LOCUS NM_120791 1180 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Ribosomal protein S4 (RPS4A) family protein
(AT5G07090), mRNA.
ACCESSION NM_120791
VERSION NM_120791.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1180)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1180)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1180)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1180)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_120791.3.
FEATURES Location/Qualifiers
source 1..1180
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1180
/locus_tag="AT5G07090"
/gene_synonym="T28J14.30"
/db_xref="Araport:AT5G07090"
/db_xref="GeneID:830600"
/db_xref="TAIR:AT5G07090"
CDS 47..835
/locus_tag="AT5G07090"
/gene_synonym="T28J14.30"
/inference="Similar to RNA sequence,
EST:INSD:BP641461.1,INSD:BP866722.1,INSD:EL229875.1,
INSD:EH821405.1,INSD:DR312940.1,INSD:DR312942.1,
INSD:AV821085.1,INSD:ES154880.1,INSD:EL992487.1,
INSD:DR312923.1,INSD:DR312941.1,INSD:ES066032.1,
INSD:ES168896.1,INSD:BP640951.1,INSD:T04040.1,
INSD:AV545181.1,INSD:BP813232.1,INSD:EL310177.1,
INSD:ES190088.1,INSD:BP661603.1,INSD:BP647140.1,
INSD:ES090041.1,INSD:EH943196.1,INSD:EL190100.1,
INSD:BP780653.1,INSD:BP567109.1,INSD:ES135843.1,
INSD:ES177069.1,INSD:AV808566.1,INSD:BP856319.1,
INSD:BP868765.1,INSD:ES146761.1,INSD:EH879002.1,
INSD:ES205851.1,INSD:EH924947.1,INSD:DR312927.1,
INSD:ES120009.1,INSD:EL094163.1,INSD:BP813207.1,
INSD:EL289997.1,INSD:EH940008.1,INSD:ES209252.1,
INSD:BP577632.1,INSD:DR312907.1,INSD:BE039435.1,
INSD:AV784121.1,INSD:DR312912.1,INSD:EH844744.1,
INSD:EL975720.1,INSD:ES070833.1,INSD:ES156015.1,
INSD:ES088369.1,INSD:BP566500.1,INSD:ES099633.1,
INSD:DR312904.1,INSD:BP582406.1,INSD:EL337898.1,
INSD:BP660758.1,INSD:EH869964.1,INSD:BP624559.1,
INSD:BP661071.1,INSD:BP866052.1,INSD:EL000223.1,
INSD:ES117093.1,INSD:BP628419.1,INSD:BU635634.1,
INSD:BP647487.1,INSD:ES205540.1,INSD:DR312916.1,
INSD:BP617399.1,INSD:BP590823.1,INSD:BP648638.1,
INSD:EH972243.1,INSD:EH965890.1,INSD:EL187426.1,
INSD:EL189983.1,INSD:EL153104.1,INSD:EL108754.1,
INSD:EL134234.1,INSD:BP575712.1,INSD:BP652531.1,
INSD:BP847107.1,INSD:EL176416.1,INSD:EH869373.1,
INSD:ES128731.1,INSD:BP629186.1,INSD:BP644870.1,
INSD:EH959631.1,INSD:DR312900.1,INSD:AV812992.1,
INSD:ES202274.1,INSD:EH882298.1,INSD:BP847253.1,
INSD:DR312918.1,INSD:ES130751.1,INSD:BP569731.1,
INSD:BP803784.1,INSD:DR312937.1,INSD:EL172564.1,
INSD:EH809735.1,INSD:DR312926.1,INSD:BP622214.1,
INSD:BP657200.1,INSD:ES115114.1,INSD:ES162745.1,
INSD:BP654569.1,INSD:EL257694.1,INSD:BP816616.1,
INSD:ES108919.1,INSD:EL271261.1,INSD:EL011465.1,
INSD:AV558811.1,INSD:ES096483.1,INSD:ES019451.1,
INSD:ES185473.1,INSD:BP794608.1,INSD:EL214318.1,
INSD:ES018311.1,INSD:EL234596.1,INSD:BP641589.1,
INSD:EL102261.1,INSD:EL162749.1,INSD:AV804839.1,
INSD:BP643343.1,INSD:BP858969.1,INSD:EL262135.1,
INSD:ES046487.1,INSD:EL133207.1,INSD:ES204044.1,
INSD:AA042751.1,INSD:ES117045.1,INSD:AV550279.1,
INSD:BP655386.1,INSD:BP777749.1,INSD:BP792768.1,
INSD:ES081794.1,INSD:DR312908.1,INSD:EL122898.1,
INSD:BP565590.1,INSD:BP831014.1,INSD:EH922427.1,
INSD:EH813855.1,INSD:BP583929.1,INSD:BP567002.1,
INSD:DR312909.1,INSD:ES128665.1,INSD:EH978018.1,
INSD:EL226348.1,INSD:ES159736.1,INSD:AV545755.1,
INSD:BP643148.1,INSD:BP850732.1,INSD:BP565499.1,
INSD:BP633732.1,INSD:Z17446.1,INSD:BP580267.1,
INSD:BP645817.1,INSD:BP816241.1,INSD:EL116951.1,
INSD:CF773134.1,INSD:BP812716.1,INSD:EL307078.1,
INSD:EL000182.1,INSD:AV560361.1,INSD:EL237857.1,
INSD:BP580996.1,INSD:BP577660.1,INSD:EL089980.1,
INSD:ES203203.1,INSD:ES197154.1,INSD:EH816019.1,
INSD:DR312932.1,INSD:EL216793.1,INSD:ES212899.1,
INSD:EL283474.1,INSD:EH802886.1,INSD:EL045056.1,
INSD:CB258910.1,INSD:BP813856.1,INSD:EH991474.1,
INSD:BU636247.1,INSD:BP587218.1,INSD:BP799511.1,
INSD:BP567037.1,INSD:BP630352.1,INSD:EL200021.1,
INSD:EL285090.1,INSD:BP804290.1,INSD:BP659723.1,
INSD:BP839379.1,INSD:EL060079.1,INSD:AV807912.1,
INSD:EL292078.1,INSD:BP660689.1,INSD:BP819434.1,
INSD:BP571388.1,INSD:BP836398.1,INSD:BP567089.1,
INSD:EH966430.1,INSD:DR372172.1,INSD:BP658720.1,
INSD:EH892220.1,INSD:EL028707.1,INSD:ES060760.1,
INSD:ES084211.1,INSD:EL170294.1,INSD:ES198599.1,
INSD:EL328911.1,INSD:BP575610.1,INSD:EL295073.1,
INSD:BP652691.1,INSD:DR312930.1,INSD:DR312931.1,
INSD:EL993207.1,INSD:AV555130.1,INSD:BP590304.1,
INSD:BP822148.1,INSD:BP659605.1,INSD:EH900803.1,
INSD:ES061585.1,INSD:AV824118.1,INSD:BP656580.1,
INSD:EL285395.1,INSD:BP587100.1,INSD:ES069677.1,
INSD:EL244614.1,INSD:Z18498.1,INSD:BP802004.1,
INSD:BP642423.1,INSD:EL103518.1,INSD:BP577532.1,
INSD:DR312917.1,INSD:DR312924.1,INSD:ES114966.1,
INSD:ES086052.1,INSD:BP580826.1,INSD:BP596543.1,
INSD:BP862279.1,INSD:ES122858.1,INSD:BP573041.1,
INSD:EL182360.1,INSD:ES189122.1,INSD:BP630936.1,
INSD:AV553787.1,INSD:DR312934.1,INSD:EL159928.1,
INSD:DR312925.1,INSD:BP580861.1,INSD:DR312935.1,
INSD:DR312919.1,INSD:BP828617.1,INSD:ES148018.1,
INSD:ES007261.1,INSD:CB185711.2,INSD:BP639658.1,
INSD:DR312939.1,INSD:ES023547.1,INSD:BP654004.1,
INSD:DR312913.1,INSD:ES070882.1,INSD:ES117133.1,
INSD:BP668249.1,INSD:EL297497.1,INSD:EH945996.1,
INSD:BP638082.1,INSD:ES021993.1,INSD:EH897992.1,
INSD:CB252662.1,INSD:AV532520.1,INSD:EL158748.1,
INSD:ES213685.1,INSD:BP813981.1,INSD:BP655008.1,
INSD:EH954371.1,INSD:BP628753.1,INSD:BP592530.1,
INSD:BE530499.1,INSD:BP828659.1,INSD:EL270204.1,
INSD:EH896854.1,INSD:AV826458.1,INSD:ES057495.1,
INSD:EL310699.1,INSD:DR312905.1,INSD:EL977764.1,
INSD:ES147794.1,INSD:ES041448.1,INSD:ES069772.1,
INSD:EL127839.1,INSD:Z26243.1,INSD:EL115600.1,
INSD:EL214213.1,INSD:EH841682.1,INSD:EL200076.1,
INSD:BP629713.1,INSD:DR312914.1,INSD:DR312922.1,
INSD:DR312903.1,INSD:BP577557.1,INSD:EL003147.1,
INSD:EL086037.1,INSD:EL976188.1,INSD:ES097957.1,
INSD:BP566493.1,INSD:AV785268.1,INSD:BP560970.2,
INSD:EH893817.1,INSD:ES127921.1,INSD:EH815813.1,
INSD:AV795025.1,INSD:EH974358.1,INSD:ES205293.1,
INSD:ES210198.1,INSD:EL321971.1,INSD:EL186399.1,
INSD:ES158929.1,INSD:ES202648.1,INSD:CF651615.1,
INSD:BP644162.1,INSD:EL970140.1,INSD:EG520307.1,
INSD:EL083640.1,INSD:T04620.1,INSD:AV788641.1,
INSD:BP839774.1,INSD:BP797744.1,INSD:BP591890.1,
INSD:BP572262.1,INSD:BE039532.1,INSD:BP822225.1,
INSD:AV797634.1,INSD:BP581731.1,INSD:ES000320.1,
INSD:BP834119.1,INSD:ES065586.1,INSD:EL972723.1,
INSD:AV563550.1,INSD:EL327180.1,INSD:BP644044.1,
INSD:DR312920.1,INSD:BP638544.1,INSD:EH981191.1,
INSD:ES094679.1,INSD:EH934461.1,INSD:ES206922.1,
INSD:ES049376.1,INSD:BP596653.1,INSD:ES079781.1,
INSD:BP664843.1,INSD:EL243491.1,INSD:EL167224.1,
INSD:EL998405.1,INSD:BP827355.1,INSD:BP654844.1,
INSD:EL303819.1,INSD:CB253213.1,INSD:BP827394.1,
INSD:EL011339.1,INSD:EL090188.1,INSD:ES173538.1,
INSD:BP564353.1,INSD:BP652247.1,INSD:EL026344.1,
INSD:BP664653.1,INSD:EL275252.1,INSD:ES137505.1,
INSD:EL973272.1,INSD:AV817331.1,INSD:EL012911.1,
INSD:ES105434.1,INSD:ES203165.1,INSD:BP823880.1,
INSD:ES067569.1,INSD:ES000423.1,INSD:EL138759.1,
INSD:EL273168.1,INSD:AV817955.1,INSD:EL066182.1,
INSD:BP594022.1,INSD:EL258045.1,INSD:BP627693.1,
INSD:CB263540.1,INSD:BP656538.1,INSD:BP821363.1,
INSD:AV542298.1,INSD:EH831760.1,INSD:EL312649.1,
INSD:DR312921.1,INSD:BP597182.1,INSD:ES175348.1,
INSD:EH916335.1,INSD:N38330.1,INSD:BP639488.1,
INSD:EL114966.1,INSD:AV534114.1,INSD:BP866063.1,
INSD:EL158200.1,INSD:AV538128.1,INSD:DR312902.1,
INSD:EL212465.1,INSD:BP654902.1,INSD:EL975352.1,
INSD:BP579458.1,INSD:BP641774.1,INSD:AV521788.1,
INSD:BP823092.1,INSD:BE523434.1,INSD:EL084773.1,
INSD:CA781269.1,INSD:BP623965.1,INSD:ES115840.1,
INSD:EH936454.1,INSD:DR312897.1,INSD:EL242349.1,
INSD:ES182453.1,INSD:EL142939.1,INSD:BU635373.1,
INSD:EH987083.1,INSD:BP833320.1,INSD:ES201974.1,
INSD:EL088999.1,INSD:DR312910.1,INSD:BP832616.1,
INSD:BP834410.1,INSD:CB253164.1,INSD:BP799976.1,
INSD:ES155095.1,INSD:EH919249.1,INSD:DR312898.1,
INSD:DR312906.1,INSD:DR372089.1,INSD:EH933369.1,
INSD:BP622198.1,INSD:EL022997.1,INSD:AV816641.1,
INSD:BP667911.1,INSD:EL220448.1,INSD:ES157364.1,
INSD:EL114621.1,INSD:BP627265.1,INSD:BP640038.1,
INSD:BP640741.1,INSD:EL282063.1,INSD:EH970632.1,
INSD:BP660129.1,INSD:EL338158.1,INSD:ES048377.1,
INSD:EH899613.1,INSD:EH878846.1,INSD:EL215864.1,
INSD:EH805776.1,INSD:EH958081.1,INSD:T75953.1,
INSD:DR312899.1,INSD:BP799337.1,INSD:EH981285.1,
INSD:ES086184.1,INSD:ES149569.1,INSD:EL180341.1,
INSD:BP584453.1,INSD:Z34163.1,INSD:BP830073.1,
INSD:ES151121.1,INSD:EH893082.1,INSD:EH921867.1,
INSD:DR312915.1,INSD:ES212288.1,INSD:AV818426.1,
INSD:DR312933.1,INSD:DR312929.1,INSD:DR312901.1,
INSD:DR312938.1,INSD:BP645820.1,INSD:ES042555.1,
INSD:BP655004.1,INSD:BP570208.1,INSD:BP581985.1,
INSD:BP867599.1,INSD:ES212861.1,INSD:BP630832.1,
INSD:ES206150.1,INSD:DR312911.1,INSD:BP825199.1,
INSD:BP576188.1,INSD:EL094823.1,INSD:EL974157.1,
INSD:ES061478.1,INSD:BP631420.1,INSD:DR312928.1,
INSD:ES051312.1,INSD:BP651432.1,INSD:BP631124.1,
INSD:BP598438.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX832256.1,INSD:BX832664.1,INSD:AY070769.1,
INSD:AY085205.1,INSD:AY050933.1"
/note="Ribosomal protein S4 (RPS4A) family protein;
FUNCTIONS IN: structural constituent of ribosome, protein
binding; INVOLVED IN: translation; LOCATED IN: cytosolic
small ribosomal subunit, cytosolic ribosome, plasma
membrane; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Ribosomal protein S4e, central (InterPro:IPR013845),
Ribosomal protein S4e, N-terminal, conserved site
(InterPro:IPR018199), RNA-binding S4 (InterPro:IPR002942),
KOW (InterPro:IPR005824), Ribosomal protein S4e,
N-terminal (InterPro:IPR013843), Ribosomal protein S4e
(InterPro:IPR000876); BEST Arabidopsis thaliana protein
match is: Ribosomal protein S4 (RPS4A) family protein
(TAIR:AT5G58420.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/codon_start=1
/product="Ribosomal protein S4 (RPS4A) family protein"
/protein_id="NP_568179.1"
/db_xref="GeneID:830600"
/db_xref="TAIR:AT5G07090"
/db_xref="Araport:AT5G07090"
/translation="MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL
VLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLL
YDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTI
KLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEF
ATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQQAA"
ORIGIN
1 gggcgccgtt aatcgcagcc tcagtggaaa cagagcagct gcaaacatgg caagaggatt
61 gaagaagcat ctaaagaggc tcaatgctcc taagcattgg atgcttgaca aacttggtgg
121 tgccttcgct cccaaaccat cttctggacc tcacaagtcg agggagtgtc ttcctcttgt
181 cctgatcatc aggaacaggt tgaagtatgc tttgacttac cgtgaagtta tctctatctt
241 gatgcaaagg catatccaag ttgatggcaa agtcaggact gacaagactt accctgctgg
301 tttcatggat gttgtatcca tccccaagac caatgagaac ttccgtcttc tctacgacac
361 caagggacgt ttccgtctcc actccatcaa ggatgaggaa gcaaagttca agctttgcaa
421 ggttagatct atccagtttg gtcagaaggg aattccatac ctgaacactt atgatggtcg
481 caccatccgt taccctgacc cgctcatcaa gccaaatgac accatcaagc tggaccttga
541 ggagaacaag attgttgagt tcatcaagtt tgacgtgggt aacgttgtga tggtgactgg
601 aggcagaaac agagggcgtg tgggtgtgat taagaaccgt gaaaagcata agggaagctt
661 tgagacaatc cacattcaag actcaacagg gcatgagttt gccacaaggt tggggaatgt
721 gtacacaatc ggcaaaggaa caaagccatg ggtgtctctt ccaaagggca aaggtattaa
781 gctgaccatc attgaggaag ccaggaagag acttgcttcc cagcaagctg cttgaaagtc
841 caactgcttt gaatcatcaa gacccgtttc ttttacagac tcgctgcttg tctcagtttg
901 tgagtctatt tcttttctta tgttgttgga tttcaaaacc catcaaaaaa tagctgagta
961 gtgctttttg taatgtttgt atggtggatt ttttggtgat ttaccgttta aatcagatga
1021 cagttggtcc actcctttgc ttagtcttct cctttgcttt gcgctattag ttgttgagag
1081 atgagtaata gatattattt tcttggcatt aagtaatcta gaagaagacc tcaaggactc
1141 ctgaaagtga tgtgaattca gccgccttac acaaaaaagt
//