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Arabidopsis thaliana Uncharacterized protein family (UPF0497) (AT2G37200), mRNA

NCBI Reference Sequence: NM_129276.5

FASTA Graphics 

LOCUS       NM_129276                861 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Uncharacterized protein family (UPF0497)
            (AT2G37200), mRNA.
ACCESSION   NM_129276
VERSION     NM_129276.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 861)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 861)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 861)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_129276.4.
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..861
                     /locus_tag="AT2G37200"
                     /gene_synonym="CASP-like protein 5A1; CASPL5A1; T2N18.4;
                     T2N18_4"
                     /db_xref="Araport:AT2G37200"
                     /db_xref="GeneID:818297"
                     /db_xref="TAIR:AT2G37200"
     CDS             58..600
                     /locus_tag="AT2G37200"
                     /gene_synonym="CASP-like protein 5A1; CASPL5A1; T2N18.4;
                     T2N18_4"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP622303.1,INSD:ES130799.1,INSD:ES076287.1,
                     INSD:DR372370.1,INSD:EL083336.1,INSD:DR291507.1,
                     INSD:EL972828.1,INSD:ES150797.1,INSD:EL224481.1,
                     INSD:DR291500.1,INSD:ES024359.1,INSD:EH875557.1,
                     INSD:ES033179.1,INSD:DR291503.1,INSD:EH835885.1,
                     INSD:DR291502.1,INSD:ES004749.1,INSD:BP672038.1,
                     INSD:DR291506.1,INSD:ES004674.1,INSD:DR291508.1,
                     INSD:DR291504.1,INSD:EH927564.1,INSD:ES215432.1,
                     INSD:DR291501.1,INSD:BP623553.1,INSD:EL267933.1,
                     INSD:EL327558.1,INSD:BP626448.1,INSD:ES115912.1,
                     INSD:AU228494.1,INSD:BP643794.1,INSD:EL133004.1,
                     INSD:ES105119.1,INSD:DR291505.1,INSD:EL132422.1,
                     INSD:ES009948.1,INSD:ES161561.1,INSD:EG451387.1,
                     INSD:ES140991.1,INSD:ES042379.1,INSD:AU237429.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX821221.1,INSD:BT010678.1,INSD:BT010966.1,
                     INSD:AK228932.1"
                     /note="Uncharacterised protein family (UPF0497); CONTAINS
                     InterPro DOMAIN/s: Uncharacterised protein family UPF0497,
                     trans-membrane plant (InterPro:IPR006702); BEST
                     Arabidopsis thaliana protein match is: Uncharacterised
                     protein family (UPF0497) (TAIR:AT2G28370.1); Has 205 Blast
                     hits to 205 proteins in 15 species: Archae - 0; Bacteria -
                     0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0;
                     Other Eukaryotes - 0 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Uncharacterized protein family (UPF0497)"
                     /protein_id="NP_181257.2"
                     /db_xref="Araport:AT2G37200"
                     /db_xref="GeneID:818297"
                     /db_xref="TAIR:AT2G37200"
                     /translation="MMNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGL
                     ILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLVRR
                     SLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLINDLGQCNVNHCTRFETATAMAF
                     ISWFAVSPSFILNFWSLATH"
ORIGIN      
        1 cccaaacgtc tttttcagtt gctctttctt ggtgggaact gtttgagctc gagttctatg
       61 atgaacgtga gccggccggc gattcacccg gttgatgctc ttccggtggc tcctactgcc
      121 ggagcgatcg atagaccacc agtgaggatg aaggatgtgc aaggcatgcc cggaaccacc
      181 ggcggtctca tcctccgtct ctctcagttc gttcccgctc ttatctccgt ctccgtcatg
      241 gtcactacct ccgacttccg ctccgccacc gcattctgtt gcttggttct tgcggttagc
      301 ctgcaaagcc tgtggagctt gtctcttttt attatcgatg cttatgctct tctggtgaga
      361 agaagccttc gaaatcactc cgttgttcag tgtttcacta ttggagatgg agtcacatcg
      421 acgctcacgt ttgcagctgc atctgcttct gctggcataa ctgtactcat caacgatctt
      481 ggacaatgta acgtgaatca ctgcacaagg tttgagactg ccacagcaat ggccttcatc
      541 agctggtttg ctgtgtctcc ttcctttatt ctcaacttct ggtccttagc cacccactaa
      601 atatatagca cacaagttga gttcagagaa atccatcttt ctagtataat gtaaataaag
      661 ggtggagtat aatgtatcgc ttgattagca aatgttttga gacagatatt atattggaaa
      721 atcatagtac aagaaaacaa gctcgattct gagtcatcaa gtttatatca acaaaatagt
      781 gattgatgtg gaatcttgag gcaagtcagg agtccgacga tgagtaacca acaggaaagt
      841 tagatatgtg acgaaatcaa t
//
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