LOCUS NM_121246 2754 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana mechanosensitive channel of small
conductance-like 10 (MSL10), mRNA.
ACCESSION NM_121246
VERSION NM_121246.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2754)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 2754)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2754)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2754)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_121246.4.
FEATURES Location/Qualifiers
source 1..2754
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..2754
/gene="MSL10"
/locus_tag="AT5G12080"
/gene_synonym="ATMSL10; F14F18.230; F14F18_230;
mechanosensitive channel of small conductance-like 10"
/note="Encodes a mechanosensitive (or stretch-activated)
ion channel in the plasma membrane with a moderate
preference for anions."
/db_xref="Araport:AT5G12080"
/db_xref="GeneID:831081"
/db_xref="TAIR:AT5G12080"
CDS 261..2465
/gene="MSL10"
/locus_tag="AT5G12080"
/gene_synonym="ATMSL10; F14F18.230; F14F18_230;
mechanosensitive channel of small conductance-like 10"
/inference="Similar to RNA sequence,
EST:INSD:BP797904.1,INSD:DR210064.1,INSD:ES211522.1,
INSD:EL128095.1,INSD:BP574598.1,INSD:EL322139.1,
INSD:BP586631.1,INSD:AV792926.1,INSD:ES008560.1,
INSD:ES103745.1,INSD:BP595278.1,INSD:BP797692.1,
INSD:BP667707.1,INSD:ES034596.1,INSD:AV531075.1,
INSD:EL092555.1,INSD:EL998288.1,INSD:AV559010.1,
INSD:BP591809.1,INSD:BP843338.1,INSD:BP576574.1,
INSD:BP789508.1,INSD:BP597464.1,INSD:ES194223.1,
INSD:EL145257.1,INSD:BP564256.1,INSD:BP780159.1,
INSD:AV825922.1,INSD:BP575195.1,INSD:BP593929.1,
INSD:BP584306.1,INSD:EL285030.1,INSD:BP564100.1,
INSD:EL100584.1,INSD:BP583662.1,INSD:EH924093.1,
INSD:EH838806.1,INSD:DR232902.1,INSD:BP798597.1,
INSD:BP585239.1,INSD:ES134941.1,INSD:CB254889.1,
INSD:BP611212.1,INSD:EG490642.1"
/inference="similar to RNA sequence, mRNA:INSD:BT002236.1"
/note="mechanosensitive channel of small conductance-like
10 (MSL10); FUNCTIONS IN: mechanically-gated ion channel
activity; INVOLVED IN: detection of mechanical stimulus;
LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000,
predicted (InterPro:IPR016688), Mechanosensitive ion
channel MscS (InterPro:IPR006685), Like-Sm
ribonucleoprotein (LSM)-related domain
(InterPro:IPR010920); BEST Arabidopsis thaliana protein
match is: mechanosensitive channel of small
conductance-like 9 (TAIR:AT5G19520.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink)."
/codon_start=1
/product="mechanosensitive channel of small
conductance-like 10"
/protein_id="NP_196769.1"
/db_xref="GeneID:831081"
/db_xref="TAIR:AT5G12080"
/db_xref="Araport:AT5G12080"
/translation="MAEQKSSNGGGGGGDVVINVPVEEASRRSKEMASPESEKGVPFS
KSPSPEISKLVGSPNKPPRAPNQNNVGLTQRKSFARSVYSKPKSRFVDPSCPVDTSIL
EEEVREQLGAGFSFSRASPNNKSNRSVGSPAPVTPSKVVVEKDEDEEIYKKVKLNREM
RSKISTLALIESAFFVVILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIFSGMLVT
NWFMRLIVFLIETNFLLRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVKRSPA
ATKVLKCITRTLISILTGAFFWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTL
SGLPLMEEAERVGREPSTGHLSFATVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRV
LMEAVRTSGLSTISDTLDETAYGEGKEQADREITSEMEALAAAYHVFRNVAQPFFNYI
EEEDLLRFMIKEEVDLVFPLFDGAAETGRITRKAFTEWVVKVYTSRRALAHSLNDTKT
AVKQLNKLVTAILMVVTVVIWLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESI
VFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYF
RSPNMGETVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLK
MALYSDHTITFQENRERNLRRTELSLAIKRMLEDLHIDYTLLPQDINLTKKN"
ORIGIN
1 ctttttctct ctttcctctt tccatgttta tgttttctat tatttagttg gcttttggta
61 ttttgttggt ttctgggttt aagccatttt tttcccaccg cctctgcagc tctgcttttt
121 tagctgctat tttttttttt tgcttttggt cttcttcttc ttcttcaaga atgagctaat
181 actcacagaa gaagaagatt tttctttgga tttttcacta ctgaggcatt gttgtgaaat
241 tggatggtag tagcattgga atggcagaac aaaagagtag taacggagga ggaggaggag
301 gagatgttgt tatcaatgtt ccagttgagg aagcatcaag gcgttccaag gaaatggctt
361 caccagagtc tgagaaagga gttcccttta gtaaaagccc ttctcctgaa atctctaagc
421 ttgttggtag tcctaacaag cctcctagag ctccaaatca gaacaatgtg ggtctaactc
481 agaggaaatc ttttgcaagg tcggtttact caaaacccaa gtcccggttt gttgatccat
541 cttgtcctgt agacacaagt attctagagg aggaagttag ggagcaactt ggtgctggtt
601 tttcttttag tagagcttct ccgaataaca aatctaatag gagtgtcggg tcaccagcac
661 cggttactcc aagtaaagtc gttgttgaga aagatgagga tgaggaaatc tacaagaagg
721 ttaagctgaa cagagagatg cgcagtaaga taagtacatt ggctttgata gagtcagctt
781 tctttgtggt gattttgagc gctttggttg cgagtttaac cattaatgtc ctgaaacatc
841 acaccttctg ggggctagaa gtctggaaat ggtgtgtgct tgtgatggtt atattcagtg
901 gaatgttggt gacaaactgg ttcatgcgtt tgattgtgtt cctcatagaa acaaactttc
961 ttttgaggag aaaagtgctc tactttgtgc acggcttgaa gaagagcgtc caagttttca
1021 tttggctctg cttgattctt gttgcttgga tattgttgtt caaccacgac gtgaaacggt
1081 cccccgcagc caccaaagtc ctcaaatgta ttaccaggac tcttatttcc attcttacag
1141 gggcattctt ttggctggtg aaaacactct tgttgaaaat ccttgcagcg aatttcaacg
1201 tcaataactt tttcgatagg attcaagatt ctgttttcca ccagtatgtt ctacaaacgc
1261 tctcgggtct tccacttatg gaagaggcag agagggtcgg gcgtgagcca agcacaggcc
1321 atttgagttt cgcgactgta gtgaaaaaag gaacggttaa agagaagaaa gtgattgata
1381 tggggaaagt tcataagatg aagcgggaga aagtttcggc ttggactatg cgagttttga
1441 tggaagcggt tagaacttca ggtctctcta ctatctctga cacattggac gaaacagcat
1501 acggcgaggg gaaagagcaa gctgacagag aaattactag tgagatggag gctttggctg
1561 ctgcttacca tgtcttcaga aatgttgctc agcccttctt caattacata gaggaagagg
1621 acttgcttag gtttatgatt aaggaagagg ttgatcttgt gttcccattg tttgatggtg
1681 ccgctgagac cgggagaatt acaagaaaag ctttcacaga atgggtggtt aaggtgtaca
1741 cgagccggag agctttagcg cattccttaa acgacacaaa aacagcggtt aagcagttaa
1801 acaaacttgt gacagcaatc ttgatggtgg ttaccgttgt catttggctg ctccttctag
1861 aagtagcaac gactaaggtt ttgctgttct tctccaccca actcgtggct ctggctttta
1921 taatcggaag cacatgcaaa aacctctttg aatccattgt gttcgtattc gtcatgcatc
1981 cttatgatgt cggtgatcga tgtgttgttg acggtgtcgc gatgctggtg gaagaaatga
2041 atctcttaac gacagtgttc ttgaagctta acaacgagaa agtgtattat ccgaacgctg
2101 ttttggccac gaaaccgata agcaattact tcagaagtcc gaatatggga gaaacagtgg
2161 aattctctat ctctttctcg acaccagtct ctaagatagc acatctcaaa gaaagaatcg
2221 ccgagtactt ggagcagaac ccgcaacatt gggcaccggt tcactcggtg gtggtgaagg
2281 agatagagaa catgaacaag ctgaagatgg ccctatacag tgaccacacc atcacgtttc
2341 aggaaaacag agagaggaat cttagaagaa ccgaactttc tttggccatt aagagaatgt
2401 tggaggacct tcacatcgac tacactctcc ttcctcaaga cattaatctc acaaagaaga
2461 actgatgaga accaatttaa aaccggtttg gtgttttttc taaaccgttg ttataagaca
2521 ttattattac caaacgttgt gatactgttt tgtttaaggc ttttagagta gatgatgaaa
2581 tcaattttct aaaccgactc aacttttatg gattttacaa aattaggcat tttatggata
2641 aaaatcttag tctttgaaaa tctgaataaa atgcaagatc tgtcaaaaat gatttgtcat
2701 gtattgattg tacaaaagtt ttgttacaaa ataagaagaa aagtcttatg tgag
//