LOCUS NM_123009 1862 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana serine carboxypeptidase-like 1 (scpl1), mRNA.
ACCESSION NM_123009
VERSION NM_123009.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1862)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1862)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1862)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1862)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_123009.3.
FEATURES Location/Qualifiers
source 1..1862
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1862
/gene="scpl1"
/locus_tag="AT5G36180"
/gene_synonym="MAB16.13; MAB16_13; serine
carboxypeptidase-like 1"
/db_xref="Araport:AT5G36180"
/db_xref="GeneID:833615"
/db_xref="TAIR:AT5G36180"
CDS 264..1589
/gene="scpl1"
/locus_tag="AT5G36180"
/gene_synonym="MAB16.13; MAB16_13; serine
carboxypeptidase-like 1"
/inference="Similar to RNA sequence,
EST:INSD:EG424645.1,INSD:EG424637.1,INSD:BP864304.1,
INSD:EG424649.1,INSD:BP796999.1,INSD:EG424642.1,
INSD:EG424639.1,INSD:EG424351.1,INSD:EG424627.1,
INSD:EG424634.1"
/note="serine carboxypeptidase-like 1 (scpl1); FUNCTIONS
IN: serine-type carboxypeptidase activity; INVOLVED IN:
proteolysis; LOCATED IN: endomembrane system; CONTAINS
InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase
(InterPro:IPR001563); BEST Arabidopsis thaliana protein
match is: serine carboxypeptidase-like 2
(TAIR:AT1G73300.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/codon_start=1
/product="serine carboxypeptidase-like 1"
/protein_id="NP_198467.2"
/db_xref="GeneID:833615"
/db_xref="TAIR:AT5G36180"
/db_xref="Araport:AT5G36180"
/translation="MANKYVSSVLKSLLVLLHLVFLSKQHVDSASIVKSLPGFEGQLP
FELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLILWLTGGPGCSAISGLLFENGPLT
MKLDVYNGTLPSLVSTTYSWTKTSSIIFLDQPVGTGFSYSRTQQFNKPSDSGEAKRIH
EFLQKWLGKHQVFSSNPFYVAGDSYSGLVVPATVQEISKGNYECCNPPINLQGYVLGN
PLTDYTTGSNSRIPFAHGMALISDELYESLKKTCKGEYTNVHPRNTQCLKFVEEFNKC
TNRIFQQLILDPLCETETPDCYIYRYLLTTYWANDATVREALQINKESIGEWVRCYYS
IPYNNDIKSSMPYHVNNSISGYRSLIYSGDHDFEVPYLGTQAWIRSLNYSIIDDWRPW
MVKNQIAGYTRTYANKMTFATIKGGGHTAESKPEEASIMFQRWINGQPL"
ORIGIN
1 aaattattgg attggttagt tggtcttttt ttgtgtggac ttttttgttt tttgctgctt
61 taaaaattga tccagatcat tgaagatact ctggttgcgt tttgaatcaa atacaattat
121 agagcaaaag attaatagta tataattatt tttctatgat cgcaaaatgc gatgacgatt
181 atttagtaat tttgtagtcc gtttctaata gttatataga gttgagcctt aaagacattg
241 ctaatcagaa tctgaaatac gaaatggcaa acaagtacgt ttcctctgtt ctgaagtcgc
301 tgcttgtgct tcttcacctt gtattcttga gtaagcaaca tgttgactct gcctcaatcg
361 tcaagtctct tcctggtttt gaaggtcaac ttccctttga gcttgaaacc gggtatattg
421 gtgttggtga ggaagaggaa gtgcaactat tctactactt catcaagtct gagaggaacc
481 caaaagaaga ccctcttatt ctctggctaa ctggaggacc tggctgctct gccatctctg
541 gccttctttt tgaaaatggg cctctaacta tgaagcttga cgtttacaat ggaactctcc
601 cttctttggt ctctactaca tattcttgga caaagacttc aagcataata ttcttggatc
661 agcctgttgg aactggcttt tcctattcaa gaactcaaca atttaataaa cctagtgatt
721 caggagaagc caaacggatc catgagtttc ttcaaaaatg gctaggaaag catcaagtgt
781 tttcctccaa ccctttctat gttgccggag attcttattc cggtttggtt gttcccgcta
841 ccgttcaaga aatctcaaaa ggaaattatg aatgctgcaa tcctccaata aatcttcagg
901 gctatgtgct cggtaacccg ttaacagact atacaactgg tagtaacagc cgcattccat
961 ttgcccatgg aatggcactg atatctgatg aactctacga gtcgttgaag aaaacctgta
1021 aaggagaata tacaaatgtt catccacgta acacacaatg cttgaaattc gttgaagaat
1081 ttaataagtg cacaaacaga atattccaac aacttatact agatccgttg tgcgaaactg
1141 aaactccaga ttgctatatt tatcggtatt tgctaactac ctactgggcc aatgacgcga
1201 ctgtgcgcga agctcttcaa atcaataagg agagtatagg ggaatgggta cgatgttatt
1261 acagtattcc ttacaataat gacattaaaa gtagcatgcc ttaccatgtg aataacagca
1321 tcagtggtta tcgttctctc atctacagtg gtgatcatga tttcgaagta ccttaccttg
1381 gaactcaagc ttggataaga tctctcaact attcaattat tgatgactgg aggccatgga
1441 tggtcaaaaa tcaaatcgct ggatacacaa ggacttatgc caacaaaatg acatttgcta
1501 ctataaaagg aggtgggcac acagcagaga gtaaaccaga ggaagcctct atcatgtttc
1561 aaaggtggat caatggccaa cctctctaaa agaggggagg acctgccttt acgtataacg
1621 gacaagaaaa tatgattcta gtaacacatc caaatatata tgagaaccct tggccctata
1681 aatgaataga atttaaactc ataatttgta agcaacatgt gtgttgcttt tcaacaagct
1741 tggtgtacag ttgcatttca ccttcttttt ttttcaacaa gcttgttttc tatttgtttg
1801 aagcaaaagt taatttacat gtataaataa gttaatttaa agttatatat attattatca
1861 ct
//