LOCUS AK155411 3825 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
full-length enriched library, clone:F630225J18 product:Histone H1.3
(H1 VAR.4) (H1D), full insert sequence.
ACCESSION AK155411
VERSION AK155411.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 3825)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N.,
Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D.,
Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
Trust/MRC building Addenbrookes Hospital Cambridge) whose
assistance we gratefully acknowledge.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=F630225J18.
FEATURES Location/Qualifiers
source 1..3825
/organism="Mus musculus"
/mol_type="mRNA"
/strain="NOD"
/db_xref="FANTOM_DB:F630225J18"
/db_xref="MGI:MGI:3555235"
/db_xref="taxon:10090"
/clone="F630225J18"
/cell_type="NOD-derived CD11c +ve dendritic cells"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
CDS 59..724
/note="unnamed protein product; Histone H1.3 (H1 VAR.4)
(H1D) (UniProt|P43277, evidence: FASTY, 99.1%ID,
100%length, match=663);
putative"
/codon_start=1
/protein_id="BAE33250.1"
/translation="MSETAPAAPAAPAPVEKTPVKKKAKKTGAAAGKRKASGPPVSEL
ITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGILVQTKGTGA
SGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKAAKKTPKKAK
KPAAAAGAKKVSKSPKKVKAAKPKKAAKSPAKAKAPKAKASKPKASKPKATKAKKAAP
RKK"
ORIGIN
1 gaacaacctt ctctgactgt ttgtgcttac tttttgcttt actagtaaag cttaaaacat
61 gtccgagacc gctcccgcgg cgcccgctgc ccctgcacct gtggagaaga cacctgtgaa
121 gaagaaggcg aagaagaccg gcgccgctgc tgggaagcgc aaggcgtccg gacccccggt
181 gtccgagctc atcaccaagg ctgtggccgc ctccaaggag cgcagcggcg tgtccctggc
241 tgcgctcaag aaggcgctgg cggccgcggg gtacgatgtg gagaagaaca acagccgcat
301 caagctcggg ctgaagagcc tggtgagcaa gggcatcctg gtacagacca agggcaccgg
361 cgcctccggc tccttcaaac tcaacaagaa ggcggcttcc ggcgaggcca aacccaaggc
421 taagaaggca ggcgcggcca aggccaagaa gcccgcggga gcagctaaga agcccaagaa
481 ggcgactggt gctgccacac ccaaaaaggc ggccaagaag actccgaaga aggcgaagaa
541 gcctgcggcg gctgccggcg ccaagaaagt ttctaagagt cccaagaagg tgaaggctgc
601 taagcccaag aaggcagcaa agagtccagc caaggccaag gctcccaagg ctaaggcttc
661 caagcctaaa gcttctaagc cgaaggccac caaggcaaag aaggctgccc ctcgcaagaa
721 gtagagtggt gcgtcctgct ttgaaaatct caaacggctc ttttcagagc cacccacaac
781 ctcattcaaa agagctgagc ctttttctgg ttttctcatg gtatgtccgc tgactctggc
841 tatgtgttcc gaagcagatc aattctgtgc actttgttat atgggtacat ttaggagcat
901 ctataaaatc tagttgagcg atagattgta tcattttcag ctctagccgg acttctgccc
961 ggcagttttt ggcttctgtg tgtgctccgc acacgtgttc atattccaag agtttggcgg
1021 gaagtccttt ctaatgtcgc ctaggcgtga taaggcttta ggggggttct ctaggaagct
1081 actctcagat tagtggctac aggctggagc ctctgtttta agttttcctt tccaatccgt
1141 ctacacaagg tggttttgag aattaaccaa tcaagccgta ctttcagtca tgggtgttgc
1201 accaatcaga gattgtgata ttaagattta catttacgta ctgggacgct ggcgtttttt
1261 ctctgtcccc gcccctttgt tcacctcaga gctctggaat tctgtcctaa gaatttttaa
1321 ttgtgttttc cgagaaattg aaagcgctcc tatttcctcc aaacttagcc accttcgcag
1381 tttttaggca ctgatcacat tgtcactata agtgtggaag cttttttaat accctgctgg
1441 ttaggtttta gtaaggaaat tgaacaccac tgacagttct gcacattcct ttctcataca
1501 ttgttctgag gttatctgtt ctcccttatt tggtcagtag accaattgta ggctgaggac
1561 gtgaaagaaa aaccattttg gaaggtttgg tttgcagttt gacttcacaa atttgggcaa
1621 acaaaacaag cacataaaaa cacaaactaa ccttaactgt ccttcaggaa gctgacccaa
1681 atttggtgga tgccatttcc atttaattat tgaaagtatt aaagtttgtg tgtgtgtgta
1741 tgtgtgtata tatatatttg tatgtatgta tttatttatt gaaagtgggg gccgcctttt
1801 ctttcatcct gatgatgtaa gaattctaca gatgtttaat tgagcttctc ataggaagaa
1861 attacatatc atttaaaaat atttttatat tatgtgtttg tgtgtgtgtg taggtcagag
1921 gacaacctgc aacagtcagc tggggcttca ggtctggagg caagcacctg gtataagcca
1981 tcaactctat cgtctacgtt tcaatctagc atttcattag aggagagtag gtaaaggatc
2041 ttgtattcga gcctcaagag ctgtgttcaa tccagagatc catatgttgg aagaacacag
2101 gctcctaaaa gatggctttt gacctccaca ggccattggt tgtgtaagtc accctctgct
2161 cacatctagc ccagataagg taaagctata gtgataggca ctgaattact gaatttgatt
2221 tcatgtaatt aaaaaaaata ttgtaaagga taggtaagtt cctattacat tttgaagtgc
2281 ctgtgacatc agaattgtat gtgtaatcag atgtttgtag aatactctgc agttattgtg
2341 tctctgaatg aagttcatgt gtatgagtgt tccttctgtc tgctgatgga gttgattatc
2401 tgatgatgtt aaagaatgct caataaatac acaggtaaaa tatgatcata cttactactt
2461 ttctcatccc ccacacttta agtccttaaa ggtcattatc ttaagaatgt gcgtttatgt
2521 gtgtttacat ttaccacagc cattttcatt gactacacaa caaaaaggaa attttgggct
2581 gttgaacaag tctccagtag gacaaaacct gatttaaatg ctcgtttcca tgttaatgcc
2641 ctttaatccc aggcagatgc aggctcatct ttctcttgtt tccctctact ttatcaatat
2701 atttggaaga atttccaaaa tctcatgaac tgaattagaa tattgtctga tattgattgg
2761 atttatagat ttagaataaa tatataaaca tatagtaaaa tgtttatgaa cacatgggaa
2821 tattcttctg accttgaact ctatggtcta atttcttacc atctccctta gctgctcaat
2881 catgccactt caaatttggg gagtccataa aatggaaaaa tgtcagtatg tgaaatgtca
2941 atattactat ttgtggatgg ataaaaattc aggaaaataa ggaaatgtca tatttgaaat
3001 ttttttattt tttttatttt ttatttattt tttgtttttt ggagacaggg tttttctgtg
3061 tagctagccc tggatatcct ggaactcact ctgttgtcca ggctagcctt gaactcagag
3121 atccatctgc ctctgcctcc caaatgctgg gattaaaggc atgtgccacc actgcccagc
3181 tatttttgaa tttacttgca tttctgctaa catttctgtg agataaagct cttggttact
3241 catgaatcat cttttttctt attcattgtt gaaggtcatt gtcatggagc atactataac
3301 aacaaaagac atcttagtta tatatagcaa aggagccttt ggaatacaaa ccattggtta
3361 tttaaatact ttatttttca gtaataaaac actgatagtg tcataatttt aggtgtactg
3421 catagtcttt attctaagac cacatttaaa cttcacactg taggaaggaa tatccataca
3481 tgcactgctc atgatttgtt tagttacctg aagtctgtta tcacatgact gactggctca
3541 ggtggaatgc ttcaggcctt tggtattttt taatccttct gcaacagagg caagataata
3601 cgggaaaagc accaacatca taaatatcag aaaaaaagat ttgatatctg atcagagggg
3661 cagcactaaa cttgtaaaga ctgactgctg actcaatttc tctaccctgg acaaccagat
3721 aatcggttgg atagaaggag gaccagcctc tagaaagcta caggacttgc tgtcttttca
3781 catcattgtg acatcacaaa cacaggttca agagtcaatt tctag
//