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Arabidopsis thaliana mechanosensitive channel of small conductance-like 10 (MSL10), mRNA

NCBI Reference Sequence: NM_121246.5

FASTA Graphics 

LOCUS       NM_121246               2754 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana mechanosensitive channel of small
            conductance-like 10 (MSL10), mRNA.
ACCESSION   NM_121246
VERSION     NM_121246.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2754)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 2754)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2754)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2754)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_121246.4.
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..2754
                     /gene="MSL10"
                     /locus_tag="AT5G12080"
                     /gene_synonym="ATMSL10; F14F18.230; F14F18_230;
                     mechanosensitive channel of small conductance-like 10"
                     /note="Encodes a mechanosensitive (or stretch-activated)
                     ion channel in the plasma membrane with a moderate
                     preference for anions."
                     /db_xref="Araport:AT5G12080"
                     /db_xref="GeneID:831081"
                     /db_xref="TAIR:AT5G12080"
     CDS             261..2465
                     /gene="MSL10"
                     /locus_tag="AT5G12080"
                     /gene_synonym="ATMSL10; F14F18.230; F14F18_230;
                     mechanosensitive channel of small conductance-like 10"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP797904.1,INSD:DR210064.1,INSD:ES211522.1,
                     INSD:EL128095.1,INSD:BP574598.1,INSD:EL322139.1,
                     INSD:BP586631.1,INSD:AV792926.1,INSD:ES008560.1,
                     INSD:ES103745.1,INSD:BP595278.1,INSD:BP797692.1,
                     INSD:BP667707.1,INSD:ES034596.1,INSD:AV531075.1,
                     INSD:EL092555.1,INSD:EL998288.1,INSD:AV559010.1,
                     INSD:BP591809.1,INSD:BP843338.1,INSD:BP576574.1,
                     INSD:BP789508.1,INSD:BP597464.1,INSD:ES194223.1,
                     INSD:EL145257.1,INSD:BP564256.1,INSD:BP780159.1,
                     INSD:AV825922.1,INSD:BP575195.1,INSD:BP593929.1,
                     INSD:BP584306.1,INSD:EL285030.1,INSD:BP564100.1,
                     INSD:EL100584.1,INSD:BP583662.1,INSD:EH924093.1,
                     INSD:EH838806.1,INSD:DR232902.1,INSD:BP798597.1,
                     INSD:BP585239.1,INSD:ES134941.1,INSD:CB254889.1,
                     INSD:BP611212.1,INSD:EG490642.1"
                     /inference="similar to RNA sequence, mRNA:INSD:BT002236.1"
                     /note="mechanosensitive channel of small conductance-like
                     10 (MSL10); FUNCTIONS IN: mechanically-gated ion channel
                     activity; INVOLVED IN: detection of mechanical stimulus;
                     LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26
                     plant structures; EXPRESSED DURING: 13 growth stages;
                     CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000,
                     predicted (InterPro:IPR016688), Mechanosensitive ion
                     channel MscS (InterPro:IPR006685), Like-Sm
                     ribonucleoprotein (LSM)-related domain
                     (InterPro:IPR010920); BEST Arabidopsis thaliana protein
                     match is: mechanosensitive channel of small
                     conductance-like 9 (TAIR:AT5G19520.1); Has 1807 Blast hits
                     to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
                     Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
                     Other Eukaryotes - 339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="mechanosensitive channel of small
                     conductance-like 10"
                     /protein_id="NP_196769.1"
                     /db_xref="GeneID:831081"
                     /db_xref="TAIR:AT5G12080"
                     /db_xref="Araport:AT5G12080"
                     /translation="MAEQKSSNGGGGGGDVVINVPVEEASRRSKEMASPESEKGVPFS
                     KSPSPEISKLVGSPNKPPRAPNQNNVGLTQRKSFARSVYSKPKSRFVDPSCPVDTSIL
                     EEEVREQLGAGFSFSRASPNNKSNRSVGSPAPVTPSKVVVEKDEDEEIYKKVKLNREM
                     RSKISTLALIESAFFVVILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIFSGMLVT
                     NWFMRLIVFLIETNFLLRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVKRSPA
                     ATKVLKCITRTLISILTGAFFWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTL
                     SGLPLMEEAERVGREPSTGHLSFATVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRV
                     LMEAVRTSGLSTISDTLDETAYGEGKEQADREITSEMEALAAAYHVFRNVAQPFFNYI
                     EEEDLLRFMIKEEVDLVFPLFDGAAETGRITRKAFTEWVVKVYTSRRALAHSLNDTKT
                     AVKQLNKLVTAILMVVTVVIWLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESI
                     VFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYF
                     RSPNMGETVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLK
                     MALYSDHTITFQENRERNLRRTELSLAIKRMLEDLHIDYTLLPQDINLTKKN"
ORIGIN      
        1 ctttttctct ctttcctctt tccatgttta tgttttctat tatttagttg gcttttggta
       61 ttttgttggt ttctgggttt aagccatttt tttcccaccg cctctgcagc tctgcttttt
      121 tagctgctat tttttttttt tgcttttggt cttcttcttc ttcttcaaga atgagctaat
      181 actcacagaa gaagaagatt tttctttgga tttttcacta ctgaggcatt gttgtgaaat
      241 tggatggtag tagcattgga atggcagaac aaaagagtag taacggagga ggaggaggag
      301 gagatgttgt tatcaatgtt ccagttgagg aagcatcaag gcgttccaag gaaatggctt
      361 caccagagtc tgagaaagga gttcccttta gtaaaagccc ttctcctgaa atctctaagc
      421 ttgttggtag tcctaacaag cctcctagag ctccaaatca gaacaatgtg ggtctaactc
      481 agaggaaatc ttttgcaagg tcggtttact caaaacccaa gtcccggttt gttgatccat
      541 cttgtcctgt agacacaagt attctagagg aggaagttag ggagcaactt ggtgctggtt
      601 tttcttttag tagagcttct ccgaataaca aatctaatag gagtgtcggg tcaccagcac
      661 cggttactcc aagtaaagtc gttgttgaga aagatgagga tgaggaaatc tacaagaagg
      721 ttaagctgaa cagagagatg cgcagtaaga taagtacatt ggctttgata gagtcagctt
      781 tctttgtggt gattttgagc gctttggttg cgagtttaac cattaatgtc ctgaaacatc
      841 acaccttctg ggggctagaa gtctggaaat ggtgtgtgct tgtgatggtt atattcagtg
      901 gaatgttggt gacaaactgg ttcatgcgtt tgattgtgtt cctcatagaa acaaactttc
      961 ttttgaggag aaaagtgctc tactttgtgc acggcttgaa gaagagcgtc caagttttca
     1021 tttggctctg cttgattctt gttgcttgga tattgttgtt caaccacgac gtgaaacggt
     1081 cccccgcagc caccaaagtc ctcaaatgta ttaccaggac tcttatttcc attcttacag
     1141 gggcattctt ttggctggtg aaaacactct tgttgaaaat ccttgcagcg aatttcaacg
     1201 tcaataactt tttcgatagg attcaagatt ctgttttcca ccagtatgtt ctacaaacgc
     1261 tctcgggtct tccacttatg gaagaggcag agagggtcgg gcgtgagcca agcacaggcc
     1321 atttgagttt cgcgactgta gtgaaaaaag gaacggttaa agagaagaaa gtgattgata
     1381 tggggaaagt tcataagatg aagcgggaga aagtttcggc ttggactatg cgagttttga
     1441 tggaagcggt tagaacttca ggtctctcta ctatctctga cacattggac gaaacagcat
     1501 acggcgaggg gaaagagcaa gctgacagag aaattactag tgagatggag gctttggctg
     1561 ctgcttacca tgtcttcaga aatgttgctc agcccttctt caattacata gaggaagagg
     1621 acttgcttag gtttatgatt aaggaagagg ttgatcttgt gttcccattg tttgatggtg
     1681 ccgctgagac cgggagaatt acaagaaaag ctttcacaga atgggtggtt aaggtgtaca
     1741 cgagccggag agctttagcg cattccttaa acgacacaaa aacagcggtt aagcagttaa
     1801 acaaacttgt gacagcaatc ttgatggtgg ttaccgttgt catttggctg ctccttctag
     1861 aagtagcaac gactaaggtt ttgctgttct tctccaccca actcgtggct ctggctttta
     1921 taatcggaag cacatgcaaa aacctctttg aatccattgt gttcgtattc gtcatgcatc
     1981 cttatgatgt cggtgatcga tgtgttgttg acggtgtcgc gatgctggtg gaagaaatga
     2041 atctcttaac gacagtgttc ttgaagctta acaacgagaa agtgtattat ccgaacgctg
     2101 ttttggccac gaaaccgata agcaattact tcagaagtcc gaatatggga gaaacagtgg
     2161 aattctctat ctctttctcg acaccagtct ctaagatagc acatctcaaa gaaagaatcg
     2221 ccgagtactt ggagcagaac ccgcaacatt gggcaccggt tcactcggtg gtggtgaagg
     2281 agatagagaa catgaacaag ctgaagatgg ccctatacag tgaccacacc atcacgtttc
     2341 aggaaaacag agagaggaat cttagaagaa ccgaactttc tttggccatt aagagaatgt
     2401 tggaggacct tcacatcgac tacactctcc ttcctcaaga cattaatctc acaaagaaga
     2461 actgatgaga accaatttaa aaccggtttg gtgttttttc taaaccgttg ttataagaca
     2521 ttattattac caaacgttgt gatactgttt tgtttaaggc ttttagagta gatgatgaaa
     2581 tcaattttct aaaccgactc aacttttatg gattttacaa aattaggcat tttatggata
     2641 aaaatcttag tctttgaaaa tctgaataaa atgcaagatc tgtcaaaaat gatttgtcat
     2701 gtattgattg tacaaaagtt ttgttacaaa ataagaagaa aagtcttatg tgag
//
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