LOCUS NM_123128 1442 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana SGNH hydrolase-type esterase superfamily
protein (AT5G37690), mRNA.
ACCESSION NM_123128
VERSION NM_123128.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1442)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1442)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1442)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1442)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_123128.2.
FEATURES Location/Qualifiers
source 1..1442
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1442
/locus_tag="AT5G37690"
/gene_synonym="AT5G37700; K12B20.140; K12B20_140"
/db_xref="Araport:AT5G37690"
/db_xref="GeneID:833748"
/db_xref="TAIR:AT5G37690"
CDS 115..1185
/locus_tag="AT5G37690"
/gene_synonym="AT5G37700; K12B20.140; K12B20_140"
/inference="Similar to RNA sequence,
EST:INSD:H37314.1,INSD:AA651288.1,INSD:AV538641.1,
INSD:AV541667.1,INSD:AV550944.1,INSD:EL071133.1,
INSD:AI995013.1,INSD:DR380646.1,INSD:DR275264.1"
/inference="similar to RNA sequence, mRNA:INSD:AY085078.1"
/note="SGNH hydrolase-type esterase superfamily protein;
FUNCTIONS IN: lipase activity, hydrolase activity, acting
on ester bonds; INVOLVED IN: lipid metabolic process;
LOCATED IN: endomembrane system; EXPRESSED IN: shoot,
hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL
(InterPro:IPR001087), Esterase, SGNH hydrolase-type
(InterPro:IPR013830); BEST Arabidopsis thaliana protein
match is: GDSL-like Lipase/Acylhydrolase superfamily
protein (TAIR:AT1G74460.1); Has 3491 Blast hits to 3453
proteins in 233 species: Archae - 0; Bacteria - 356;
Metazoa - 0; Fungi - 50; Plants - 3074; Viruses - 0; Other
Eukaryotes - 11 (source: NCBI BLink)."
/codon_start=1
/product="SGNH hydrolase-type esterase superfamily
protein"
/protein_id="NP_198585.2"
/db_xref="GeneID:833748"
/db_xref="TAIR:AT5G37690"
/db_xref="Araport:AT5G37690"
/translation="MMILRLALAIVISTYATAQPASTSSLVTYIFGDSLTEVGNNNFL
QYSLARADFPYYGVDFSGGKATGRFTNGRTIGDIISTKLGILSPPPYLSLSQNDDAFL
SGINYASGGAGILNETGIYFIQRLTFNDQINCFKKTKEVIRAKIGDGAANKHVNDAMY
FIGLGSNDYVNNFLQPFMADGQQYTHDEFVELLTSTLHNQLTTIYKLGARKVIFHGLG
PLGCIPSQRVKSKTRMCLNRVNEWVLEFNSRTKKLLIDLNKRLPGAKFSFADTYPAVL
DLINNPTHYGFKIANTSCCNVDTSVGGLCLPNSKMCKNRQDFVFWDAFHPSDSANQIL
ADHLFSSLLSSSSPSPAPKPRQ"
ORIGIN
1 ataattacaa atgagttcat catcactata tatattcaac attcgcttac ataacattct
61 gtccaaatta gagaataagt aactcaagaa ggagtgaaat caacacaaaa cacaatgatg
121 atccttaggc tggctctagc catcgtcatc tccacctatg caaccgcaca accagcatca
181 acatcgtcgc ttgtaaccta tatattcggc gactcgctaa ccgaagttgg taacaacaat
241 ttcttgcaat attcgctagc aagagcagac tttccatatt atggagttga tttctccggt
301 ggtaaagcta ccggaagatt caccaacggt agaactatcg gcgatatcat atctacgaag
361 ctcgggattc tatcgccacc accatatcta tcgttatcac aaaacgacga tgcatttctc
421 agtggtataa attacgcatc tggaggagct ggaattctca atgaaactgg catttacttc
481 atccaaaggc taactttcaa tgatcaaata aattgtttca agaaaactaa agaagttatt
541 agggcgaaaa tcggagatgg agctgcgaac aagcatgtaa atgatgccat gtacttcatt
601 ggtttgggaa gcaacgatta tgtaaacaat ttcttgcagc catttatggc agatgggcag
661 caatatacac atgacgagtt tgtcgaactc ttgacctcaa ccctacacaa tcagcttacg
721 acaatataca aattaggagc gaggaaggta atatttcatg ggttaggccc attgggctgt
781 atcccatcac agagagtgaa gtcaaagaca cgcatgtgcc tgaaccgtgt caacgaatgg
841 gtattggaat tcaattcaag aacgaagaag ctattaatag atctcaacaa acgcctcccc
901 ggagctaaat tctctttcgc agacacttat cccgccgttc tcgatctcat caacaatccc
961 actcactacg gatttaagat agcaaacacg tcatgttgca atgtggacac aagtgttgga
1021 ggtctttgtc ttcccaattc caagatgtgt aaaaaccgtc aagactttgt cttctgggac
1081 gcatttcatc cgtccgattc ggctaatcaa atcctagccg atcatctttt ctcttctctt
1141 ctttcttcct cttctccttc tcctgctcct aaaccacgtc aatagtttag catttacaaa
1201 aataaaaaca gttaaccaat ttttgttaaa ttggacctac ttgctatata catgtgtaac
1261 taattttatg ttcttgatgt aaccatcagg acaaatatgt gtgttttgtt acacaagtat
1321 tatatattat aagataatta tggtttgtat gtatcatgaa cacattgtta tatatacaca
1381 tatattcgtg tttagtgttt ctagacatgt gttataaata aacatctaca ccaattttgg
1441 tc
//