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GenBank: ABRTTC000000000.1
LOCUS ABRTTC010000000 37 rc DNA linear BCT 18-APR-2024 DEFINITION Salmonella enterica subsp. enterica serovar Saintpaul strain SENASICA_Sa_BQ63, whole genome shotgun sequencing project. ACCESSION ABRTTC000000000 VERSION ABRTTC000000000.1 DBLINK BioProject: PRJNA480281 BioSample: SAMN40973939 Sequence Read Archive: SRR28724137 KEYWORDS WGS. SOURCE Salmonella enterica subsp. enterica serovar Saintpaul ORGANISM Salmonella enterica subsp. enterica serovar Saintpaul Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 37) CONSRTM GenomeTrakr network: Whole genome sequencing for foodborne pathogen traceback TITLE Direct Submission JOURNAL Submitted (17-APR-2024) Center for Food Safety and Applied Nutrition, US Food and Drug Administration, 5100 Paint Branch Pkwy, College Park, MD, USA COMMENT The Salmonella enterica subsp. enterica serovar Saintpaul whole genome shotgun (WGS) project has the project accession ABRTTC000000000. This version of the project (01) has the accession number ABRTTC010000000, and consists of sequences ABRTTC010000001-ABRTTC010000037. The annotation was added by the assembly submitters using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about stand-alone PGAP can be found here: https://github.com/ncbi/pgap/ This draft WGS assembly was generated by running SKESA to generate a de-novo assembly. The de-novo assembly was then concatenated with contigs generated using a guided assembler using antimicrobial resistance genes as baits to comprehensively catalog the set of resistance genes in the isolate. Note, some parts of the contigs derived from the guided assembler may overlap de-novo contigs, and other guided assembler contigs. De-novo contigs can be differentiated from guided assembler contigs by their names , which include either 'denovo' or 'guided'. ##Genome-Assembly-Data-START## Assembly Date :: 17-APR-2024 Assembly Method :: SKESA v. 2.2 Assembly Name :: PDT002140562.1 Long Assembly Name :: NCBI Pathogen Detection Assembly PDT002140562.1 Genome Coverage :: 157x Sequencing Technology :: ILLUMINA ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Date :: 04/18/2024 03:35:52 Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Provider :: NCBI Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Annotation Software revision :: 2021-01-11.build5132 Genes (total) :: 4,797 CDSs (total) :: 4,703 Genes (coding) :: 4,625 CDSs (with protein) :: 4,625 Genes (RNA) :: 94 rRNAs :: 4, 2, 3 (5S, 16S, 23S) complete rRNAs :: 4 (5S) partial rRNAs :: 2, 3 (16S, 23S) tRNAs :: 74 ncRNAs :: 11 Pseudo Genes (total) :: 78 CDSs (without protein) :: 78 Pseudo Genes (ambiguous residues) :: 0 of 78 Pseudo Genes (frameshifted) :: 25 of 78 Pseudo Genes (incomplete) :: 49 of 78 Pseudo Genes (internal stop) :: 21 of 78 Pseudo Genes (multiple problems) :: 14 of 78 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..37 /organism="Salmonella enterica subsp. enterica serovar Saintpaul" /mol_type="genomic DNA" /strain="SENASICA_Sa_BQ63" /serovar="Saintpaul" /isolation_source="Poultry" /sub_species="enterica" /db_xref="taxon:90105" /geo_loc_name="Mexico" /collection_date="2023-08-06" /collected_by="INSP-FMVZ" WGS ABRTTC010000001-ABRTTC010000037 //
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