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Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630225J18 product:Histone H1.3 (H1 VAR.4) (H1D), full insert sequence

GenBank: AK155411.1

FASTA Graphics 

LOCUS       AK155411                3825 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630225J18 product:Histone H1.3
            (H1 VAR.4) (H1D), full insert sequence.
ACCESSION   AK155411
VERSION     AK155411.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 3825)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N.,
            Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D.,
            Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2004) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
            Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
            Trust/MRC building Addenbrookes Hospital Cambridge) whose
            assistance we gratefully acknowledge.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=F630225J18.
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="NOD"
                     /db_xref="FANTOM_DB:F630225J18"
                     /db_xref="MGI:MGI:3555235"
                     /db_xref="taxon:10090"
                     /clone="F630225J18"
                     /cell_type="NOD-derived CD11c +ve dendritic cells"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
     CDS             59..724
                     /note="unnamed protein product; Histone H1.3 (H1 VAR.4)
                     (H1D) (UniProt|P43277, evidence: FASTY, 99.1%ID,
                     100%length, match=663);
                     putative"
                     /codon_start=1
                     /protein_id="BAE33250.1"
                     /translation="MSETAPAAPAAPAPVEKTPVKKKAKKTGAAAGKRKASGPPVSEL
                     ITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGILVQTKGTGA
                     SGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKAAKKTPKKAK
                     KPAAAAGAKKVSKSPKKVKAAKPKKAAKSPAKAKAPKAKASKPKASKPKATKAKKAAP
                     RKK"
ORIGIN      
        1 gaacaacctt ctctgactgt ttgtgcttac tttttgcttt actagtaaag cttaaaacat
       61 gtccgagacc gctcccgcgg cgcccgctgc ccctgcacct gtggagaaga cacctgtgaa
      121 gaagaaggcg aagaagaccg gcgccgctgc tgggaagcgc aaggcgtccg gacccccggt
      181 gtccgagctc atcaccaagg ctgtggccgc ctccaaggag cgcagcggcg tgtccctggc
      241 tgcgctcaag aaggcgctgg cggccgcggg gtacgatgtg gagaagaaca acagccgcat
      301 caagctcggg ctgaagagcc tggtgagcaa gggcatcctg gtacagacca agggcaccgg
      361 cgcctccggc tccttcaaac tcaacaagaa ggcggcttcc ggcgaggcca aacccaaggc
      421 taagaaggca ggcgcggcca aggccaagaa gcccgcggga gcagctaaga agcccaagaa
      481 ggcgactggt gctgccacac ccaaaaaggc ggccaagaag actccgaaga aggcgaagaa
      541 gcctgcggcg gctgccggcg ccaagaaagt ttctaagagt cccaagaagg tgaaggctgc
      601 taagcccaag aaggcagcaa agagtccagc caaggccaag gctcccaagg ctaaggcttc
      661 caagcctaaa gcttctaagc cgaaggccac caaggcaaag aaggctgccc ctcgcaagaa
      721 gtagagtggt gcgtcctgct ttgaaaatct caaacggctc ttttcagagc cacccacaac
      781 ctcattcaaa agagctgagc ctttttctgg ttttctcatg gtatgtccgc tgactctggc
      841 tatgtgttcc gaagcagatc aattctgtgc actttgttat atgggtacat ttaggagcat
      901 ctataaaatc tagttgagcg atagattgta tcattttcag ctctagccgg acttctgccc
      961 ggcagttttt ggcttctgtg tgtgctccgc acacgtgttc atattccaag agtttggcgg
     1021 gaagtccttt ctaatgtcgc ctaggcgtga taaggcttta ggggggttct ctaggaagct
     1081 actctcagat tagtggctac aggctggagc ctctgtttta agttttcctt tccaatccgt
     1141 ctacacaagg tggttttgag aattaaccaa tcaagccgta ctttcagtca tgggtgttgc
     1201 accaatcaga gattgtgata ttaagattta catttacgta ctgggacgct ggcgtttttt
     1261 ctctgtcccc gcccctttgt tcacctcaga gctctggaat tctgtcctaa gaatttttaa
     1321 ttgtgttttc cgagaaattg aaagcgctcc tatttcctcc aaacttagcc accttcgcag
     1381 tttttaggca ctgatcacat tgtcactata agtgtggaag cttttttaat accctgctgg
     1441 ttaggtttta gtaaggaaat tgaacaccac tgacagttct gcacattcct ttctcataca
     1501 ttgttctgag gttatctgtt ctcccttatt tggtcagtag accaattgta ggctgaggac
     1561 gtgaaagaaa aaccattttg gaaggtttgg tttgcagttt gacttcacaa atttgggcaa
     1621 acaaaacaag cacataaaaa cacaaactaa ccttaactgt ccttcaggaa gctgacccaa
     1681 atttggtgga tgccatttcc atttaattat tgaaagtatt aaagtttgtg tgtgtgtgta
     1741 tgtgtgtata tatatatttg tatgtatgta tttatttatt gaaagtgggg gccgcctttt
     1801 ctttcatcct gatgatgtaa gaattctaca gatgtttaat tgagcttctc ataggaagaa
     1861 attacatatc atttaaaaat atttttatat tatgtgtttg tgtgtgtgtg taggtcagag
     1921 gacaacctgc aacagtcagc tggggcttca ggtctggagg caagcacctg gtataagcca
     1981 tcaactctat cgtctacgtt tcaatctagc atttcattag aggagagtag gtaaaggatc
     2041 ttgtattcga gcctcaagag ctgtgttcaa tccagagatc catatgttgg aagaacacag
     2101 gctcctaaaa gatggctttt gacctccaca ggccattggt tgtgtaagtc accctctgct
     2161 cacatctagc ccagataagg taaagctata gtgataggca ctgaattact gaatttgatt
     2221 tcatgtaatt aaaaaaaata ttgtaaagga taggtaagtt cctattacat tttgaagtgc
     2281 ctgtgacatc agaattgtat gtgtaatcag atgtttgtag aatactctgc agttattgtg
     2341 tctctgaatg aagttcatgt gtatgagtgt tccttctgtc tgctgatgga gttgattatc
     2401 tgatgatgtt aaagaatgct caataaatac acaggtaaaa tatgatcata cttactactt
     2461 ttctcatccc ccacacttta agtccttaaa ggtcattatc ttaagaatgt gcgtttatgt
     2521 gtgtttacat ttaccacagc cattttcatt gactacacaa caaaaaggaa attttgggct
     2581 gttgaacaag tctccagtag gacaaaacct gatttaaatg ctcgtttcca tgttaatgcc
     2641 ctttaatccc aggcagatgc aggctcatct ttctcttgtt tccctctact ttatcaatat
     2701 atttggaaga atttccaaaa tctcatgaac tgaattagaa tattgtctga tattgattgg
     2761 atttatagat ttagaataaa tatataaaca tatagtaaaa tgtttatgaa cacatgggaa
     2821 tattcttctg accttgaact ctatggtcta atttcttacc atctccctta gctgctcaat
     2881 catgccactt caaatttggg gagtccataa aatggaaaaa tgtcagtatg tgaaatgtca
     2941 atattactat ttgtggatgg ataaaaattc aggaaaataa ggaaatgtca tatttgaaat
     3001 ttttttattt tttttatttt ttatttattt tttgtttttt ggagacaggg tttttctgtg
     3061 tagctagccc tggatatcct ggaactcact ctgttgtcca ggctagcctt gaactcagag
     3121 atccatctgc ctctgcctcc caaatgctgg gattaaaggc atgtgccacc actgcccagc
     3181 tatttttgaa tttacttgca tttctgctaa catttctgtg agataaagct cttggttact
     3241 catgaatcat cttttttctt attcattgtt gaaggtcatt gtcatggagc atactataac
     3301 aacaaaagac atcttagtta tatatagcaa aggagccttt ggaatacaaa ccattggtta
     3361 tttaaatact ttatttttca gtaataaaac actgatagtg tcataatttt aggtgtactg
     3421 catagtcttt attctaagac cacatttaaa cttcacactg taggaaggaa tatccataca
     3481 tgcactgctc atgatttgtt tagttacctg aagtctgtta tcacatgact gactggctca
     3541 ggtggaatgc ttcaggcctt tggtattttt taatccttct gcaacagagg caagataata
     3601 cgggaaaagc accaacatca taaatatcag aaaaaaagat ttgatatctg atcagagggg
     3661 cagcactaaa cttgtaaaga ctgactgctg actcaatttc tctaccctgg acaaccagat
     3721 aatcggttgg atagaaggag gaccagcctc tagaaagcta caggacttgc tgtcttttca
     3781 catcattgtg acatcacaaa cacaggttca agagtcaatt tctag
//
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Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the H1f3 gene (NM_145713.4).

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