg gtgtgtctga aaggaagaag tttggccgca tgaagcttct
541 gcagttctca gagaaccacc ggccagcata ctgggggacg tggaacaaga agacagccat
601 catccgcccc cggaacccct gggcccagga caaagacctt cttgactatg aggtagacag
661 tgacgatgag tgggaagagg aggaacctgg ggagtctttg tcccacagtg agggggatga
721 ggatgacgat gtgggggaag atgaggatga ggacgatggc ttctttgtgc cccatgggta
781 cttatctgaa gatgaaggcg tgactgagga gtgtgcagac cctgagaacc acaaagtaca
841 ccagaagctg aaggccaagg agtgggatga gctcctagcc aagggcaagc gctttcgtgt
901 gctgcagcct gtgcacgtgg gatgtgtatg ggcatcagag gcagccaact gcacgagttc
961 cgacttgaag ctgctgcagc agttcactgc atgcctgctg gatgtggcat cccctgatga
1021 gccagaaccc ggggcctcca ggagggaaaa gagggaccag catatcctgg cccagttgct
1081 tccgctgcta catggcaatg tgaatgggag caaggtgatc atccatgaat tccaggagca
1141 atgccgcagg ggcctgctga cccttccaag tcccacccca cacctgcaga tgcccaactt
1201 ggaggatgct gttgctgtgc catccaaggc caggctgaag cgccttatct ctgagaactc
1261 tgcctatgag aagcggccca acttccgtat gtgctggtat gtgcacccag aggtgctcaa
1321 gagctttggc caggagtgcc tgccagtgcc ctgccagtgg acctacatca ccaccatgcc
1381 ctcagcaccc agggaagaca gtggcagtgc ttctactgag gggcctggcc agagcacacc
1441 tatgctactc aagcggaagc cagcggccac catgtgcatc acgcagttta tgaagaagcg
1501 gcgctatgat ggacaggttg ggtctgggga catggatggc ttccaggcag acacagaaga
1561 ggatgaagag gatgacacag actgtatgat catagatgtg ccagatgttg ggagtgacgt
1621 gtcagaagct cccatacctg ctcccacact ttgcaagtga caggtgtcaa gttgaaagac
1681 ctgggggaaa ttgacctagg tgacagggag tagtggagtg taggcacctg aagtgcaagg
1741 ttggtagtag gcatgttctg ggcagtggag gctgtgcttc ccctcagcct tgtagagctg
1801 ctgagggaga tgggaatgga gaccagcaac agcctgctcc ctgcagcatc tgactagcaa
1861 ccaccagagt gagcctcctg ctgactctca tgataaagag cactttgtcc tacattccta
1921 ggtctggagt ctgggggagg cctggacagc tacttccaaa ttgtaaagac tctgggtccg
1981 tgtgctaatc tgcccttctt aattgacaga tgcctgcttg ggccttaatc acagcacttg
2041 ctgtgggcaa acatctgcta tgaattgtgc tagggatgat gtggctgctg tgcaggccct
2101 gggcaaatgt ggacatgtat aaacatactc tacttgagcc ctctgtcttc tgtctcaact
2161 atcatattac actggtgcat gtccttccac ttgtcctggg cacagtccaa gcctgctagg
2221 gtgctggtag aaaagaaaca cccagggacc tcagaatgat actaaagcta cagttggttg
2281 gttgacttat aggacagatt catactgcca gcccttcaac ggccatggtg ctatggctct
2341 gatgaaacac tgggaggctg agtttaaata gcctgtttat ttggggttta taacttagga
2401 attacagctc catgctgcca gctgtctcca tccacagcct gtgtgcattc cacctgtgct
2461 gcactccaag atggcaccag agggctaagg ctccacacac cgcaagccag gacaagcctg
2521 tcccttgcag cccacagagg aggtaggacc ttgtctccaa ctctactgct actactgtcc
2581 ttcctattgc tggggactca gggaaaggaa tgggtttggg aacagcatga gactggagcc
2641 acagtgggcc aagcctgcat ttattcagga gagttgctcg atggctgcaa gcagctcagg
2701 cctcaagaca gattttgctg gctcagctcc tgctgccctt atatcttcca acactgaagc
2761 atcccaggag aaggtcaaca gggcagaggg tacctgcaag gcagatagaa tgtcacctag
2821 gatgcaatac ccctatgatg accctgtctc catgccacct tcaccaccat acagatccct
2881 tcagttggct ttttaaaggt accttcccca tctaacagaa tgaaaacaaa ggcactaaga
2941 caatgtaata aacccaccaa aggtgacagc acctccacac acaccctggc agtgggaatt
3001 tggtccaaaa tgctggaccc tcccattcag tgccaagggc atgatctcat gagcacagcc
3061 ccagctcacc agcccacact cattcaaggc cagggcctcg ttctcctcca gcttctgtcc
3121 accggaggcc ctcagctcaa agggcagcca gtcgttctgt agcgcctcgc gcacaaatcg
3181 gaagagcgcg gatagcttct cccgggcata gaaggtccct gcagggtaca gagcatgagc
3241 tagaggtggt gcagtatgat taccacccac cctgggctgg ggtggtcaca caccttgcag
3301 tagacagcca tctggcaggc gcacgcgcac aagggcatag gtatacttgc gaagctcccg
3361 ctgctcctct ttctcccgca tggctttggt cctgagtgag ctcagtcgct ccaccgcctc
3421 tgtcctgtgt ggcaaagagt atttattggt caggcctccc aagctaatgc cccatgaact
3481 gccctctcct cataagggcg tacctgagcc tttgctcccg cttcacctcc tcagctgtaa
3541 ggctgaagaa atctgagggg agttcaaaat gtgaggccag agccgagggg cggaagactc
3601 ggagctgccg atccagagtg gcccgcacag gctcggcatc caacagctgc tgcttgtgcc
3661 gcgccaggtt ctgcggctgc gcccgtgcat cctcacccag aacgtagaac tcctcctggc
3721 cctctgtaga ggcatcacag ctgtcttcgt gtcccatgtg ccaccgctgc cccctcccac
3781 ctgcctggcc gccctctcac cctgatccgg cacaggtagg gtgacctttt tgaaagccca
3841 tggcttcaaa gaactcgtgg cttccctcga gacagttgat gcgctcctga ggatgaggca
3901 cacacaggtc acccaggttg cagggccagg acccagcact gctgagattg aagccaagca
3961 gctcccactg gcccaacagc tgatgagtgg ttcttggaat gacgtccccc ataatggctt
4021 tgtggttaga gaggctacac caagcaagcc tcatgtctgc atttgtagga taaatttgga
4081 gggtgtcttc ccaaaagtat tcaaattaaa gagaggcctc tcgagggagc caggtctcca
4141 accctgagtt tcagtcgtag acccaacatt actgcgatct tgaaagtcaa gaccctatac
4201 tcaaaaaatc caaagaacag agctggtgaa atggctaggt aagtttaggt gtgacaccaa
4261 ggacaccaag tgtgacggct gtgttcccgg acccatgtgg tggaaggaga actactactc
4321 cacaggtttc ctttcctcca cacatgaagc ggctcatgca cctacctgta aattaaatgc
4381 atgaacg
//