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GenBank: AAEWXB000000000.1
LOCUS AAEWXB010000000 67 rc DNA linear BCT 10-JUN-2019 DEFINITION Salmonella enterica subsp. enterica serovar Infantis strain MOD1_Per71, whole genome shotgun sequencing project. ACCESSION AAEWXB000000000 VERSION AAEWXB000000000.1 DBLINK BioProject: PRJNA378379 BioSample: SAMN07246713 Sequence Read Archive: SRR7456254 KEYWORDS WGS; GMI. SOURCE Salmonella enterica subsp. enterica serovar Infantis ORGANISM Salmonella enterica subsp. enterica serovar Infantis Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 67) CONSRTM GenomeTrakr network: Whole genome sequencing for foodborne pathogen traceback TITLE Direct Submission JOURNAL Submitted (29-JUN-2018) Center for Food Safety and Applied Nutrition, US Food and Drug Administraion, 5100 Paint Branch Pkwy, College Park, MD, USA COMMENT The Salmonella enterica subsp. enterica serovar Infantis whole genome shotgun (WGS) project has the project accession AAEWXB000000000. This version of the project (01) has the accession number AAEWXB010000000, and consists of sequences AAEWXB010000001-AAEWXB010000067. This draft WGS assembly was generated by running SKESA to generate a de-novo assembly. The de-novo assembly was then concatenated with contigs generated using a guided assembler using antimicrobial resistance genes as baits to comprehensively catalog the set of resistance genes in the isolate. Note, some parts of the contigs derived from the guided assembler may overlap de-novo contigs, and other guided assembler contigs. De-novo contigs can be differentiated from guided assembler contigs by their names , which include either 'denovo' or 'guided'. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 29-JUN-2018 Assembly Method :: SKESA v. 2.2 Assembly Name :: PDT000338764.1 Long Assembly Name :: NCBI Pathogen Detection Assembly PDT000338764.1 Genome Coverage :: 212x Sequencing Technology :: ILLUMINA ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Date :: 06/30/2018 01:03:12 Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Provider :: NCBI Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Annotation Software revision :: 4.5 Genes (total) :: 5,182 CDS (total) :: 5,077 Genes (coding) :: 4,851 CDS (coding) :: 4,851 Genes (RNA) :: 105 rRNAs :: 8, 3, 6 (5S, 16S, 23S) complete rRNAs :: 6 (5S) partial rRNAs :: 2, 3, 6 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 13 Pseudo Genes (total) :: 226 Pseudo Genes (ambiguous residues) :: 0 of 226 Pseudo Genes (frameshifted) :: 120 of 226 Pseudo Genes (incomplete) :: 110 of 226 Pseudo Genes (internal stop) :: 73 of 226 Pseudo Genes (multiple problems) :: 66 of 226 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..67 /organism="Salmonella enterica subsp. enterica serovar Infantis" /mol_type="genomic DNA" /strain="MOD1_Per71" /serovar="Infantis" /isolation_source="biological fluid or tissue" /host="Homo sapiens" /sub_species="enterica" /db_xref="taxon:595" /geo_loc_name="Peru" /collection_date="2010-03-21" /collected_by="MOD1" WGS AAEWXB010000001-AAEWXB010000067 //
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