LOCUS NM_129276 861 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Uncharacterized protein family (UPF0497)
(AT2G37200), mRNA.
ACCESSION NM_129276
VERSION NM_129276.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 861)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 861)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 861)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 861)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_129276.4.
FEATURES Location/Qualifiers
source 1..861
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..861
/locus_tag="AT2G37200"
/gene_synonym="CASP-like protein 5A1; CASPL5A1; T2N18.4;
T2N18_4"
/db_xref="Araport:AT2G37200"
/db_xref="GeneID:818297"
/db_xref="TAIR:AT2G37200"
CDS 58..600
/locus_tag="AT2G37200"
/gene_synonym="CASP-like protein 5A1; CASPL5A1; T2N18.4;
T2N18_4"
/inference="Similar to RNA sequence,
EST:INSD:BP622303.1,INSD:ES130799.1,INSD:ES076287.1,
INSD:DR372370.1,INSD:EL083336.1,INSD:DR291507.1,
INSD:EL972828.1,INSD:ES150797.1,INSD:EL224481.1,
INSD:DR291500.1,INSD:ES024359.1,INSD:EH875557.1,
INSD:ES033179.1,INSD:DR291503.1,INSD:EH835885.1,
INSD:DR291502.1,INSD:ES004749.1,INSD:BP672038.1,
INSD:DR291506.1,INSD:ES004674.1,INSD:DR291508.1,
INSD:DR291504.1,INSD:EH927564.1,INSD:ES215432.1,
INSD:DR291501.1,INSD:BP623553.1,INSD:EL267933.1,
INSD:EL327558.1,INSD:BP626448.1,INSD:ES115912.1,
INSD:AU228494.1,INSD:BP643794.1,INSD:EL133004.1,
INSD:ES105119.1,INSD:DR291505.1,INSD:EL132422.1,
INSD:ES009948.1,INSD:ES161561.1,INSD:EG451387.1,
INSD:ES140991.1,INSD:ES042379.1,INSD:AU237429.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX821221.1,INSD:BT010678.1,INSD:BT010966.1,
INSD:AK228932.1"
/note="Uncharacterised protein family (UPF0497); CONTAINS
InterPro DOMAIN/s: Uncharacterised protein family UPF0497,
trans-membrane plant (InterPro:IPR006702); BEST
Arabidopsis thaliana protein match is: Uncharacterised
protein family (UPF0497) (TAIR:AT2G28370.1); Has 205 Blast
hits to 205 proteins in 15 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink)."
/codon_start=1
/product="Uncharacterized protein family (UPF0497)"
/protein_id="NP_181257.2"
/db_xref="Araport:AT2G37200"
/db_xref="GeneID:818297"
/db_xref="TAIR:AT2G37200"
/translation="MMNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGL
ILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLVRR
SLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLINDLGQCNVNHCTRFETATAMAF
ISWFAVSPSFILNFWSLATH"
ORIGIN
1 cccaaacgtc tttttcagtt gctctttctt ggtgggaact gtttgagctc gagttctatg
61 atgaacgtga gccggccggc gattcacccg gttgatgctc ttccggtggc tcctactgcc
121 ggagcgatcg atagaccacc agtgaggatg aaggatgtgc aaggcatgcc cggaaccacc
181 ggcggtctca tcctccgtct ctctcagttc gttcccgctc ttatctccgt ctccgtcatg
241 gtcactacct ccgacttccg ctccgccacc gcattctgtt gcttggttct tgcggttagc
301 ctgcaaagcc tgtggagctt gtctcttttt attatcgatg cttatgctct tctggtgaga
361 agaagccttc gaaatcactc cgttgttcag tgtttcacta ttggagatgg agtcacatcg
421 acgctcacgt ttgcagctgc atctgcttct gctggcataa ctgtactcat caacgatctt
481 ggacaatgta acgtgaatca ctgcacaagg tttgagactg ccacagcaat ggccttcatc
541 agctggtttg ctgtgtctcc ttcctttatt ctcaacttct ggtccttagc cacccactaa
601 atatatagca cacaagttga gttcagagaa atccatcttt ctagtataat gtaaataaag
661 ggtggagtat aatgtatcgc ttgattagca aatgttttga gacagatatt atattggaaa
721 atcatagtac aagaaaacaa gctcgattct gagtcatcaa gtttatatca acaaaatagt
781 gattgatgtg gaatcttgag gcaagtcagg agtccgacga tgagtaacca acaggaaagt
841 tagatatgtg acgaaatcaa t
//