U.S. flag

An official website of the United States government

Arabidopsis thaliana SGNH hydrolase-type esterase superfamily protein (AT5G37690), mRNA

NCBI Reference Sequence: NM_123128.3

FASTA Graphics 

LOCUS       NM_123128               1442 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana SGNH hydrolase-type esterase superfamily
            protein (AT5G37690), mRNA.
ACCESSION   NM_123128
VERSION     NM_123128.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1442)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1442)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1442)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1442)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_123128.2.
FEATURES             Location/Qualifiers
     source          1..1442
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1442
                     /locus_tag="AT5G37690"
                     /gene_synonym="AT5G37700; K12B20.140; K12B20_140"
                     /db_xref="Araport:AT5G37690"
                     /db_xref="GeneID:833748"
                     /db_xref="TAIR:AT5G37690"
     CDS             115..1185
                     /locus_tag="AT5G37690"
                     /gene_synonym="AT5G37700; K12B20.140; K12B20_140"
                     /inference="Similar to RNA sequence,
                     EST:INSD:H37314.1,INSD:AA651288.1,INSD:AV538641.1,
                     INSD:AV541667.1,INSD:AV550944.1,INSD:EL071133.1,
                     INSD:AI995013.1,INSD:DR380646.1,INSD:DR275264.1"
                     /inference="similar to RNA sequence, mRNA:INSD:AY085078.1"
                     /note="SGNH hydrolase-type esterase superfamily protein;
                     FUNCTIONS IN: lipase activity, hydrolase activity, acting
                     on ester bonds; INVOLVED IN: lipid metabolic process;
                     LOCATED IN: endomembrane system; EXPRESSED IN: shoot,
                     hypocotyl, root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL
                     (InterPro:IPR001087), Esterase, SGNH hydrolase-type
                     (InterPro:IPR013830); BEST Arabidopsis thaliana protein
                     match is: GDSL-like Lipase/Acylhydrolase superfamily
                     protein (TAIR:AT1G74460.1); Has 3491 Blast hits to 3453
                     proteins in 233 species: Archae - 0; Bacteria - 356;
                     Metazoa - 0; Fungi - 50; Plants - 3074; Viruses - 0; Other
                     Eukaryotes - 11 (source: NCBI BLink)."
                     /codon_start=1
                     /product="SGNH hydrolase-type esterase superfamily
                     protein"
                     /protein_id="NP_198585.2"
                     /db_xref="GeneID:833748"
                     /db_xref="TAIR:AT5G37690"
                     /db_xref="Araport:AT5G37690"
                     /translation="MMILRLALAIVISTYATAQPASTSSLVTYIFGDSLTEVGNNNFL
                     QYSLARADFPYYGVDFSGGKATGRFTNGRTIGDIISTKLGILSPPPYLSLSQNDDAFL
                     SGINYASGGAGILNETGIYFIQRLTFNDQINCFKKTKEVIRAKIGDGAANKHVNDAMY
                     FIGLGSNDYVNNFLQPFMADGQQYTHDEFVELLTSTLHNQLTTIYKLGARKVIFHGLG
                     PLGCIPSQRVKSKTRMCLNRVNEWVLEFNSRTKKLLIDLNKRLPGAKFSFADTYPAVL
                     DLINNPTHYGFKIANTSCCNVDTSVGGLCLPNSKMCKNRQDFVFWDAFHPSDSANQIL
                     ADHLFSSLLSSSSPSPAPKPRQ"
ORIGIN      
        1 ataattacaa atgagttcat catcactata tatattcaac attcgcttac ataacattct
       61 gtccaaatta gagaataagt aactcaagaa ggagtgaaat caacacaaaa cacaatgatg
      121 atccttaggc tggctctagc catcgtcatc tccacctatg caaccgcaca accagcatca
      181 acatcgtcgc ttgtaaccta tatattcggc gactcgctaa ccgaagttgg taacaacaat
      241 ttcttgcaat attcgctagc aagagcagac tttccatatt atggagttga tttctccggt
      301 ggtaaagcta ccggaagatt caccaacggt agaactatcg gcgatatcat atctacgaag
      361 ctcgggattc tatcgccacc accatatcta tcgttatcac aaaacgacga tgcatttctc
      421 agtggtataa attacgcatc tggaggagct ggaattctca atgaaactgg catttacttc
      481 atccaaaggc taactttcaa tgatcaaata aattgtttca agaaaactaa agaagttatt
      541 agggcgaaaa tcggagatgg agctgcgaac aagcatgtaa atgatgccat gtacttcatt
      601 ggtttgggaa gcaacgatta tgtaaacaat ttcttgcagc catttatggc agatgggcag
      661 caatatacac atgacgagtt tgtcgaactc ttgacctcaa ccctacacaa tcagcttacg
      721 acaatataca aattaggagc gaggaaggta atatttcatg ggttaggccc attgggctgt
      781 atcccatcac agagagtgaa gtcaaagaca cgcatgtgcc tgaaccgtgt caacgaatgg
      841 gtattggaat tcaattcaag aacgaagaag ctattaatag atctcaacaa acgcctcccc
      901 ggagctaaat tctctttcgc agacacttat cccgccgttc tcgatctcat caacaatccc
      961 actcactacg gatttaagat agcaaacacg tcatgttgca atgtggacac aagtgttgga
     1021 ggtctttgtc ttcccaattc caagatgtgt aaaaaccgtc aagactttgt cttctgggac
     1081 gcatttcatc cgtccgattc ggctaatcaa atcctagccg atcatctttt ctcttctctt
     1141 ctttcttcct cttctccttc tcctgctcct aaaccacgtc aatagtttag catttacaaa
     1201 aataaaaaca gttaaccaat ttttgttaaa ttggacctac ttgctatata catgtgtaac
     1261 taattttatg ttcttgatgt aaccatcagg acaaatatgt gtgttttgtt acacaagtat
     1321 tatatattat aagataatta tggtttgtat gtatcatgaa cacattgtta tatatacaca
     1381 tatattcgtg tttagtgttt ctagacatgt gttataaata aacatctaca ccaattttgg
     1441 tc
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

  • RefSeq alternative splicing
    See the other reference mRNA sequence splice variant for the AT5G37690 gene (NM_001344214.1).
  • RefSeq protein product
    See the reference protein sequence for SGNH hydrolase-type esterase superfamily protein (NP_198585.2).

More about the AT5G37690 gene

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.