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Arabidopsis thaliana serine carboxypeptidase-like 1 (scpl1), mRNA

NCBI Reference Sequence: NM_123009.4

FASTA Graphics 

LOCUS       NM_123009               1862 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana serine carboxypeptidase-like 1 (scpl1), mRNA.
ACCESSION   NM_123009
VERSION     NM_123009.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1862)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1862)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1862)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_123009.3.
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1862
                     /gene="scpl1"
                     /locus_tag="AT5G36180"
                     /gene_synonym="MAB16.13; MAB16_13; serine
                     carboxypeptidase-like 1"
                     /db_xref="Araport:AT5G36180"
                     /db_xref="GeneID:833615"
                     /db_xref="TAIR:AT5G36180"
     CDS             264..1589
                     /gene="scpl1"
                     /locus_tag="AT5G36180"
                     /gene_synonym="MAB16.13; MAB16_13; serine
                     carboxypeptidase-like 1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG424645.1,INSD:EG424637.1,INSD:BP864304.1,
                     INSD:EG424649.1,INSD:BP796999.1,INSD:EG424642.1,
                     INSD:EG424639.1,INSD:EG424351.1,INSD:EG424627.1,
                     INSD:EG424634.1"
                     /note="serine carboxypeptidase-like 1 (scpl1); FUNCTIONS
                     IN: serine-type carboxypeptidase activity; INVOLVED IN:
                     proteolysis; LOCATED IN: endomembrane system; CONTAINS
                     InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase
                     (InterPro:IPR001563); BEST Arabidopsis thaliana protein
                     match is: serine carboxypeptidase-like 2
                     (TAIR:AT1G73300.1); Has 30201 Blast hits to 17322 proteins
                     in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
                     17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
                     Eukaryotes - 2996 (source: NCBI BLink)."
                     /codon_start=1
                     /product="serine carboxypeptidase-like 1"
                     /protein_id="NP_198467.2"
                     /db_xref="GeneID:833615"
                     /db_xref="TAIR:AT5G36180"
                     /db_xref="Araport:AT5G36180"
                     /translation="MANKYVSSVLKSLLVLLHLVFLSKQHVDSASIVKSLPGFEGQLP
                     FELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLILWLTGGPGCSAISGLLFENGPLT
                     MKLDVYNGTLPSLVSTTYSWTKTSSIIFLDQPVGTGFSYSRTQQFNKPSDSGEAKRIH
                     EFLQKWLGKHQVFSSNPFYVAGDSYSGLVVPATVQEISKGNYECCNPPINLQGYVLGN
                     PLTDYTTGSNSRIPFAHGMALISDELYESLKKTCKGEYTNVHPRNTQCLKFVEEFNKC
                     TNRIFQQLILDPLCETETPDCYIYRYLLTTYWANDATVREALQINKESIGEWVRCYYS
                     IPYNNDIKSSMPYHVNNSISGYRSLIYSGDHDFEVPYLGTQAWIRSLNYSIIDDWRPW
                     MVKNQIAGYTRTYANKMTFATIKGGGHTAESKPEEASIMFQRWINGQPL"
ORIGIN      
        1 aaattattgg attggttagt tggtcttttt ttgtgtggac ttttttgttt tttgctgctt
       61 taaaaattga tccagatcat tgaagatact ctggttgcgt tttgaatcaa atacaattat
      121 agagcaaaag attaatagta tataattatt tttctatgat cgcaaaatgc gatgacgatt
      181 atttagtaat tttgtagtcc gtttctaata gttatataga gttgagcctt aaagacattg
      241 ctaatcagaa tctgaaatac gaaatggcaa acaagtacgt ttcctctgtt ctgaagtcgc
      301 tgcttgtgct tcttcacctt gtattcttga gtaagcaaca tgttgactct gcctcaatcg
      361 tcaagtctct tcctggtttt gaaggtcaac ttccctttga gcttgaaacc gggtatattg
      421 gtgttggtga ggaagaggaa gtgcaactat tctactactt catcaagtct gagaggaacc
      481 caaaagaaga ccctcttatt ctctggctaa ctggaggacc tggctgctct gccatctctg
      541 gccttctttt tgaaaatggg cctctaacta tgaagcttga cgtttacaat ggaactctcc
      601 cttctttggt ctctactaca tattcttgga caaagacttc aagcataata ttcttggatc
      661 agcctgttgg aactggcttt tcctattcaa gaactcaaca atttaataaa cctagtgatt
      721 caggagaagc caaacggatc catgagtttc ttcaaaaatg gctaggaaag catcaagtgt
      781 tttcctccaa ccctttctat gttgccggag attcttattc cggtttggtt gttcccgcta
      841 ccgttcaaga aatctcaaaa ggaaattatg aatgctgcaa tcctccaata aatcttcagg
      901 gctatgtgct cggtaacccg ttaacagact atacaactgg tagtaacagc cgcattccat
      961 ttgcccatgg aatggcactg atatctgatg aactctacga gtcgttgaag aaaacctgta
     1021 aaggagaata tacaaatgtt catccacgta acacacaatg cttgaaattc gttgaagaat
     1081 ttaataagtg cacaaacaga atattccaac aacttatact agatccgttg tgcgaaactg
     1141 aaactccaga ttgctatatt tatcggtatt tgctaactac ctactgggcc aatgacgcga
     1201 ctgtgcgcga agctcttcaa atcaataagg agagtatagg ggaatgggta cgatgttatt
     1261 acagtattcc ttacaataat gacattaaaa gtagcatgcc ttaccatgtg aataacagca
     1321 tcagtggtta tcgttctctc atctacagtg gtgatcatga tttcgaagta ccttaccttg
     1381 gaactcaagc ttggataaga tctctcaact attcaattat tgatgactgg aggccatgga
     1441 tggtcaaaaa tcaaatcgct ggatacacaa ggacttatgc caacaaaatg acatttgcta
     1501 ctataaaagg aggtgggcac acagcagaga gtaaaccaga ggaagcctct atcatgtttc
     1561 aaaggtggat caatggccaa cctctctaaa agaggggagg acctgccttt acgtataacg
     1621 gacaagaaaa tatgattcta gtaacacatc caaatatata tgagaaccct tggccctata
     1681 aatgaataga atttaaactc ataatttgta agcaacatgt gtgttgcttt tcaacaagct
     1741 tggtgtacag ttgcatttca ccttcttttt ttttcaacaa gcttgttttc tatttgtttg
     1801 aagcaaaagt taatttacat gtataaataa gttaatttaa agttatatat attattatca
     1861 ct
//
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Reference sequence information

More about the scpl1 gene

  • scpl1 gene
    Also Known As: AT5G36180, MAB16.13, MA...

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